c_cpp/readscorr/cfgparser.h

   1 #ifndef _G_CFGPARSER_H
   2 #define _G_CFGPARSER_H
   3 #include <stdio.h>
   4 #include <stdint.h>
   5
   6 void write_example_cfg(const char * const filename);
   7
   8 #define SDLConfig_Count 5u
   9 typedef struct __SDLConfig {
  10     double GenomeSize,HetRatio,SeqErrRate,SeqDepth,MutEffect;
  11     char * seqfilename;
  12     size_t seqfilename_length;
  13     FILE *fp;
  14     double MaxKmerCount;
  15     uint64_t ArraySize;
  16     unsigned char rBit;
  17 } SDLConfig;
  18
  19 SDLConfig *read_SDL_cfg(const double dkmersize, const char * const filename);
  20 void calculate_SDL_cfg(const double dkmersize, SDLConfig *psdlcfg);
  21 ssize_t get_next_seqfile(SDLConfig * const psdlcfg);
  22 void destory_seqfile(SDLConfig * psdlcfg);
  23
  24 #endif /* cfgparser.h */