modified: makefile
[GalaxyCodeBases.git] / c_cpp / etc / jellyfish / tests / parallel_fastq_sequence_hashing.sh
blobed37a4c919d37473bdb4ef4d3b1cc21a848f87c8
1 #! /bin/sh
3 cd tests
4 . ./compat.sh
6 sort > ${pref}.md5sum <<EOF
7 8a0fe8ee1293f341fbde69e670beb74c ${pref}.histo
8 EOF
9 echo "Counting 22-mers, fastq format, no quality, on ${nCPUs} CPU" && \
10 $JF count --matrix seq10m_matrix_22 -m 22 -t $nCPUs \
11 -o ${pref} -s 10000000 --timing ${pref}.timing seq10m.fq && \
12 $JF histo -f ${pref}_0 > ${pref}.histo && \
13 check ${pref}.md5sum
14 RET=$?
16 cat ${pref}.timing
17 # [ -z "$NODEL" ] && \
18 # rm ${pref}.md5sum ${pref}.histo ${pref}_* ${pref}.timing
20 exit $RET