c_cpp/etc/jellyfish/tests/serial_hashing.sh

   1 #! /bin/sh
   2
   3 cd tests
   4 . ./compat.sh
   5
   6 sort > ${pref}.md5sum <<EOF
   7 4fd24c05f7c18c47e7b69f77aa071f1f ${pref}_0
   8 7059a4e90b6670b2d814e44e2bc7d429 ${pref}.histo
   9 EOF
  10 echo "Counting 22-mers on 1 CPU" && \
  11     $JF count --matrix seq10m_matrix_22 -m 22 -t 1 -o ${pref} \
  12     --timing ${pref}.timing -s 10000000 seq10m.fa && \
  13     $JF histo -f ${pref}_0 > ${pref}.histo && \
  14     check ${pref}.md5sum
  15 RET=$?
  16
  17 cat ${pref}.timing
  18 # [ -z "$NODEL" ] && rm -f ${pref}_* ${pref}.timing ${pref}.md5sum* ${pref}.histo
  19
  20 exit $RET