new file: pixi.toml

[GalaxyCodeBases.git] / projects / recombineMap / sperm_by_fw / snp_calling / cal_sperm_snp.sh

../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S01/chr1.bam.pileup.gz > S01/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S01/chr10.bam.pileup.gz > S01/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S01/chr11.bam.pileup.gz > S01/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S01/chr12.bam.pileup.gz > S01/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S01/chr13.bam.pileup.gz > S01/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S01/chr14.bam.pileup.gz > S01/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S01/chr15.bam.pileup.gz > S01/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S01/chr16.bam.pileup.gz > S01/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S01/chr17.bam.pileup.gz > S01/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S01/chr18.bam.pileup.gz > S01/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S01/chr19.bam.pileup.gz > S01/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S01/chr2.bam.pileup.gz > S01/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S01/chr20.bam.pileup.gz > S01/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S01/chr21.bam.pileup.gz > S01/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S01/chr22.bam.pileup.gz > S01/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S01/chr3.bam.pileup.gz > S01/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S01/chr4.bam.pileup.gz > S01/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S01/chr5.bam.pileup.gz > S01/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S01/chr6.bam.pileup.gz > S01/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S01/chr7.bam.pileup.gz > S01/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S01/chr8.bam.pileup.gz > S01/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S01/chr9.bam.pileup.gz > S01/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S01/chrX.bam.pileup.gz > S01/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S01/chrY.bam.pileup.gz > S01/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S02/chr1.bam.pileup.gz > S02/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S02/chr10.bam.pileup.gz > S02/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S02/chr11.bam.pileup.gz > S02/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S02/chr12.bam.pileup.gz > S02/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S02/chr13.bam.pileup.gz > S02/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S02/chr14.bam.pileup.gz > S02/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S02/chr15.bam.pileup.gz > S02/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S02/chr16.bam.pileup.gz > S02/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S02/chr17.bam.pileup.gz > S02/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S02/chr18.bam.pileup.gz > S02/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S02/chr19.bam.pileup.gz > S02/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S02/chr2.bam.pileup.gz > S02/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S02/chr20.bam.pileup.gz > S02/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S02/chr21.bam.pileup.gz > S02/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S02/chr22.bam.pileup.gz > S02/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S02/chr3.bam.pileup.gz > S02/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S02/chr4.bam.pileup.gz > S02/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S02/chr5.bam.pileup.gz > S02/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S02/chr6.bam.pileup.gz > S02/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S02/chr7.bam.pileup.gz > S02/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S02/chr8.bam.pileup.gz > S02/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S02/chr9.bam.pileup.gz > S02/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S02/chrX.bam.pileup.gz > S02/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S02/chrY.bam.pileup.gz > S02/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S03/chr1.bam.pileup.gz > S03/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S03/chr10.bam.pileup.gz > S03/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S03/chr11.bam.pileup.gz > S03/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S03/chr12.bam.pileup.gz > S03/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S03/chr13.bam.pileup.gz > S03/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S03/chr14.bam.pileup.gz > S03/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S03/chr15.bam.pileup.gz > S03/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S03/chr16.bam.pileup.gz > S03/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S03/chr17.bam.pileup.gz > S03/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S03/chr18.bam.pileup.gz > S03/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S03/chr19.bam.pileup.gz > S03/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S03/chr2.bam.pileup.gz > S03/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S03/chr20.bam.pileup.gz > S03/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S03/chr21.bam.pileup.gz > S03/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S03/chr22.bam.pileup.gz > S03/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S03/chr3.bam.pileup.gz > S03/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S03/chr4.bam.pileup.gz > S03/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S03/chr5.bam.pileup.gz > S03/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S03/chr6.bam.pileup.gz > S03/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S03/chr7.bam.pileup.gz > S03/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S03/chr8.bam.pileup.gz > S03/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S03/chr9.bam.pileup.gz > S03/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S03/chrX.bam.pileup.gz > S03/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S03/chrY.bam.pileup.gz > S03/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S04/chr1.bam.pileup.gz > S04/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S04/chr10.bam.pileup.gz > S04/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S04/chr11.bam.pileup.gz > S04/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S04/chr12.bam.pileup.gz > S04/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S04/chr13.bam.pileup.gz > S04/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S04/chr14.bam.pileup.gz > S04/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S04/chr15.bam.pileup.gz > S04/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S04/chr16.bam.pileup.gz > S04/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S04/chr17.bam.pileup.gz > S04/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S04/chr18.bam.pileup.gz > S04/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S04/chr19.bam.pileup.gz > S04/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S04/chr2.bam.pileup.gz > S04/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S04/chr20.bam.pileup.gz > S04/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S04/chr21.bam.pileup.gz > S04/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S04/chr22.bam.pileup.gz > S04/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S04/chr3.bam.pileup.gz > S04/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S04/chr4.bam.pileup.gz > S04/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S04/chr5.bam.pileup.gz > S04/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S04/chr6.bam.pileup.gz > S04/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S04/chr7.bam.pileup.gz > S04/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S04/chr8.bam.pileup.gz > S04/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S04/chr9.bam.pileup.gz > S04/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S04/chrX.bam.pileup.gz > S04/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S04/chrY.bam.pileup.gz > S04/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S05/chr1.bam.pileup.gz > S05/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S05/chr10.bam.pileup.gz > S05/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S05/chr11.bam.pileup.gz > S05/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S05/chr12.bam.pileup.gz > S05/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S05/chr13.bam.pileup.gz > S05/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S05/chr14.bam.pileup.gz > S05/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S05/chr15.bam.pileup.gz > S05/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S05/chr16.bam.pileup.gz > S05/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S05/chr17.bam.pileup.gz > S05/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S05/chr18.bam.pileup.gz > S05/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S05/chr19.bam.pileup.gz > S05/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S05/chr2.bam.pileup.gz > S05/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S05/chr20.bam.pileup.gz > S05/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S05/chr21.bam.pileup.gz > S05/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S05/chr22.bam.pileup.gz > S05/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S05/chr3.bam.pileup.gz > S05/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S05/chr4.bam.pileup.gz > S05/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S05/chr5.bam.pileup.gz > S05/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S05/chr6.bam.pileup.gz > S05/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S05/chr7.bam.pileup.gz > S05/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S05/chr8.bam.pileup.gz > S05/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S05/chr9.bam.pileup.gz > S05/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S05/chrX.bam.pileup.gz > S05/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S05/chrY.bam.pileup.gz > S05/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S06/chr1.bam.pileup.gz > S06/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S06/chr10.bam.pileup.gz > S06/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S06/chr11.bam.pileup.gz > S06/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S06/chr12.bam.pileup.gz > S06/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S06/chr13.bam.pileup.gz > S06/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S06/chr14.bam.pileup.gz > S06/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S06/chr15.bam.pileup.gz > S06/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S06/chr16.bam.pileup.gz > S06/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S06/chr17.bam.pileup.gz > S06/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S06/chr18.bam.pileup.gz > S06/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S06/chr19.bam.pileup.gz > S06/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S06/chr2.bam.pileup.gz > S06/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S06/chr20.bam.pileup.gz > S06/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S06/chr21.bam.pileup.gz > S06/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S06/chr22.bam.pileup.gz > S06/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S06/chr3.bam.pileup.gz > S06/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S06/chr4.bam.pileup.gz > S06/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S06/chr5.bam.pileup.gz > S06/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S06/chr6.bam.pileup.gz > S06/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S06/chr7.bam.pileup.gz > S06/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S06/chr8.bam.pileup.gz > S06/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S06/chr9.bam.pileup.gz > S06/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S06/chrX.bam.pileup.gz > S06/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S06/chrY.bam.pileup.gz > S06/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S07/chr1.bam.pileup.gz > S07/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S07/chr10.bam.pileup.gz > S07/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S07/chr11.bam.pileup.gz > S07/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S07/chr12.bam.pileup.gz > S07/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S07/chr13.bam.pileup.gz > S07/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S07/chr14.bam.pileup.gz > S07/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S07/chr15.bam.pileup.gz > S07/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S07/chr16.bam.pileup.gz > S07/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S07/chr17.bam.pileup.gz > S07/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S07/chr18.bam.pileup.gz > S07/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S07/chr19.bam.pileup.gz > S07/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S07/chr2.bam.pileup.gz > S07/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S07/chr20.bam.pileup.gz > S07/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S07/chr21.bam.pileup.gz > S07/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S07/chr22.bam.pileup.gz > S07/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S07/chr3.bam.pileup.gz > S07/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S07/chr4.bam.pileup.gz > S07/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S07/chr5.bam.pileup.gz > S07/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S07/chr6.bam.pileup.gz > S07/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S07/chr7.bam.pileup.gz > S07/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S07/chr8.bam.pileup.gz > S07/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S07/chr9.bam.pileup.gz > S07/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S07/chrX.bam.pileup.gz > S07/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S07/chrY.bam.pileup.gz > S07/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S08/chr1.bam.pileup.gz > S08/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S08/chr10.bam.pileup.gz > S08/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S08/chr11.bam.pileup.gz > S08/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S08/chr12.bam.pileup.gz > S08/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S08/chr13.bam.pileup.gz > S08/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S08/chr14.bam.pileup.gz > S08/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S08/chr15.bam.pileup.gz > S08/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S08/chr16.bam.pileup.gz > S08/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S08/chr17.bam.pileup.gz > S08/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S08/chr18.bam.pileup.gz > S08/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S08/chr19.bam.pileup.gz > S08/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S08/chr2.bam.pileup.gz > S08/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S08/chr20.bam.pileup.gz > S08/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S08/chr21.bam.pileup.gz > S08/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S08/chr22.bam.pileup.gz > S08/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S08/chr3.bam.pileup.gz > S08/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S08/chr4.bam.pileup.gz > S08/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S08/chr5.bam.pileup.gz > S08/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S08/chr6.bam.pileup.gz > S08/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S08/chr7.bam.pileup.gz > S08/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S08/chr8.bam.pileup.gz > S08/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S08/chr9.bam.pileup.gz > S08/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S08/chrX.bam.pileup.gz > S08/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S08/chrY.bam.pileup.gz > S08/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S09/chr1.bam.pileup.gz > S09/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S09/chr10.bam.pileup.gz > S09/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S09/chr11.bam.pileup.gz > S09/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S09/chr12.bam.pileup.gz > S09/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S09/chr13.bam.pileup.gz > S09/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S09/chr14.bam.pileup.gz > S09/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S09/chr15.bam.pileup.gz > S09/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S09/chr16.bam.pileup.gz > S09/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S09/chr17.bam.pileup.gz > S09/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S09/chr18.bam.pileup.gz > S09/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S09/chr19.bam.pileup.gz > S09/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S09/chr2.bam.pileup.gz > S09/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S09/chr20.bam.pileup.gz > S09/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S09/chr21.bam.pileup.gz > S09/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S09/chr22.bam.pileup.gz > S09/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S09/chr3.bam.pileup.gz > S09/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S09/chr4.bam.pileup.gz > S09/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S09/chr5.bam.pileup.gz > S09/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S09/chr6.bam.pileup.gz > S09/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S09/chr7.bam.pileup.gz > S09/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S09/chr8.bam.pileup.gz > S09/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S09/chr9.bam.pileup.gz > S09/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S09/chrX.bam.pileup.gz > S09/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S09/chrY.bam.pileup.gz > S09/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S10/chr1.bam.pileup.gz > S10/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S10/chr10.bam.pileup.gz > S10/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S10/chr11.bam.pileup.gz > S10/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S10/chr12.bam.pileup.gz > S10/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S10/chr13.bam.pileup.gz > S10/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S10/chr14.bam.pileup.gz > S10/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S10/chr15.bam.pileup.gz > S10/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S10/chr16.bam.pileup.gz > S10/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S10/chr17.bam.pileup.gz > S10/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S10/chr18.bam.pileup.gz > S10/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S10/chr19.bam.pileup.gz > S10/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S10/chr2.bam.pileup.gz > S10/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S10/chr20.bam.pileup.gz > S10/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S10/chr21.bam.pileup.gz > S10/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S10/chr22.bam.pileup.gz > S10/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S10/chr3.bam.pileup.gz > S10/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S10/chr4.bam.pileup.gz > S10/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S10/chr5.bam.pileup.gz > S10/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S10/chr6.bam.pileup.gz > S10/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S10/chr7.bam.pileup.gz > S10/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S10/chr8.bam.pileup.gz > S10/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S10/chr9.bam.pileup.gz > S10/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S10/chrX.bam.pileup.gz > S10/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S10/chrY.bam.pileup.gz > S10/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S11/chr1.bam.pileup.gz > S11/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S11/chr10.bam.pileup.gz > S11/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S11/chr11.bam.pileup.gz > S11/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S11/chr12.bam.pileup.gz > S11/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S11/chr13.bam.pileup.gz > S11/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S11/chr14.bam.pileup.gz > S11/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S11/chr15.bam.pileup.gz > S11/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S11/chr16.bam.pileup.gz > S11/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S11/chr17.bam.pileup.gz > S11/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S11/chr18.bam.pileup.gz > S11/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S11/chr19.bam.pileup.gz > S11/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S11/chr2.bam.pileup.gz > S11/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S11/chr20.bam.pileup.gz > S11/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S11/chr21.bam.pileup.gz > S11/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S11/chr22.bam.pileup.gz > S11/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S11/chr3.bam.pileup.gz > S11/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S11/chr4.bam.pileup.gz > S11/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S11/chr5.bam.pileup.gz > S11/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S11/chr6.bam.pileup.gz > S11/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S11/chr7.bam.pileup.gz > S11/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S11/chr8.bam.pileup.gz > S11/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S11/chr9.bam.pileup.gz > S11/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S11/chrX.bam.pileup.gz > S11/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S11/chrY.bam.pileup.gz > S11/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S12/chr1.bam.pileup.gz > S12/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S12/chr10.bam.pileup.gz > S12/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S12/chr11.bam.pileup.gz > S12/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S12/chr12.bam.pileup.gz > S12/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S12/chr13.bam.pileup.gz > S12/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S12/chr14.bam.pileup.gz > S12/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S12/chr15.bam.pileup.gz > S12/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S12/chr16.bam.pileup.gz > S12/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S12/chr17.bam.pileup.gz > S12/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S12/chr18.bam.pileup.gz > S12/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S12/chr19.bam.pileup.gz > S12/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S12/chr2.bam.pileup.gz > S12/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S12/chr20.bam.pileup.gz > S12/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S12/chr21.bam.pileup.gz > S12/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S12/chr22.bam.pileup.gz > S12/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S12/chr3.bam.pileup.gz > S12/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S12/chr4.bam.pileup.gz > S12/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S12/chr5.bam.pileup.gz > S12/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S12/chr6.bam.pileup.gz > S12/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S12/chr7.bam.pileup.gz > S12/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S12/chr8.bam.pileup.gz > S12/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S12/chr9.bam.pileup.gz > S12/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S12/chrX.bam.pileup.gz > S12/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S12/chrY.bam.pileup.gz > S12/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S13/chr1.bam.pileup.gz > S13/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S13/chr10.bam.pileup.gz > S13/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S13/chr11.bam.pileup.gz > S13/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S13/chr12.bam.pileup.gz > S13/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S13/chr13.bam.pileup.gz > S13/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S13/chr14.bam.pileup.gz > S13/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S13/chr15.bam.pileup.gz > S13/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S13/chr16.bam.pileup.gz > S13/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S13/chr17.bam.pileup.gz > S13/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S13/chr18.bam.pileup.gz > S13/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S13/chr19.bam.pileup.gz > S13/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S13/chr2.bam.pileup.gz > S13/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S13/chr20.bam.pileup.gz > S13/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S13/chr21.bam.pileup.gz > S13/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S13/chr22.bam.pileup.gz > S13/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S13/chr3.bam.pileup.gz > S13/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S13/chr4.bam.pileup.gz > S13/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S13/chr5.bam.pileup.gz > S13/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S13/chr6.bam.pileup.gz > S13/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S13/chr7.bam.pileup.gz > S13/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S13/chr8.bam.pileup.gz > S13/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S13/chr9.bam.pileup.gz > S13/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S13/chrX.bam.pileup.gz > S13/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S13/chrY.bam.pileup.gz > S13/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S14/chr1.bam.pileup.gz > S14/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S14/chr10.bam.pileup.gz > S14/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S14/chr11.bam.pileup.gz > S14/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S14/chr12.bam.pileup.gz > S14/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S14/chr13.bam.pileup.gz > S14/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S14/chr14.bam.pileup.gz > S14/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S14/chr15.bam.pileup.gz > S14/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S14/chr16.bam.pileup.gz > S14/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S14/chr17.bam.pileup.gz > S14/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S14/chr18.bam.pileup.gz > S14/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S14/chr19.bam.pileup.gz > S14/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S14/chr2.bam.pileup.gz > S14/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S14/chr20.bam.pileup.gz > S14/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S14/chr21.bam.pileup.gz > S14/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S14/chr22.bam.pileup.gz > S14/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S14/chr3.bam.pileup.gz > S14/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S14/chr4.bam.pileup.gz > S14/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S14/chr5.bam.pileup.gz > S14/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S14/chr6.bam.pileup.gz > S14/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S14/chr7.bam.pileup.gz > S14/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S14/chr8.bam.pileup.gz > S14/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S14/chr9.bam.pileup.gz > S14/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S14/chrX.bam.pileup.gz > S14/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S14/chrY.bam.pileup.gz > S14/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S15/chr1.bam.pileup.gz > S15/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S15/chr10.bam.pileup.gz > S15/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S15/chr11.bam.pileup.gz > S15/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S15/chr12.bam.pileup.gz > S15/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S15/chr13.bam.pileup.gz > S15/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S15/chr14.bam.pileup.gz > S15/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S15/chr15.bam.pileup.gz > S15/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S15/chr16.bam.pileup.gz > S15/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S15/chr17.bam.pileup.gz > S15/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S15/chr18.bam.pileup.gz > S15/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S15/chr19.bam.pileup.gz > S15/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S15/chr2.bam.pileup.gz > S15/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S15/chr20.bam.pileup.gz > S15/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S15/chr21.bam.pileup.gz > S15/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S15/chr22.bam.pileup.gz > S15/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S15/chr3.bam.pileup.gz > S15/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S15/chr4.bam.pileup.gz > S15/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S15/chr5.bam.pileup.gz > S15/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S15/chr6.bam.pileup.gz > S15/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S15/chr7.bam.pileup.gz > S15/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S15/chr8.bam.pileup.gz > S15/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S15/chr9.bam.pileup.gz > S15/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S15/chrX.bam.pileup.gz > S15/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S15/chrY.bam.pileup.gz > S15/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S16/chr1.bam.pileup.gz > S16/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S16/chr10.bam.pileup.gz > S16/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S16/chr11.bam.pileup.gz > S16/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S16/chr12.bam.pileup.gz > S16/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S16/chr13.bam.pileup.gz > S16/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S16/chr14.bam.pileup.gz > S16/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S16/chr15.bam.pileup.gz > S16/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S16/chr16.bam.pileup.gz > S16/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S16/chr17.bam.pileup.gz > S16/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S16/chr18.bam.pileup.gz > S16/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S16/chr19.bam.pileup.gz > S16/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S16/chr2.bam.pileup.gz > S16/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S16/chr20.bam.pileup.gz > S16/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S16/chr21.bam.pileup.gz > S16/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S16/chr22.bam.pileup.gz > S16/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S16/chr3.bam.pileup.gz > S16/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S16/chr4.bam.pileup.gz > S16/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S16/chr5.bam.pileup.gz > S16/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S16/chr6.bam.pileup.gz > S16/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S16/chr7.bam.pileup.gz > S16/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S16/chr8.bam.pileup.gz > S16/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S16/chr9.bam.pileup.gz > S16/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S16/chrX.bam.pileup.gz > S16/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S16/chrY.bam.pileup.gz > S16/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S17/chr1.bam.pileup.gz > S17/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S17/chr10.bam.pileup.gz > S17/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S17/chr11.bam.pileup.gz > S17/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S17/chr12.bam.pileup.gz > S17/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S17/chr13.bam.pileup.gz > S17/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S17/chr14.bam.pileup.gz > S17/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S17/chr15.bam.pileup.gz > S17/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S17/chr16.bam.pileup.gz > S17/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S17/chr17.bam.pileup.gz > S17/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S17/chr18.bam.pileup.gz > S17/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S17/chr19.bam.pileup.gz > S17/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S17/chr2.bam.pileup.gz > S17/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S17/chr20.bam.pileup.gz > S17/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S17/chr21.bam.pileup.gz > S17/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S17/chr22.bam.pileup.gz > S17/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S17/chr3.bam.pileup.gz > S17/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S17/chr4.bam.pileup.gz > S17/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S17/chr5.bam.pileup.gz > S17/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S17/chr6.bam.pileup.gz > S17/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S17/chr7.bam.pileup.gz > S17/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S17/chr8.bam.pileup.gz > S17/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S17/chr9.bam.pileup.gz > S17/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S17/chrX.bam.pileup.gz > S17/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S17/chrY.bam.pileup.gz > S17/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S18/chr1.bam.pileup.gz > S18/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S18/chr10.bam.pileup.gz > S18/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S18/chr11.bam.pileup.gz > S18/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S18/chr12.bam.pileup.gz > S18/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S18/chr13.bam.pileup.gz > S18/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S18/chr14.bam.pileup.gz > S18/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S18/chr15.bam.pileup.gz > S18/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S18/chr16.bam.pileup.gz > S18/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S18/chr17.bam.pileup.gz > S18/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S18/chr18.bam.pileup.gz > S18/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S18/chr19.bam.pileup.gz > S18/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S18/chr2.bam.pileup.gz > S18/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S18/chr20.bam.pileup.gz > S18/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S18/chr21.bam.pileup.gz > S18/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S18/chr22.bam.pileup.gz > S18/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S18/chr3.bam.pileup.gz > S18/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S18/chr4.bam.pileup.gz > S18/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S18/chr5.bam.pileup.gz > S18/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S18/chr6.bam.pileup.gz > S18/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S18/chr7.bam.pileup.gz > S18/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S18/chr8.bam.pileup.gz > S18/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S18/chr9.bam.pileup.gz > S18/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S18/chrX.bam.pileup.gz > S18/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S18/chrY.bam.pileup.gz > S18/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S19/chr1.bam.pileup.gz > S19/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S19/chr10.bam.pileup.gz > S19/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S19/chr11.bam.pileup.gz > S19/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S19/chr12.bam.pileup.gz > S19/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S19/chr13.bam.pileup.gz > S19/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S19/chr14.bam.pileup.gz > S19/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S19/chr15.bam.pileup.gz > S19/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S19/chr16.bam.pileup.gz > S19/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S19/chr17.bam.pileup.gz > S19/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S19/chr18.bam.pileup.gz > S19/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S19/chr19.bam.pileup.gz > S19/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S19/chr2.bam.pileup.gz > S19/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S19/chr20.bam.pileup.gz > S19/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S19/chr21.bam.pileup.gz > S19/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S19/chr22.bam.pileup.gz > S19/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S19/chr3.bam.pileup.gz > S19/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S19/chr4.bam.pileup.gz > S19/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S19/chr5.bam.pileup.gz > S19/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S19/chr6.bam.pileup.gz > S19/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S19/chr7.bam.pileup.gz > S19/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S19/chr8.bam.pileup.gz > S19/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S19/chr9.bam.pileup.gz > S19/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S19/chrX.bam.pileup.gz > S19/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S19/chrY.bam.pileup.gz > S19/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S20/chr1.bam.pileup.gz > S20/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S20/chr10.bam.pileup.gz > S20/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S20/chr11.bam.pileup.gz > S20/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S20/chr12.bam.pileup.gz > S20/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S20/chr13.bam.pileup.gz > S20/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S20/chr14.bam.pileup.gz > S20/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S20/chr15.bam.pileup.gz > S20/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S20/chr16.bam.pileup.gz > S20/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S20/chr17.bam.pileup.gz > S20/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S20/chr18.bam.pileup.gz > S20/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S20/chr19.bam.pileup.gz > S20/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S20/chr2.bam.pileup.gz > S20/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S20/chr20.bam.pileup.gz > S20/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S20/chr21.bam.pileup.gz > S20/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S20/chr22.bam.pileup.gz > S20/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S20/chr3.bam.pileup.gz > S20/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S20/chr4.bam.pileup.gz > S20/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S20/chr5.bam.pileup.gz > S20/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S20/chr6.bam.pileup.gz > S20/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S20/chr7.bam.pileup.gz > S20/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S20/chr8.bam.pileup.gz > S20/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S20/chr9.bam.pileup.gz > S20/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S20/chrX.bam.pileup.gz > S20/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S20/chrY.bam.pileup.gz > S20/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S21/chr1.bam.pileup.gz > S21/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S21/chr10.bam.pileup.gz > S21/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S21/chr11.bam.pileup.gz > S21/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S21/chr12.bam.pileup.gz > S21/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S21/chr13.bam.pileup.gz > S21/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S21/chr14.bam.pileup.gz > S21/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S21/chr15.bam.pileup.gz > S21/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S21/chr16.bam.pileup.gz > S21/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S21/chr17.bam.pileup.gz > S21/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S21/chr18.bam.pileup.gz > S21/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S21/chr19.bam.pileup.gz > S21/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S21/chr2.bam.pileup.gz > S21/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S21/chr20.bam.pileup.gz > S21/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S21/chr21.bam.pileup.gz > S21/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S21/chr22.bam.pileup.gz > S21/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S21/chr3.bam.pileup.gz > S21/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S21/chr4.bam.pileup.gz > S21/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S21/chr5.bam.pileup.gz > S21/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S21/chr6.bam.pileup.gz > S21/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S21/chr7.bam.pileup.gz > S21/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S21/chr8.bam.pileup.gz > S21/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S21/chr9.bam.pileup.gz > S21/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S21/chrX.bam.pileup.gz > S21/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S21/chrY.bam.pileup.gz > S21/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S22/chr1.bam.pileup.gz > S22/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S22/chr10.bam.pileup.gz > S22/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S22/chr11.bam.pileup.gz > S22/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S22/chr12.bam.pileup.gz > S22/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S22/chr13.bam.pileup.gz > S22/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S22/chr14.bam.pileup.gz > S22/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S22/chr15.bam.pileup.gz > S22/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S22/chr16.bam.pileup.gz > S22/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S22/chr17.bam.pileup.gz > S22/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S22/chr18.bam.pileup.gz > S22/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S22/chr19.bam.pileup.gz > S22/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S22/chr2.bam.pileup.gz > S22/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S22/chr20.bam.pileup.gz > S22/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S22/chr21.bam.pileup.gz > S22/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S22/chr22.bam.pileup.gz > S22/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S22/chr3.bam.pileup.gz > S22/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S22/chr4.bam.pileup.gz > S22/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S22/chr5.bam.pileup.gz > S22/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S22/chr6.bam.pileup.gz > S22/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S22/chr7.bam.pileup.gz > S22/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S22/chr8.bam.pileup.gz > S22/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S22/chr9.bam.pileup.gz > S22/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S22/chrX.bam.pileup.gz > S22/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S22/chrY.bam.pileup.gz > S22/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S23/chr1.bam.pileup.gz > S23/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S23/chr10.bam.pileup.gz > S23/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S23/chr11.bam.pileup.gz > S23/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S23/chr12.bam.pileup.gz > S23/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S23/chr13.bam.pileup.gz > S23/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S23/chr14.bam.pileup.gz > S23/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S23/chr15.bam.pileup.gz > S23/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S23/chr16.bam.pileup.gz > S23/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S23/chr17.bam.pileup.gz > S23/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S23/chr18.bam.pileup.gz > S23/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S23/chr19.bam.pileup.gz > S23/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S23/chr2.bam.pileup.gz > S23/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S23/chr20.bam.pileup.gz > S23/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S23/chr21.bam.pileup.gz > S23/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S23/chr22.bam.pileup.gz > S23/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S23/chr3.bam.pileup.gz > S23/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S23/chr4.bam.pileup.gz > S23/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S23/chr5.bam.pileup.gz > S23/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S23/chr6.bam.pileup.gz > S23/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S23/chr7.bam.pileup.gz > S23/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S23/chr8.bam.pileup.gz > S23/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S23/chr9.bam.pileup.gz > S23/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S23/chrX.bam.pileup.gz > S23/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S23/chrY.bam.pileup.gz > S23/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S24/chr1.bam.pileup.gz > S24/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S24/chr10.bam.pileup.gz > S24/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S24/chr11.bam.pileup.gz > S24/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S24/chr12.bam.pileup.gz > S24/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S24/chr13.bam.pileup.gz > S24/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S24/chr14.bam.pileup.gz > S24/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S24/chr15.bam.pileup.gz > S24/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S24/chr16.bam.pileup.gz > S24/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S24/chr17.bam.pileup.gz > S24/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S24/chr18.bam.pileup.gz > S24/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S24/chr19.bam.pileup.gz > S24/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S24/chr2.bam.pileup.gz > S24/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S24/chr20.bam.pileup.gz > S24/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S24/chr21.bam.pileup.gz > S24/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S24/chr22.bam.pileup.gz > S24/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S24/chr3.bam.pileup.gz > S24/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S24/chr4.bam.pileup.gz > S24/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S24/chr5.bam.pileup.gz > S24/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S24/chr6.bam.pileup.gz > S24/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S24/chr7.bam.pileup.gz > S24/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S24/chr8.bam.pileup.gz > S24/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S24/chr9.bam.pileup.gz > S24/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S24/chrX.bam.pileup.gz > S24/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S24/chrY.bam.pileup.gz > S24/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S25/chr1.bam.pileup.gz > S25/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S25/chr10.bam.pileup.gz > S25/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S25/chr11.bam.pileup.gz > S25/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S25/chr12.bam.pileup.gz > S25/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S25/chr13.bam.pileup.gz > S25/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S25/chr14.bam.pileup.gz > S25/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S25/chr15.bam.pileup.gz > S25/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S25/chr16.bam.pileup.gz > S25/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S25/chr17.bam.pileup.gz > S25/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S25/chr18.bam.pileup.gz > S25/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S25/chr19.bam.pileup.gz > S25/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S25/chr2.bam.pileup.gz > S25/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S25/chr20.bam.pileup.gz > S25/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S25/chr21.bam.pileup.gz > S25/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S25/chr22.bam.pileup.gz > S25/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S25/chr3.bam.pileup.gz > S25/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S25/chr4.bam.pileup.gz > S25/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S25/chr5.bam.pileup.gz > S25/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S25/chr6.bam.pileup.gz > S25/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S25/chr7.bam.pileup.gz > S25/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S25/chr8.bam.pileup.gz > S25/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S25/chr9.bam.pileup.gz > S25/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S25/chrX.bam.pileup.gz > S25/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S25/chrY.bam.pileup.gz > S25/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S26/chr1.bam.pileup.gz > S26/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S26/chr10.bam.pileup.gz > S26/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S26/chr11.bam.pileup.gz > S26/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S26/chr12.bam.pileup.gz > S26/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S26/chr13.bam.pileup.gz > S26/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S26/chr14.bam.pileup.gz > S26/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S26/chr15.bam.pileup.gz > S26/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S26/chr16.bam.pileup.gz > S26/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S26/chr17.bam.pileup.gz > S26/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S26/chr18.bam.pileup.gz > S26/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S26/chr19.bam.pileup.gz > S26/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S26/chr2.bam.pileup.gz > S26/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S26/chr20.bam.pileup.gz > S26/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S26/chr21.bam.pileup.gz > S26/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S26/chr22.bam.pileup.gz > S26/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S26/chr3.bam.pileup.gz > S26/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S26/chr4.bam.pileup.gz > S26/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S26/chr5.bam.pileup.gz > S26/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S26/chr6.bam.pileup.gz > S26/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S26/chr7.bam.pileup.gz > S26/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S26/chr8.bam.pileup.gz > S26/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S26/chr9.bam.pileup.gz > S26/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S26/chrX.bam.pileup.gz > S26/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S26/chrY.bam.pileup.gz > S26/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S27/chr1.bam.pileup.gz > S27/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S27/chr10.bam.pileup.gz > S27/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S27/chr11.bam.pileup.gz > S27/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S27/chr12.bam.pileup.gz > S27/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S27/chr13.bam.pileup.gz > S27/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S27/chr14.bam.pileup.gz > S27/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S27/chr15.bam.pileup.gz > S27/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S27/chr16.bam.pileup.gz > S27/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S27/chr17.bam.pileup.gz > S27/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S27/chr18.bam.pileup.gz > S27/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S27/chr19.bam.pileup.gz > S27/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S27/chr2.bam.pileup.gz > S27/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S27/chr20.bam.pileup.gz > S27/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S27/chr21.bam.pileup.gz > S27/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S27/chr22.bam.pileup.gz > S27/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S27/chr3.bam.pileup.gz > S27/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S27/chr4.bam.pileup.gz > S27/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S27/chr5.bam.pileup.gz > S27/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S27/chr6.bam.pileup.gz > S27/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S27/chr7.bam.pileup.gz > S27/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S27/chr8.bam.pileup.gz > S27/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S27/chr9.bam.pileup.gz > S27/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S27/chrX.bam.pileup.gz > S27/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S27/chrY.bam.pileup.gz > S27/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S28/chr1.bam.pileup.gz > S28/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S28/chr10.bam.pileup.gz > S28/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S28/chr11.bam.pileup.gz > S28/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S28/chr12.bam.pileup.gz > S28/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S28/chr13.bam.pileup.gz > S28/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S28/chr14.bam.pileup.gz > S28/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S28/chr15.bam.pileup.gz > S28/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S28/chr16.bam.pileup.gz > S28/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S28/chr17.bam.pileup.gz > S28/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S28/chr18.bam.pileup.gz > S28/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S28/chr19.bam.pileup.gz > S28/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S28/chr2.bam.pileup.gz > S28/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S28/chr20.bam.pileup.gz > S28/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S28/chr21.bam.pileup.gz > S28/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S28/chr22.bam.pileup.gz > S28/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S28/chr3.bam.pileup.gz > S28/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S28/chr4.bam.pileup.gz > S28/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S28/chr5.bam.pileup.gz > S28/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S28/chr6.bam.pileup.gz > S28/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S28/chr7.bam.pileup.gz > S28/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S28/chr8.bam.pileup.gz > S28/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S28/chr9.bam.pileup.gz > S28/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S28/chrX.bam.pileup.gz > S28/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S28/chrY.bam.pileup.gz > S28/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S29/chr1.bam.pileup.gz > S29/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S29/chr10.bam.pileup.gz > S29/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S29/chr11.bam.pileup.gz > S29/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S29/chr12.bam.pileup.gz > S29/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S29/chr13.bam.pileup.gz > S29/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S29/chr14.bam.pileup.gz > S29/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S29/chr15.bam.pileup.gz > S29/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S29/chr16.bam.pileup.gz > S29/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S29/chr17.bam.pileup.gz > S29/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S29/chr18.bam.pileup.gz > S29/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S29/chr19.bam.pileup.gz > S29/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S29/chr2.bam.pileup.gz > S29/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S29/chr20.bam.pileup.gz > S29/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S29/chr21.bam.pileup.gz > S29/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S29/chr22.bam.pileup.gz > S29/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S29/chr3.bam.pileup.gz > S29/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S29/chr4.bam.pileup.gz > S29/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S29/chr5.bam.pileup.gz > S29/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S29/chr6.bam.pileup.gz > S29/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S29/chr7.bam.pileup.gz > S29/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S29/chr8.bam.pileup.gz > S29/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S29/chr9.bam.pileup.gz > S29/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S29/chrX.bam.pileup.gz > S29/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S29/chrY.bam.pileup.gz > S29/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S30/chr1.bam.pileup.gz > S30/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S30/chr10.bam.pileup.gz > S30/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S30/chr11.bam.pileup.gz > S30/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S30/chr12.bam.pileup.gz > S30/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S30/chr13.bam.pileup.gz > S30/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S30/chr14.bam.pileup.gz > S30/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S30/chr15.bam.pileup.gz > S30/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S30/chr16.bam.pileup.gz > S30/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S30/chr17.bam.pileup.gz > S30/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S30/chr18.bam.pileup.gz > S30/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S30/chr19.bam.pileup.gz > S30/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S30/chr2.bam.pileup.gz > S30/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S30/chr20.bam.pileup.gz > S30/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S30/chr21.bam.pileup.gz > S30/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S30/chr22.bam.pileup.gz > S30/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S30/chr3.bam.pileup.gz > S30/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S30/chr4.bam.pileup.gz > S30/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S30/chr5.bam.pileup.gz > S30/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S30/chr6.bam.pileup.gz > S30/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S30/chr7.bam.pileup.gz > S30/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S30/chr8.bam.pileup.gz > S30/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S30/chr9.bam.pileup.gz > S30/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S30/chrX.bam.pileup.gz > S30/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S30/chrY.bam.pileup.gz > S30/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S31/chr1.bam.pileup.gz > S31/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S31/chr10.bam.pileup.gz > S31/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S31/chr11.bam.pileup.gz > S31/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S31/chr12.bam.pileup.gz > S31/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S31/chr13.bam.pileup.gz > S31/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S31/chr14.bam.pileup.gz > S31/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S31/chr15.bam.pileup.gz > S31/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S31/chr16.bam.pileup.gz > S31/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S31/chr17.bam.pileup.gz > S31/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S31/chr18.bam.pileup.gz > S31/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S31/chr19.bam.pileup.gz > S31/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S31/chr2.bam.pileup.gz > S31/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S31/chr20.bam.pileup.gz > S31/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S31/chr21.bam.pileup.gz > S31/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S31/chr22.bam.pileup.gz > S31/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S31/chr3.bam.pileup.gz > S31/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S31/chr4.bam.pileup.gz > S31/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S31/chr5.bam.pileup.gz > S31/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S31/chr6.bam.pileup.gz > S31/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S31/chr7.bam.pileup.gz > S31/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S31/chr8.bam.pileup.gz > S31/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S31/chr9.bam.pileup.gz > S31/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S31/chrX.bam.pileup.gz > S31/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S31/chrY.bam.pileup.gz > S31/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S32/chr1.bam.pileup.gz > S32/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S32/chr10.bam.pileup.gz > S32/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S32/chr11.bam.pileup.gz > S32/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S32/chr12.bam.pileup.gz > S32/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S32/chr13.bam.pileup.gz > S32/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S32/chr14.bam.pileup.gz > S32/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S32/chr15.bam.pileup.gz > S32/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S32/chr16.bam.pileup.gz > S32/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S32/chr17.bam.pileup.gz > S32/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S32/chr18.bam.pileup.gz > S32/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S32/chr19.bam.pileup.gz > S32/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S32/chr2.bam.pileup.gz > S32/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S32/chr20.bam.pileup.gz > S32/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S32/chr21.bam.pileup.gz > S32/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S32/chr22.bam.pileup.gz > S32/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S32/chr3.bam.pileup.gz > S32/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S32/chr4.bam.pileup.gz > S32/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S32/chr5.bam.pileup.gz > S32/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S32/chr6.bam.pileup.gz > S32/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S32/chr7.bam.pileup.gz > S32/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S32/chr8.bam.pileup.gz > S32/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S32/chr9.bam.pileup.gz > S32/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S32/chrX.bam.pileup.gz > S32/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S32/chrY.bam.pileup.gz > S32/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S33/chr1.bam.pileup.gz > S33/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S33/chr10.bam.pileup.gz > S33/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S33/chr11.bam.pileup.gz > S33/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S33/chr12.bam.pileup.gz > S33/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S33/chr13.bam.pileup.gz > S33/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S33/chr14.bam.pileup.gz > S33/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S33/chr15.bam.pileup.gz > S33/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S33/chr16.bam.pileup.gz > S33/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S33/chr17.bam.pileup.gz > S33/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S33/chr18.bam.pileup.gz > S33/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S33/chr19.bam.pileup.gz > S33/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S33/chr2.bam.pileup.gz > S33/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S33/chr20.bam.pileup.gz > S33/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S33/chr21.bam.pileup.gz > S33/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S33/chr22.bam.pileup.gz > S33/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S33/chr3.bam.pileup.gz > S33/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S33/chr4.bam.pileup.gz > S33/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S33/chr5.bam.pileup.gz > S33/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S33/chr6.bam.pileup.gz > S33/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S33/chr7.bam.pileup.gz > S33/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S33/chr8.bam.pileup.gz > S33/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S33/chr9.bam.pileup.gz > S33/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S33/chrX.bam.pileup.gz > S33/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S33/chrY.bam.pileup.gz > S33/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S34/chr1.bam.pileup.gz > S34/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S34/chr10.bam.pileup.gz > S34/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S34/chr11.bam.pileup.gz > S34/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S34/chr12.bam.pileup.gz > S34/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S34/chr13.bam.pileup.gz > S34/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S34/chr14.bam.pileup.gz > S34/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S34/chr15.bam.pileup.gz > S34/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S34/chr16.bam.pileup.gz > S34/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S34/chr17.bam.pileup.gz > S34/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S34/chr18.bam.pileup.gz > S34/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S34/chr19.bam.pileup.gz > S34/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S34/chr2.bam.pileup.gz > S34/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S34/chr20.bam.pileup.gz > S34/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S34/chr21.bam.pileup.gz > S34/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S34/chr22.bam.pileup.gz > S34/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S34/chr3.bam.pileup.gz > S34/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S34/chr4.bam.pileup.gz > S34/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S34/chr5.bam.pileup.gz > S34/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S34/chr6.bam.pileup.gz > S34/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S34/chr7.bam.pileup.gz > S34/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S34/chr8.bam.pileup.gz > S34/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S34/chr9.bam.pileup.gz > S34/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S34/chrX.bam.pileup.gz > S34/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S34/chrY.bam.pileup.gz > S34/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S35/chr1.bam.pileup.gz > S35/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S35/chr10.bam.pileup.gz > S35/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S35/chr11.bam.pileup.gz > S35/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S35/chr12.bam.pileup.gz > S35/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S35/chr13.bam.pileup.gz > S35/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S35/chr14.bam.pileup.gz > S35/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S35/chr15.bam.pileup.gz > S35/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S35/chr16.bam.pileup.gz > S35/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S35/chr17.bam.pileup.gz > S35/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S35/chr18.bam.pileup.gz > S35/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S35/chr19.bam.pileup.gz > S35/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S35/chr2.bam.pileup.gz > S35/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S35/chr20.bam.pileup.gz > S35/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S35/chr21.bam.pileup.gz > S35/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S35/chr22.bam.pileup.gz > S35/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S35/chr3.bam.pileup.gz > S35/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S35/chr4.bam.pileup.gz > S35/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S35/chr5.bam.pileup.gz > S35/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S35/chr6.bam.pileup.gz > S35/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S35/chr7.bam.pileup.gz > S35/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S35/chr8.bam.pileup.gz > S35/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S35/chr9.bam.pileup.gz > S35/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S35/chrX.bam.pileup.gz > S35/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S35/chrY.bam.pileup.gz > S35/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S36/chr1.bam.pileup.gz > S36/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S36/chr10.bam.pileup.gz > S36/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S36/chr11.bam.pileup.gz > S36/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S36/chr12.bam.pileup.gz > S36/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S36/chr13.bam.pileup.gz > S36/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S36/chr14.bam.pileup.gz > S36/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S36/chr15.bam.pileup.gz > S36/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S36/chr16.bam.pileup.gz > S36/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S36/chr17.bam.pileup.gz > S36/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S36/chr18.bam.pileup.gz > S36/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S36/chr19.bam.pileup.gz > S36/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S36/chr2.bam.pileup.gz > S36/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S36/chr20.bam.pileup.gz > S36/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S36/chr21.bam.pileup.gz > S36/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S36/chr22.bam.pileup.gz > S36/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S36/chr3.bam.pileup.gz > S36/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S36/chr4.bam.pileup.gz > S36/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S36/chr5.bam.pileup.gz > S36/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S36/chr6.bam.pileup.gz > S36/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S36/chr7.bam.pileup.gz > S36/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S36/chr8.bam.pileup.gz > S36/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S36/chr9.bam.pileup.gz > S36/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S36/chrX.bam.pileup.gz > S36/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S36/chrY.bam.pileup.gz > S36/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S37/chr1.bam.pileup.gz > S37/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S37/chr10.bam.pileup.gz > S37/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S37/chr11.bam.pileup.gz > S37/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S37/chr12.bam.pileup.gz > S37/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S37/chr13.bam.pileup.gz > S37/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S37/chr14.bam.pileup.gz > S37/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S37/chr15.bam.pileup.gz > S37/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S37/chr16.bam.pileup.gz > S37/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S37/chr17.bam.pileup.gz > S37/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S37/chr18.bam.pileup.gz > S37/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S37/chr19.bam.pileup.gz > S37/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S37/chr2.bam.pileup.gz > S37/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S37/chr20.bam.pileup.gz > S37/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S37/chr21.bam.pileup.gz > S37/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S37/chr22.bam.pileup.gz > S37/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S37/chr3.bam.pileup.gz > S37/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S37/chr4.bam.pileup.gz > S37/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S37/chr5.bam.pileup.gz > S37/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S37/chr6.bam.pileup.gz > S37/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S37/chr7.bam.pileup.gz > S37/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S37/chr8.bam.pileup.gz > S37/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S37/chr9.bam.pileup.gz > S37/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S37/chrX.bam.pileup.gz > S37/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S37/chrY.bam.pileup.gz > S37/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S38/chr1.bam.pileup.gz > S38/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S38/chr10.bam.pileup.gz > S38/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S38/chr11.bam.pileup.gz > S38/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S38/chr12.bam.pileup.gz > S38/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S38/chr13.bam.pileup.gz > S38/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S38/chr14.bam.pileup.gz > S38/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S38/chr15.bam.pileup.gz > S38/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S38/chr16.bam.pileup.gz > S38/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S38/chr17.bam.pileup.gz > S38/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S38/chr18.bam.pileup.gz > S38/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S38/chr19.bam.pileup.gz > S38/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S38/chr2.bam.pileup.gz > S38/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S38/chr20.bam.pileup.gz > S38/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S38/chr21.bam.pileup.gz > S38/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S38/chr22.bam.pileup.gz > S38/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S38/chr3.bam.pileup.gz > S38/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S38/chr4.bam.pileup.gz > S38/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S38/chr5.bam.pileup.gz > S38/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S38/chr6.bam.pileup.gz > S38/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S38/chr7.bam.pileup.gz > S38/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S38/chr8.bam.pileup.gz > S38/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S38/chr9.bam.pileup.gz > S38/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S38/chrX.bam.pileup.gz > S38/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S38/chrY.bam.pileup.gz > S38/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S39/chr1.bam.pileup.gz > S39/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S39/chr10.bam.pileup.gz > S39/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S39/chr11.bam.pileup.gz > S39/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S39/chr12.bam.pileup.gz > S39/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S39/chr13.bam.pileup.gz > S39/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S39/chr14.bam.pileup.gz > S39/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S39/chr15.bam.pileup.gz > S39/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S39/chr16.bam.pileup.gz > S39/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S39/chr17.bam.pileup.gz > S39/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S39/chr18.bam.pileup.gz > S39/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S39/chr19.bam.pileup.gz > S39/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S39/chr2.bam.pileup.gz > S39/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S39/chr20.bam.pileup.gz > S39/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S39/chr21.bam.pileup.gz > S39/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S39/chr22.bam.pileup.gz > S39/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S39/chr3.bam.pileup.gz > S39/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S39/chr4.bam.pileup.gz > S39/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S39/chr5.bam.pileup.gz > S39/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S39/chr6.bam.pileup.gz > S39/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S39/chr7.bam.pileup.gz > S39/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S39/chr8.bam.pileup.gz > S39/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S39/chr9.bam.pileup.gz > S39/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S39/chrX.bam.pileup.gz > S39/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S39/chrY.bam.pileup.gz > S39/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S40/chr1.bam.pileup.gz > S40/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S40/chr10.bam.pileup.gz > S40/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S40/chr11.bam.pileup.gz > S40/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S40/chr12.bam.pileup.gz > S40/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S40/chr13.bam.pileup.gz > S40/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S40/chr14.bam.pileup.gz > S40/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S40/chr15.bam.pileup.gz > S40/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S40/chr16.bam.pileup.gz > S40/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S40/chr17.bam.pileup.gz > S40/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S40/chr18.bam.pileup.gz > S40/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S40/chr19.bam.pileup.gz > S40/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S40/chr2.bam.pileup.gz > S40/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S40/chr20.bam.pileup.gz > S40/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S40/chr21.bam.pileup.gz > S40/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S40/chr22.bam.pileup.gz > S40/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S40/chr3.bam.pileup.gz > S40/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S40/chr4.bam.pileup.gz > S40/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S40/chr5.bam.pileup.gz > S40/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S40/chr6.bam.pileup.gz > S40/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S40/chr7.bam.pileup.gz > S40/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S40/chr8.bam.pileup.gz > S40/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S40/chr9.bam.pileup.gz > S40/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S40/chrX.bam.pileup.gz > S40/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S40/chrY.bam.pileup.gz > S40/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S41/chr1.bam.pileup.gz > S41/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S41/chr10.bam.pileup.gz > S41/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S41/chr11.bam.pileup.gz > S41/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S41/chr12.bam.pileup.gz > S41/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S41/chr13.bam.pileup.gz > S41/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S41/chr14.bam.pileup.gz > S41/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S41/chr15.bam.pileup.gz > S41/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S41/chr16.bam.pileup.gz > S41/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S41/chr17.bam.pileup.gz > S41/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S41/chr18.bam.pileup.gz > S41/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S41/chr19.bam.pileup.gz > S41/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S41/chr2.bam.pileup.gz > S41/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S41/chr20.bam.pileup.gz > S41/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S41/chr21.bam.pileup.gz > S41/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S41/chr22.bam.pileup.gz > S41/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S41/chr3.bam.pileup.gz > S41/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S41/chr4.bam.pileup.gz > S41/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S41/chr5.bam.pileup.gz > S41/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S41/chr6.bam.pileup.gz > S41/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S41/chr7.bam.pileup.gz > S41/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S41/chr8.bam.pileup.gz > S41/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S41/chr9.bam.pileup.gz > S41/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S41/chrX.bam.pileup.gz > S41/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S41/chrY.bam.pileup.gz > S41/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S42/chr1.bam.pileup.gz > S42/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S42/chr10.bam.pileup.gz > S42/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S42/chr11.bam.pileup.gz > S42/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S42/chr12.bam.pileup.gz > S42/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S42/chr13.bam.pileup.gz > S42/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S42/chr14.bam.pileup.gz > S42/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S42/chr15.bam.pileup.gz > S42/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S42/chr16.bam.pileup.gz > S42/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S42/chr17.bam.pileup.gz > S42/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S42/chr18.bam.pileup.gz > S42/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S42/chr19.bam.pileup.gz > S42/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S42/chr2.bam.pileup.gz > S42/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S42/chr20.bam.pileup.gz > S42/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S42/chr21.bam.pileup.gz > S42/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S42/chr22.bam.pileup.gz > S42/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S42/chr3.bam.pileup.gz > S42/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S42/chr4.bam.pileup.gz > S42/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S42/chr5.bam.pileup.gz > S42/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S42/chr6.bam.pileup.gz > S42/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S42/chr7.bam.pileup.gz > S42/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S42/chr8.bam.pileup.gz > S42/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S42/chr9.bam.pileup.gz > S42/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S42/chrX.bam.pileup.gz > S42/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S42/chrY.bam.pileup.gz > S42/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S43/chr1.bam.pileup.gz > S43/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S43/chr10.bam.pileup.gz > S43/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S43/chr11.bam.pileup.gz > S43/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S43/chr12.bam.pileup.gz > S43/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S43/chr13.bam.pileup.gz > S43/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S43/chr14.bam.pileup.gz > S43/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S43/chr15.bam.pileup.gz > S43/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S43/chr16.bam.pileup.gz > S43/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S43/chr17.bam.pileup.gz > S43/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S43/chr18.bam.pileup.gz > S43/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S43/chr19.bam.pileup.gz > S43/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S43/chr2.bam.pileup.gz > S43/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S43/chr20.bam.pileup.gz > S43/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S43/chr21.bam.pileup.gz > S43/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S43/chr22.bam.pileup.gz > S43/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S43/chr3.bam.pileup.gz > S43/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S43/chr4.bam.pileup.gz > S43/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S43/chr5.bam.pileup.gz > S43/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S43/chr6.bam.pileup.gz > S43/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S43/chr7.bam.pileup.gz > S43/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S43/chr8.bam.pileup.gz > S43/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S43/chr9.bam.pileup.gz > S43/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S43/chrX.bam.pileup.gz > S43/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S43/chrY.bam.pileup.gz > S43/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S44/chr1.bam.pileup.gz > S44/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S44/chr10.bam.pileup.gz > S44/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S44/chr11.bam.pileup.gz > S44/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S44/chr12.bam.pileup.gz > S44/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S44/chr13.bam.pileup.gz > S44/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S44/chr14.bam.pileup.gz > S44/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S44/chr15.bam.pileup.gz > S44/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S44/chr16.bam.pileup.gz > S44/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S44/chr17.bam.pileup.gz > S44/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S44/chr18.bam.pileup.gz > S44/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S44/chr19.bam.pileup.gz > S44/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S44/chr2.bam.pileup.gz > S44/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S44/chr20.bam.pileup.gz > S44/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S44/chr21.bam.pileup.gz > S44/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S44/chr22.bam.pileup.gz > S44/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S44/chr3.bam.pileup.gz > S44/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S44/chr4.bam.pileup.gz > S44/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S44/chr5.bam.pileup.gz > S44/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S44/chr6.bam.pileup.gz > S44/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S44/chr7.bam.pileup.gz > S44/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S44/chr8.bam.pileup.gz > S44/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S44/chr9.bam.pileup.gz > S44/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S44/chrX.bam.pileup.gz > S44/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S44/chrY.bam.pileup.gz > S44/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S45/chr1.bam.pileup.gz > S45/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S45/chr10.bam.pileup.gz > S45/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S45/chr11.bam.pileup.gz > S45/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S45/chr12.bam.pileup.gz > S45/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S45/chr13.bam.pileup.gz > S45/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S45/chr14.bam.pileup.gz > S45/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S45/chr15.bam.pileup.gz > S45/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S45/chr16.bam.pileup.gz > S45/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S45/chr17.bam.pileup.gz > S45/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S45/chr18.bam.pileup.gz > S45/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S45/chr19.bam.pileup.gz > S45/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S45/chr2.bam.pileup.gz > S45/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S45/chr20.bam.pileup.gz > S45/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S45/chr21.bam.pileup.gz > S45/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S45/chr22.bam.pileup.gz > S45/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S45/chr3.bam.pileup.gz > S45/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S45/chr4.bam.pileup.gz > S45/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S45/chr5.bam.pileup.gz > S45/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S45/chr6.bam.pileup.gz > S45/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S45/chr7.bam.pileup.gz > S45/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S45/chr8.bam.pileup.gz > S45/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S45/chr9.bam.pileup.gz > S45/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S45/chrX.bam.pileup.gz > S45/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S45/chrY.bam.pileup.gz > S45/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S46/chr1.bam.pileup.gz > S46/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S46/chr10.bam.pileup.gz > S46/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S46/chr11.bam.pileup.gz > S46/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S46/chr12.bam.pileup.gz > S46/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S46/chr13.bam.pileup.gz > S46/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S46/chr14.bam.pileup.gz > S46/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S46/chr15.bam.pileup.gz > S46/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S46/chr16.bam.pileup.gz > S46/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S46/chr17.bam.pileup.gz > S46/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S46/chr18.bam.pileup.gz > S46/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S46/chr19.bam.pileup.gz > S46/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S46/chr2.bam.pileup.gz > S46/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S46/chr20.bam.pileup.gz > S46/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S46/chr21.bam.pileup.gz > S46/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S46/chr22.bam.pileup.gz > S46/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S46/chr3.bam.pileup.gz > S46/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S46/chr4.bam.pileup.gz > S46/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S46/chr5.bam.pileup.gz > S46/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S46/chr6.bam.pileup.gz > S46/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S46/chr7.bam.pileup.gz > S46/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S46/chr8.bam.pileup.gz > S46/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S46/chr9.bam.pileup.gz > S46/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S46/chrX.bam.pileup.gz > S46/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S46/chrY.bam.pileup.gz > S46/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S47/chr1.bam.pileup.gz > S47/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S47/chr10.bam.pileup.gz > S47/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S47/chr11.bam.pileup.gz > S47/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S47/chr12.bam.pileup.gz > S47/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S47/chr13.bam.pileup.gz > S47/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S47/chr14.bam.pileup.gz > S47/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S47/chr15.bam.pileup.gz > S47/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S47/chr16.bam.pileup.gz > S47/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S47/chr17.bam.pileup.gz > S47/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S47/chr18.bam.pileup.gz > S47/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S47/chr19.bam.pileup.gz > S47/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S47/chr2.bam.pileup.gz > S47/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S47/chr20.bam.pileup.gz > S47/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S47/chr21.bam.pileup.gz > S47/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S47/chr22.bam.pileup.gz > S47/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S47/chr3.bam.pileup.gz > S47/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S47/chr4.bam.pileup.gz > S47/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S47/chr5.bam.pileup.gz > S47/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S47/chr6.bam.pileup.gz > S47/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S47/chr7.bam.pileup.gz > S47/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S47/chr8.bam.pileup.gz > S47/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S47/chr9.bam.pileup.gz > S47/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S47/chrX.bam.pileup.gz > S47/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S47/chrY.bam.pileup.gz > S47/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S48/chr1.bam.pileup.gz > S48/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S48/chr10.bam.pileup.gz > S48/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S48/chr11.bam.pileup.gz > S48/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S48/chr12.bam.pileup.gz > S48/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S48/chr13.bam.pileup.gz > S48/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S48/chr14.bam.pileup.gz > S48/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S48/chr15.bam.pileup.gz > S48/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S48/chr16.bam.pileup.gz > S48/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S48/chr17.bam.pileup.gz > S48/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S48/chr18.bam.pileup.gz > S48/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S48/chr19.bam.pileup.gz > S48/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S48/chr2.bam.pileup.gz > S48/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S48/chr20.bam.pileup.gz > S48/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S48/chr21.bam.pileup.gz > S48/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S48/chr22.bam.pileup.gz > S48/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S48/chr3.bam.pileup.gz > S48/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S48/chr4.bam.pileup.gz > S48/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S48/chr5.bam.pileup.gz > S48/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S48/chr6.bam.pileup.gz > S48/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S48/chr7.bam.pileup.gz > S48/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S48/chr8.bam.pileup.gz > S48/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S48/chr9.bam.pileup.gz > S48/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S48/chrX.bam.pileup.gz > S48/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S48/chrY.bam.pileup.gz > S48/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S49/chr1.bam.pileup.gz > S49/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S49/chr10.bam.pileup.gz > S49/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S49/chr11.bam.pileup.gz > S49/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S49/chr12.bam.pileup.gz > S49/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S49/chr13.bam.pileup.gz > S49/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S49/chr14.bam.pileup.gz > S49/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S49/chr15.bam.pileup.gz > S49/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S49/chr16.bam.pileup.gz > S49/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S49/chr17.bam.pileup.gz > S49/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S49/chr18.bam.pileup.gz > S49/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S49/chr19.bam.pileup.gz > S49/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S49/chr2.bam.pileup.gz > S49/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S49/chr20.bam.pileup.gz > S49/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S49/chr21.bam.pileup.gz > S49/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S49/chr22.bam.pileup.gz > S49/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S49/chr3.bam.pileup.gz > S49/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S49/chr4.bam.pileup.gz > S49/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S49/chr5.bam.pileup.gz > S49/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S49/chr6.bam.pileup.gz > S49/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S49/chr7.bam.pileup.gz > S49/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S49/chr8.bam.pileup.gz > S49/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S49/chr9.bam.pileup.gz > S49/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S49/chrX.bam.pileup.gz > S49/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S49/chrY.bam.pileup.gz > S49/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S50/chr1.bam.pileup.gz > S50/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S50/chr10.bam.pileup.gz > S50/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S50/chr11.bam.pileup.gz > S50/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S50/chr12.bam.pileup.gz > S50/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S50/chr13.bam.pileup.gz > S50/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S50/chr14.bam.pileup.gz > S50/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S50/chr15.bam.pileup.gz > S50/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S50/chr16.bam.pileup.gz > S50/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S50/chr17.bam.pileup.gz > S50/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S50/chr18.bam.pileup.gz > S50/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S50/chr19.bam.pileup.gz > S50/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S50/chr2.bam.pileup.gz > S50/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S50/chr20.bam.pileup.gz > S50/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S50/chr21.bam.pileup.gz > S50/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S50/chr22.bam.pileup.gz > S50/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S50/chr3.bam.pileup.gz > S50/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S50/chr4.bam.pileup.gz > S50/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S50/chr5.bam.pileup.gz > S50/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S50/chr6.bam.pileup.gz > S50/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S50/chr7.bam.pileup.gz > S50/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S50/chr8.bam.pileup.gz > S50/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S50/chr9.bam.pileup.gz > S50/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S50/chrX.bam.pileup.gz > S50/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S50/chrY.bam.pileup.gz > S50/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S51/chr1.bam.pileup.gz > S51/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S51/chr10.bam.pileup.gz > S51/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S51/chr11.bam.pileup.gz > S51/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S51/chr12.bam.pileup.gz > S51/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S51/chr13.bam.pileup.gz > S51/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S51/chr14.bam.pileup.gz > S51/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S51/chr15.bam.pileup.gz > S51/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S51/chr16.bam.pileup.gz > S51/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S51/chr17.bam.pileup.gz > S51/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S51/chr18.bam.pileup.gz > S51/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S51/chr19.bam.pileup.gz > S51/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S51/chr2.bam.pileup.gz > S51/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S51/chr20.bam.pileup.gz > S51/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S51/chr21.bam.pileup.gz > S51/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S51/chr22.bam.pileup.gz > S51/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S51/chr3.bam.pileup.gz > S51/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S51/chr4.bam.pileup.gz > S51/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S51/chr5.bam.pileup.gz > S51/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S51/chr6.bam.pileup.gz > S51/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S51/chr7.bam.pileup.gz > S51/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S51/chr8.bam.pileup.gz > S51/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S51/chr9.bam.pileup.gz > S51/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S51/chrX.bam.pileup.gz > S51/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S51/chrY.bam.pileup.gz > S51/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S52/chr1.bam.pileup.gz > S52/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S52/chr10.bam.pileup.gz > S52/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S52/chr11.bam.pileup.gz > S52/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S52/chr12.bam.pileup.gz > S52/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S52/chr13.bam.pileup.gz > S52/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S52/chr14.bam.pileup.gz > S52/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S52/chr15.bam.pileup.gz > S52/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S52/chr16.bam.pileup.gz > S52/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S52/chr17.bam.pileup.gz > S52/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S52/chr18.bam.pileup.gz > S52/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S52/chr19.bam.pileup.gz > S52/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S52/chr2.bam.pileup.gz > S52/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S52/chr20.bam.pileup.gz > S52/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S52/chr21.bam.pileup.gz > S52/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S52/chr22.bam.pileup.gz > S52/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S52/chr3.bam.pileup.gz > S52/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S52/chr4.bam.pileup.gz > S52/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S52/chr5.bam.pileup.gz > S52/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S52/chr6.bam.pileup.gz > S52/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S52/chr7.bam.pileup.gz > S52/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S52/chr8.bam.pileup.gz > S52/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S52/chr9.bam.pileup.gz > S52/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S52/chrX.bam.pileup.gz > S52/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S52/chrY.bam.pileup.gz > S52/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S53/chr1.bam.pileup.gz > S53/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S53/chr10.bam.pileup.gz > S53/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S53/chr11.bam.pileup.gz > S53/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S53/chr12.bam.pileup.gz > S53/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S53/chr13.bam.pileup.gz > S53/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S53/chr14.bam.pileup.gz > S53/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S53/chr15.bam.pileup.gz > S53/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S53/chr16.bam.pileup.gz > S53/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S53/chr17.bam.pileup.gz > S53/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S53/chr18.bam.pileup.gz > S53/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S53/chr19.bam.pileup.gz > S53/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S53/chr2.bam.pileup.gz > S53/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S53/chr20.bam.pileup.gz > S53/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S53/chr21.bam.pileup.gz > S53/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S53/chr22.bam.pileup.gz > S53/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S53/chr3.bam.pileup.gz > S53/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S53/chr4.bam.pileup.gz > S53/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S53/chr5.bam.pileup.gz > S53/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S53/chr6.bam.pileup.gz > S53/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S53/chr7.bam.pileup.gz > S53/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S53/chr8.bam.pileup.gz > S53/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S53/chr9.bam.pileup.gz > S53/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S53/chrX.bam.pileup.gz > S53/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S53/chrY.bam.pileup.gz > S53/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S54/chr1.bam.pileup.gz > S54/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S54/chr10.bam.pileup.gz > S54/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S54/chr11.bam.pileup.gz > S54/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S54/chr12.bam.pileup.gz > S54/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S54/chr13.bam.pileup.gz > S54/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S54/chr14.bam.pileup.gz > S54/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S54/chr15.bam.pileup.gz > S54/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S54/chr16.bam.pileup.gz > S54/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S54/chr17.bam.pileup.gz > S54/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S54/chr18.bam.pileup.gz > S54/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S54/chr19.bam.pileup.gz > S54/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S54/chr2.bam.pileup.gz > S54/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S54/chr20.bam.pileup.gz > S54/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S54/chr21.bam.pileup.gz > S54/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S54/chr22.bam.pileup.gz > S54/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S54/chr3.bam.pileup.gz > S54/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S54/chr4.bam.pileup.gz > S54/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S54/chr5.bam.pileup.gz > S54/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S54/chr6.bam.pileup.gz > S54/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S54/chr7.bam.pileup.gz > S54/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S54/chr8.bam.pileup.gz > S54/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S54/chr9.bam.pileup.gz > S54/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S54/chrX.bam.pileup.gz > S54/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S54/chrY.bam.pileup.gz > S54/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S55/chr1.bam.pileup.gz > S55/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S55/chr10.bam.pileup.gz > S55/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S55/chr11.bam.pileup.gz > S55/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S55/chr12.bam.pileup.gz > S55/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S55/chr13.bam.pileup.gz > S55/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S55/chr14.bam.pileup.gz > S55/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S55/chr15.bam.pileup.gz > S55/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S55/chr16.bam.pileup.gz > S55/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S55/chr17.bam.pileup.gz > S55/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S55/chr18.bam.pileup.gz > S55/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S55/chr19.bam.pileup.gz > S55/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S55/chr2.bam.pileup.gz > S55/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S55/chr20.bam.pileup.gz > S55/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S55/chr21.bam.pileup.gz > S55/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S55/chr22.bam.pileup.gz > S55/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S55/chr3.bam.pileup.gz > S55/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S55/chr4.bam.pileup.gz > S55/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S55/chr5.bam.pileup.gz > S55/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S55/chr6.bam.pileup.gz > S55/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S55/chr7.bam.pileup.gz > S55/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S55/chr8.bam.pileup.gz > S55/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S55/chr9.bam.pileup.gz > S55/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S55/chrX.bam.pileup.gz > S55/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S55/chrY.bam.pileup.gz > S55/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S56/chr1.bam.pileup.gz > S56/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S56/chr10.bam.pileup.gz > S56/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S56/chr11.bam.pileup.gz > S56/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S56/chr12.bam.pileup.gz > S56/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S56/chr13.bam.pileup.gz > S56/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S56/chr14.bam.pileup.gz > S56/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S56/chr15.bam.pileup.gz > S56/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S56/chr16.bam.pileup.gz > S56/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S56/chr17.bam.pileup.gz > S56/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S56/chr18.bam.pileup.gz > S56/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S56/chr19.bam.pileup.gz > S56/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S56/chr2.bam.pileup.gz > S56/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S56/chr20.bam.pileup.gz > S56/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S56/chr21.bam.pileup.gz > S56/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S56/chr22.bam.pileup.gz > S56/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S56/chr3.bam.pileup.gz > S56/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S56/chr4.bam.pileup.gz > S56/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S56/chr5.bam.pileup.gz > S56/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S56/chr6.bam.pileup.gz > S56/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S56/chr7.bam.pileup.gz > S56/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S56/chr8.bam.pileup.gz > S56/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S56/chr9.bam.pileup.gz > S56/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S56/chrX.bam.pileup.gz > S56/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S56/chrY.bam.pileup.gz > S56/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S57/chr1.bam.pileup.gz > S57/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S57/chr10.bam.pileup.gz > S57/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S57/chr11.bam.pileup.gz > S57/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S57/chr12.bam.pileup.gz > S57/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S57/chr13.bam.pileup.gz > S57/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S57/chr14.bam.pileup.gz > S57/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S57/chr15.bam.pileup.gz > S57/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S57/chr16.bam.pileup.gz > S57/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S57/chr17.bam.pileup.gz > S57/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S57/chr18.bam.pileup.gz > S57/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S57/chr19.bam.pileup.gz > S57/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S57/chr2.bam.pileup.gz > S57/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S57/chr20.bam.pileup.gz > S57/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S57/chr21.bam.pileup.gz > S57/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S57/chr22.bam.pileup.gz > S57/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S57/chr3.bam.pileup.gz > S57/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S57/chr4.bam.pileup.gz > S57/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S57/chr5.bam.pileup.gz > S57/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S57/chr6.bam.pileup.gz > S57/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S57/chr7.bam.pileup.gz > S57/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S57/chr8.bam.pileup.gz > S57/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S57/chr9.bam.pileup.gz > S57/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S57/chrX.bam.pileup.gz > S57/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S57/chrY.bam.pileup.gz > S57/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S58/chr1.bam.pileup.gz > S58/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S58/chr10.bam.pileup.gz > S58/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S58/chr11.bam.pileup.gz > S58/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S58/chr12.bam.pileup.gz > S58/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S58/chr13.bam.pileup.gz > S58/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S58/chr14.bam.pileup.gz > S58/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S58/chr15.bam.pileup.gz > S58/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S58/chr16.bam.pileup.gz > S58/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S58/chr17.bam.pileup.gz > S58/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S58/chr18.bam.pileup.gz > S58/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S58/chr19.bam.pileup.gz > S58/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S58/chr2.bam.pileup.gz > S58/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S58/chr20.bam.pileup.gz > S58/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S58/chr21.bam.pileup.gz > S58/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S58/chr22.bam.pileup.gz > S58/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S58/chr3.bam.pileup.gz > S58/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S58/chr4.bam.pileup.gz > S58/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S58/chr5.bam.pileup.gz > S58/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S58/chr6.bam.pileup.gz > S58/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S58/chr7.bam.pileup.gz > S58/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S58/chr8.bam.pileup.gz > S58/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S58/chr9.bam.pileup.gz > S58/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S58/chrX.bam.pileup.gz > S58/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S58/chrY.bam.pileup.gz > S58/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S59/chr1.bam.pileup.gz > S59/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S59/chr10.bam.pileup.gz > S59/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S59/chr11.bam.pileup.gz > S59/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S59/chr12.bam.pileup.gz > S59/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S59/chr13.bam.pileup.gz > S59/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S59/chr14.bam.pileup.gz > S59/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S59/chr15.bam.pileup.gz > S59/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S59/chr16.bam.pileup.gz > S59/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S59/chr17.bam.pileup.gz > S59/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S59/chr18.bam.pileup.gz > S59/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S59/chr19.bam.pileup.gz > S59/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S59/chr2.bam.pileup.gz > S59/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S59/chr20.bam.pileup.gz > S59/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S59/chr21.bam.pileup.gz > S59/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S59/chr22.bam.pileup.gz > S59/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S59/chr3.bam.pileup.gz > S59/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S59/chr4.bam.pileup.gz > S59/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S59/chr5.bam.pileup.gz > S59/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S59/chr6.bam.pileup.gz > S59/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S59/chr7.bam.pileup.gz > S59/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S59/chr8.bam.pileup.gz > S59/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S59/chr9.bam.pileup.gz > S59/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S59/chrX.bam.pileup.gz > S59/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S59/chrY.bam.pileup.gz > S59/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S60/chr1.bam.pileup.gz > S60/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S60/chr10.bam.pileup.gz > S60/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S60/chr11.bam.pileup.gz > S60/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S60/chr12.bam.pileup.gz > S60/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S60/chr13.bam.pileup.gz > S60/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S60/chr14.bam.pileup.gz > S60/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S60/chr15.bam.pileup.gz > S60/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S60/chr16.bam.pileup.gz > S60/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S60/chr17.bam.pileup.gz > S60/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S60/chr18.bam.pileup.gz > S60/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S60/chr19.bam.pileup.gz > S60/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S60/chr2.bam.pileup.gz > S60/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S60/chr20.bam.pileup.gz > S60/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S60/chr21.bam.pileup.gz > S60/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S60/chr22.bam.pileup.gz > S60/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S60/chr3.bam.pileup.gz > S60/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S60/chr4.bam.pileup.gz > S60/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S60/chr5.bam.pileup.gz > S60/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S60/chr6.bam.pileup.gz > S60/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S60/chr7.bam.pileup.gz > S60/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S60/chr8.bam.pileup.gz > S60/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S60/chr9.bam.pileup.gz > S60/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S60/chrX.bam.pileup.gz > S60/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S60/chrY.bam.pileup.gz > S60/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S61/chr1.bam.pileup.gz > S61/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S61/chr10.bam.pileup.gz > S61/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S61/chr11.bam.pileup.gz > S61/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S61/chr12.bam.pileup.gz > S61/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S61/chr13.bam.pileup.gz > S61/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S61/chr14.bam.pileup.gz > S61/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S61/chr15.bam.pileup.gz > S61/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S61/chr16.bam.pileup.gz > S61/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S61/chr17.bam.pileup.gz > S61/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S61/chr18.bam.pileup.gz > S61/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S61/chr19.bam.pileup.gz > S61/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S61/chr2.bam.pileup.gz > S61/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S61/chr20.bam.pileup.gz > S61/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S61/chr21.bam.pileup.gz > S61/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S61/chr22.bam.pileup.gz > S61/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S61/chr3.bam.pileup.gz > S61/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S61/chr4.bam.pileup.gz > S61/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S61/chr5.bam.pileup.gz > S61/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S61/chr6.bam.pileup.gz > S61/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S61/chr7.bam.pileup.gz > S61/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S61/chr8.bam.pileup.gz > S61/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S61/chr9.bam.pileup.gz > S61/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S61/chrX.bam.pileup.gz > S61/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S61/chrY.bam.pileup.gz > S61/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S62/chr1.bam.pileup.gz > S62/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S62/chr10.bam.pileup.gz > S62/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S62/chr11.bam.pileup.gz > S62/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S62/chr12.bam.pileup.gz > S62/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S62/chr13.bam.pileup.gz > S62/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S62/chr14.bam.pileup.gz > S62/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S62/chr15.bam.pileup.gz > S62/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S62/chr16.bam.pileup.gz > S62/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S62/chr17.bam.pileup.gz > S62/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S62/chr18.bam.pileup.gz > S62/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S62/chr19.bam.pileup.gz > S62/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S62/chr2.bam.pileup.gz > S62/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S62/chr20.bam.pileup.gz > S62/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S62/chr21.bam.pileup.gz > S62/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S62/chr22.bam.pileup.gz > S62/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S62/chr3.bam.pileup.gz > S62/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S62/chr4.bam.pileup.gz > S62/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S62/chr5.bam.pileup.gz > S62/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S62/chr6.bam.pileup.gz > S62/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S62/chr7.bam.pileup.gz > S62/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S62/chr8.bam.pileup.gz > S62/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S62/chr9.bam.pileup.gz > S62/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S62/chrX.bam.pileup.gz > S62/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S62/chrY.bam.pileup.gz > S62/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S63/chr1.bam.pileup.gz > S63/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S63/chr10.bam.pileup.gz > S63/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S63/chr11.bam.pileup.gz > S63/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S63/chr12.bam.pileup.gz > S63/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S63/chr13.bam.pileup.gz > S63/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S63/chr14.bam.pileup.gz > S63/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S63/chr15.bam.pileup.gz > S63/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S63/chr16.bam.pileup.gz > S63/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S63/chr17.bam.pileup.gz > S63/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S63/chr18.bam.pileup.gz > S63/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S63/chr19.bam.pileup.gz > S63/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S63/chr2.bam.pileup.gz > S63/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S63/chr20.bam.pileup.gz > S63/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S63/chr21.bam.pileup.gz > S63/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S63/chr22.bam.pileup.gz > S63/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S63/chr3.bam.pileup.gz > S63/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S63/chr4.bam.pileup.gz > S63/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S63/chr5.bam.pileup.gz > S63/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S63/chr6.bam.pileup.gz > S63/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S63/chr7.bam.pileup.gz > S63/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S63/chr8.bam.pileup.gz > S63/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S63/chr9.bam.pileup.gz > S63/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S63/chrX.bam.pileup.gz > S63/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S63/chrY.bam.pileup.gz > S63/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S64/chr1.bam.pileup.gz > S64/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S64/chr10.bam.pileup.gz > S64/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S64/chr11.bam.pileup.gz > S64/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S64/chr12.bam.pileup.gz > S64/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S64/chr13.bam.pileup.gz > S64/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S64/chr14.bam.pileup.gz > S64/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S64/chr15.bam.pileup.gz > S64/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S64/chr16.bam.pileup.gz > S64/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S64/chr17.bam.pileup.gz > S64/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S64/chr18.bam.pileup.gz > S64/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S64/chr19.bam.pileup.gz > S64/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S64/chr2.bam.pileup.gz > S64/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S64/chr20.bam.pileup.gz > S64/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S64/chr21.bam.pileup.gz > S64/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S64/chr22.bam.pileup.gz > S64/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S64/chr3.bam.pileup.gz > S64/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S64/chr4.bam.pileup.gz > S64/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S64/chr5.bam.pileup.gz > S64/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S64/chr6.bam.pileup.gz > S64/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S64/chr7.bam.pileup.gz > S64/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S64/chr8.bam.pileup.gz > S64/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S64/chr9.bam.pileup.gz > S64/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S64/chrX.bam.pileup.gz > S64/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S64/chrY.bam.pileup.gz > S64/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S65/chr1.bam.pileup.gz > S65/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S65/chr10.bam.pileup.gz > S65/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S65/chr11.bam.pileup.gz > S65/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S65/chr12.bam.pileup.gz > S65/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S65/chr13.bam.pileup.gz > S65/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S65/chr14.bam.pileup.gz > S65/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S65/chr15.bam.pileup.gz > S65/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S65/chr16.bam.pileup.gz > S65/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S65/chr17.bam.pileup.gz > S65/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S65/chr18.bam.pileup.gz > S65/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S65/chr19.bam.pileup.gz > S65/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S65/chr2.bam.pileup.gz > S65/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S65/chr20.bam.pileup.gz > S65/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S65/chr21.bam.pileup.gz > S65/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S65/chr22.bam.pileup.gz > S65/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S65/chr3.bam.pileup.gz > S65/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S65/chr4.bam.pileup.gz > S65/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S65/chr5.bam.pileup.gz > S65/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S65/chr6.bam.pileup.gz > S65/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S65/chr7.bam.pileup.gz > S65/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S65/chr8.bam.pileup.gz > S65/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S65/chr9.bam.pileup.gz > S65/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S65/chrX.bam.pileup.gz > S65/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S65/chrY.bam.pileup.gz > S65/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S66/chr1.bam.pileup.gz > S66/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S66/chr10.bam.pileup.gz > S66/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S66/chr11.bam.pileup.gz > S66/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S66/chr12.bam.pileup.gz > S66/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S66/chr13.bam.pileup.gz > S66/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S66/chr14.bam.pileup.gz > S66/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S66/chr15.bam.pileup.gz > S66/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S66/chr16.bam.pileup.gz > S66/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S66/chr17.bam.pileup.gz > S66/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S66/chr18.bam.pileup.gz > S66/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S66/chr19.bam.pileup.gz > S66/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S66/chr2.bam.pileup.gz > S66/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S66/chr20.bam.pileup.gz > S66/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S66/chr21.bam.pileup.gz > S66/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S66/chr22.bam.pileup.gz > S66/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S66/chr3.bam.pileup.gz > S66/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S66/chr4.bam.pileup.gz > S66/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S66/chr5.bam.pileup.gz > S66/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S66/chr6.bam.pileup.gz > S66/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S66/chr7.bam.pileup.gz > S66/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S66/chr8.bam.pileup.gz > S66/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S66/chr9.bam.pileup.gz > S66/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S66/chrX.bam.pileup.gz > S66/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S66/chrY.bam.pileup.gz > S66/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S67/chr1.bam.pileup.gz > S67/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S67/chr10.bam.pileup.gz > S67/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S67/chr11.bam.pileup.gz > S67/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S67/chr12.bam.pileup.gz > S67/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S67/chr13.bam.pileup.gz > S67/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S67/chr14.bam.pileup.gz > S67/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S67/chr15.bam.pileup.gz > S67/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S67/chr16.bam.pileup.gz > S67/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S67/chr17.bam.pileup.gz > S67/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S67/chr18.bam.pileup.gz > S67/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S67/chr19.bam.pileup.gz > S67/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S67/chr2.bam.pileup.gz > S67/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S67/chr20.bam.pileup.gz > S67/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S67/chr21.bam.pileup.gz > S67/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S67/chr22.bam.pileup.gz > S67/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S67/chr3.bam.pileup.gz > S67/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S67/chr4.bam.pileup.gz > S67/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S67/chr5.bam.pileup.gz > S67/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S67/chr6.bam.pileup.gz > S67/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S67/chr7.bam.pileup.gz > S67/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S67/chr8.bam.pileup.gz > S67/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S67/chr9.bam.pileup.gz > S67/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S67/chrX.bam.pileup.gz > S67/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S67/chrY.bam.pileup.gz > S67/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S68/chr1.bam.pileup.gz > S68/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S68/chr10.bam.pileup.gz > S68/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S68/chr11.bam.pileup.gz > S68/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S68/chr12.bam.pileup.gz > S68/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S68/chr13.bam.pileup.gz > S68/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S68/chr14.bam.pileup.gz > S68/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S68/chr15.bam.pileup.gz > S68/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S68/chr16.bam.pileup.gz > S68/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S68/chr17.bam.pileup.gz > S68/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S68/chr18.bam.pileup.gz > S68/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S68/chr19.bam.pileup.gz > S68/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S68/chr2.bam.pileup.gz > S68/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S68/chr20.bam.pileup.gz > S68/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S68/chr21.bam.pileup.gz > S68/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S68/chr22.bam.pileup.gz > S68/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S68/chr3.bam.pileup.gz > S68/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S68/chr4.bam.pileup.gz > S68/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S68/chr5.bam.pileup.gz > S68/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S68/chr6.bam.pileup.gz > S68/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S68/chr7.bam.pileup.gz > S68/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S68/chr8.bam.pileup.gz > S68/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S68/chr9.bam.pileup.gz > S68/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S68/chrX.bam.pileup.gz > S68/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S68/chrY.bam.pileup.gz > S68/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S69/chr1.bam.pileup.gz > S69/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S69/chr10.bam.pileup.gz > S69/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S69/chr11.bam.pileup.gz > S69/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S69/chr12.bam.pileup.gz > S69/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S69/chr13.bam.pileup.gz > S69/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S69/chr14.bam.pileup.gz > S69/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S69/chr15.bam.pileup.gz > S69/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S69/chr16.bam.pileup.gz > S69/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S69/chr17.bam.pileup.gz > S69/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S69/chr18.bam.pileup.gz > S69/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S69/chr19.bam.pileup.gz > S69/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S69/chr2.bam.pileup.gz > S69/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S69/chr20.bam.pileup.gz > S69/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S69/chr21.bam.pileup.gz > S69/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S69/chr22.bam.pileup.gz > S69/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S69/chr3.bam.pileup.gz > S69/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S69/chr4.bam.pileup.gz > S69/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S69/chr5.bam.pileup.gz > S69/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S69/chr6.bam.pileup.gz > S69/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S69/chr7.bam.pileup.gz > S69/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S69/chr8.bam.pileup.gz > S69/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S69/chr9.bam.pileup.gz > S69/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S69/chrX.bam.pileup.gz > S69/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S69/chrY.bam.pileup.gz > S69/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S70/chr1.bam.pileup.gz > S70/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S70/chr10.bam.pileup.gz > S70/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S70/chr11.bam.pileup.gz > S70/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S70/chr12.bam.pileup.gz > S70/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S70/chr13.bam.pileup.gz > S70/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S70/chr14.bam.pileup.gz > S70/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S70/chr15.bam.pileup.gz > S70/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S70/chr16.bam.pileup.gz > S70/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S70/chr17.bam.pileup.gz > S70/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S70/chr18.bam.pileup.gz > S70/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S70/chr19.bam.pileup.gz > S70/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S70/chr2.bam.pileup.gz > S70/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S70/chr20.bam.pileup.gz > S70/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S70/chr21.bam.pileup.gz > S70/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S70/chr22.bam.pileup.gz > S70/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S70/chr3.bam.pileup.gz > S70/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S70/chr4.bam.pileup.gz > S70/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S70/chr5.bam.pileup.gz > S70/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S70/chr6.bam.pileup.gz > S70/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S70/chr7.bam.pileup.gz > S70/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S70/chr8.bam.pileup.gz > S70/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S70/chr9.bam.pileup.gz > S70/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S70/chrX.bam.pileup.gz > S70/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S70/chrY.bam.pileup.gz > S70/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S71/chr1.bam.pileup.gz > S71/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S71/chr10.bam.pileup.gz > S71/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S71/chr11.bam.pileup.gz > S71/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S71/chr12.bam.pileup.gz > S71/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S71/chr13.bam.pileup.gz > S71/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S71/chr14.bam.pileup.gz > S71/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S71/chr15.bam.pileup.gz > S71/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S71/chr16.bam.pileup.gz > S71/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S71/chr17.bam.pileup.gz > S71/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S71/chr18.bam.pileup.gz > S71/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S71/chr19.bam.pileup.gz > S71/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S71/chr2.bam.pileup.gz > S71/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S71/chr20.bam.pileup.gz > S71/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S71/chr21.bam.pileup.gz > S71/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S71/chr22.bam.pileup.gz > S71/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S71/chr3.bam.pileup.gz > S71/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S71/chr4.bam.pileup.gz > S71/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S71/chr5.bam.pileup.gz > S71/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S71/chr6.bam.pileup.gz > S71/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S71/chr7.bam.pileup.gz > S71/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S71/chr8.bam.pileup.gz > S71/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S71/chr9.bam.pileup.gz > S71/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S71/chrX.bam.pileup.gz > S71/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S71/chrY.bam.pileup.gz > S71/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S72/chr1.bam.pileup.gz > S72/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S72/chr10.bam.pileup.gz > S72/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S72/chr11.bam.pileup.gz > S72/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S72/chr12.bam.pileup.gz > S72/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S72/chr13.bam.pileup.gz > S72/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S72/chr14.bam.pileup.gz > S72/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S72/chr15.bam.pileup.gz > S72/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S72/chr16.bam.pileup.gz > S72/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S72/chr17.bam.pileup.gz > S72/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S72/chr18.bam.pileup.gz > S72/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S72/chr19.bam.pileup.gz > S72/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S72/chr2.bam.pileup.gz > S72/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S72/chr20.bam.pileup.gz > S72/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S72/chr21.bam.pileup.gz > S72/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S72/chr22.bam.pileup.gz > S72/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S72/chr3.bam.pileup.gz > S72/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S72/chr4.bam.pileup.gz > S72/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S72/chr5.bam.pileup.gz > S72/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S72/chr6.bam.pileup.gz > S72/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S72/chr7.bam.pileup.gz > S72/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S72/chr8.bam.pileup.gz > S72/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S72/chr9.bam.pileup.gz > S72/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S72/chrX.bam.pileup.gz > S72/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S72/chrY.bam.pileup.gz > S72/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S73/chr1.bam.pileup.gz > S73/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S73/chr10.bam.pileup.gz > S73/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S73/chr11.bam.pileup.gz > S73/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S73/chr12.bam.pileup.gz > S73/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S73/chr13.bam.pileup.gz > S73/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S73/chr14.bam.pileup.gz > S73/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S73/chr15.bam.pileup.gz > S73/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S73/chr16.bam.pileup.gz > S73/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S73/chr17.bam.pileup.gz > S73/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S73/chr18.bam.pileup.gz > S73/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S73/chr19.bam.pileup.gz > S73/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S73/chr2.bam.pileup.gz > S73/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S73/chr20.bam.pileup.gz > S73/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S73/chr21.bam.pileup.gz > S73/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S73/chr22.bam.pileup.gz > S73/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S73/chr3.bam.pileup.gz > S73/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S73/chr4.bam.pileup.gz > S73/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S73/chr5.bam.pileup.gz > S73/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S73/chr6.bam.pileup.gz > S73/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S73/chr7.bam.pileup.gz > S73/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S73/chr8.bam.pileup.gz > S73/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S73/chr9.bam.pileup.gz > S73/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S73/chrX.bam.pileup.gz > S73/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S73/chrY.bam.pileup.gz > S73/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S74/chr1.bam.pileup.gz > S74/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S74/chr10.bam.pileup.gz > S74/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S74/chr11.bam.pileup.gz > S74/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S74/chr12.bam.pileup.gz > S74/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S74/chr13.bam.pileup.gz > S74/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S74/chr14.bam.pileup.gz > S74/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S74/chr15.bam.pileup.gz > S74/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S74/chr16.bam.pileup.gz > S74/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S74/chr17.bam.pileup.gz > S74/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S74/chr18.bam.pileup.gz > S74/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S74/chr19.bam.pileup.gz > S74/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S74/chr2.bam.pileup.gz > S74/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S74/chr20.bam.pileup.gz > S74/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S74/chr21.bam.pileup.gz > S74/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S74/chr22.bam.pileup.gz > S74/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S74/chr3.bam.pileup.gz > S74/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S74/chr4.bam.pileup.gz > S74/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S74/chr5.bam.pileup.gz > S74/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S74/chr6.bam.pileup.gz > S74/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S74/chr7.bam.pileup.gz > S74/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S74/chr8.bam.pileup.gz > S74/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S74/chr9.bam.pileup.gz > S74/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S74/chrX.bam.pileup.gz > S74/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S74/chrY.bam.pileup.gz > S74/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S75/chr1.bam.pileup.gz > S75/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S75/chr10.bam.pileup.gz > S75/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S75/chr11.bam.pileup.gz > S75/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S75/chr12.bam.pileup.gz > S75/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S75/chr13.bam.pileup.gz > S75/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S75/chr14.bam.pileup.gz > S75/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S75/chr15.bam.pileup.gz > S75/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S75/chr16.bam.pileup.gz > S75/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S75/chr17.bam.pileup.gz > S75/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S75/chr18.bam.pileup.gz > S75/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S75/chr19.bam.pileup.gz > S75/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S75/chr2.bam.pileup.gz > S75/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S75/chr20.bam.pileup.gz > S75/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S75/chr21.bam.pileup.gz > S75/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S75/chr22.bam.pileup.gz > S75/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S75/chr3.bam.pileup.gz > S75/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S75/chr4.bam.pileup.gz > S75/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S75/chr5.bam.pileup.gz > S75/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S75/chr6.bam.pileup.gz > S75/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S75/chr7.bam.pileup.gz > S75/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S75/chr8.bam.pileup.gz > S75/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S75/chr9.bam.pileup.gz > S75/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S75/chrX.bam.pileup.gz > S75/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S75/chrY.bam.pileup.gz > S75/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S76/chr1.bam.pileup.gz > S76/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S76/chr10.bam.pileup.gz > S76/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S76/chr11.bam.pileup.gz > S76/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S76/chr12.bam.pileup.gz > S76/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S76/chr13.bam.pileup.gz > S76/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S76/chr14.bam.pileup.gz > S76/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S76/chr15.bam.pileup.gz > S76/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S76/chr16.bam.pileup.gz > S76/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S76/chr17.bam.pileup.gz > S76/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S76/chr18.bam.pileup.gz > S76/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S76/chr19.bam.pileup.gz > S76/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S76/chr2.bam.pileup.gz > S76/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S76/chr20.bam.pileup.gz > S76/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S76/chr21.bam.pileup.gz > S76/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S76/chr22.bam.pileup.gz > S76/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S76/chr3.bam.pileup.gz > S76/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S76/chr4.bam.pileup.gz > S76/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S76/chr5.bam.pileup.gz > S76/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S76/chr6.bam.pileup.gz > S76/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S76/chr7.bam.pileup.gz > S76/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S76/chr8.bam.pileup.gz > S76/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S76/chr9.bam.pileup.gz > S76/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S76/chrX.bam.pileup.gz > S76/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S76/chrY.bam.pileup.gz > S76/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S77/chr1.bam.pileup.gz > S77/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S77/chr10.bam.pileup.gz > S77/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S77/chr11.bam.pileup.gz > S77/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S77/chr12.bam.pileup.gz > S77/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S77/chr13.bam.pileup.gz > S77/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S77/chr14.bam.pileup.gz > S77/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S77/chr15.bam.pileup.gz > S77/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S77/chr16.bam.pileup.gz > S77/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S77/chr17.bam.pileup.gz > S77/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S77/chr18.bam.pileup.gz > S77/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S77/chr19.bam.pileup.gz > S77/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S77/chr2.bam.pileup.gz > S77/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S77/chr20.bam.pileup.gz > S77/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S77/chr21.bam.pileup.gz > S77/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S77/chr22.bam.pileup.gz > S77/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S77/chr3.bam.pileup.gz > S77/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S77/chr4.bam.pileup.gz > S77/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S77/chr5.bam.pileup.gz > S77/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S77/chr6.bam.pileup.gz > S77/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S77/chr7.bam.pileup.gz > S77/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S77/chr8.bam.pileup.gz > S77/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S77/chr9.bam.pileup.gz > S77/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S77/chrX.bam.pileup.gz > S77/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S77/chrY.bam.pileup.gz > S77/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S78/chr1.bam.pileup.gz > S78/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S78/chr10.bam.pileup.gz > S78/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S78/chr11.bam.pileup.gz > S78/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S78/chr12.bam.pileup.gz > S78/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S78/chr13.bam.pileup.gz > S78/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S78/chr14.bam.pileup.gz > S78/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S78/chr15.bam.pileup.gz > S78/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S78/chr16.bam.pileup.gz > S78/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S78/chr17.bam.pileup.gz > S78/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S78/chr18.bam.pileup.gz > S78/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S78/chr19.bam.pileup.gz > S78/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S78/chr2.bam.pileup.gz > S78/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S78/chr20.bam.pileup.gz > S78/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S78/chr21.bam.pileup.gz > S78/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S78/chr22.bam.pileup.gz > S78/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S78/chr3.bam.pileup.gz > S78/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S78/chr4.bam.pileup.gz > S78/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S78/chr5.bam.pileup.gz > S78/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S78/chr6.bam.pileup.gz > S78/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S78/chr7.bam.pileup.gz > S78/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S78/chr8.bam.pileup.gz > S78/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S78/chr9.bam.pileup.gz > S78/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S78/chrX.bam.pileup.gz > S78/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S78/chrY.bam.pileup.gz > S78/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S79/chr1.bam.pileup.gz > S79/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S79/chr10.bam.pileup.gz > S79/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S79/chr11.bam.pileup.gz > S79/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S79/chr12.bam.pileup.gz > S79/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S79/chr13.bam.pileup.gz > S79/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S79/chr14.bam.pileup.gz > S79/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S79/chr15.bam.pileup.gz > S79/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S79/chr16.bam.pileup.gz > S79/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S79/chr17.bam.pileup.gz > S79/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S79/chr18.bam.pileup.gz > S79/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S79/chr19.bam.pileup.gz > S79/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S79/chr2.bam.pileup.gz > S79/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S79/chr20.bam.pileup.gz > S79/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S79/chr21.bam.pileup.gz > S79/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S79/chr22.bam.pileup.gz > S79/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S79/chr3.bam.pileup.gz > S79/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S79/chr4.bam.pileup.gz > S79/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S79/chr5.bam.pileup.gz > S79/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S79/chr6.bam.pileup.gz > S79/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S79/chr7.bam.pileup.gz > S79/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S79/chr8.bam.pileup.gz > S79/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S79/chr9.bam.pileup.gz > S79/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S79/chrX.bam.pileup.gz > S79/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S79/chrY.bam.pileup.gz > S79/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S80/chr1.bam.pileup.gz > S80/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S80/chr10.bam.pileup.gz > S80/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S80/chr11.bam.pileup.gz > S80/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S80/chr12.bam.pileup.gz > S80/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S80/chr13.bam.pileup.gz > S80/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S80/chr14.bam.pileup.gz > S80/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S80/chr15.bam.pileup.gz > S80/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S80/chr16.bam.pileup.gz > S80/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S80/chr17.bam.pileup.gz > S80/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S80/chr18.bam.pileup.gz > S80/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S80/chr19.bam.pileup.gz > S80/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S80/chr2.bam.pileup.gz > S80/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S80/chr20.bam.pileup.gz > S80/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S80/chr21.bam.pileup.gz > S80/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S80/chr22.bam.pileup.gz > S80/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S80/chr3.bam.pileup.gz > S80/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S80/chr4.bam.pileup.gz > S80/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S80/chr5.bam.pileup.gz > S80/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S80/chr6.bam.pileup.gz > S80/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S80/chr7.bam.pileup.gz > S80/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S80/chr8.bam.pileup.gz > S80/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S80/chr9.bam.pileup.gz > S80/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S80/chrX.bam.pileup.gz > S80/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S80/chrY.bam.pileup.gz > S80/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S81/chr1.bam.pileup.gz > S81/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S81/chr10.bam.pileup.gz > S81/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S81/chr11.bam.pileup.gz > S81/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S81/chr12.bam.pileup.gz > S81/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S81/chr13.bam.pileup.gz > S81/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S81/chr14.bam.pileup.gz > S81/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S81/chr15.bam.pileup.gz > S81/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S81/chr16.bam.pileup.gz > S81/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S81/chr17.bam.pileup.gz > S81/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S81/chr18.bam.pileup.gz > S81/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S81/chr19.bam.pileup.gz > S81/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S81/chr2.bam.pileup.gz > S81/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S81/chr20.bam.pileup.gz > S81/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S81/chr21.bam.pileup.gz > S81/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S81/chr22.bam.pileup.gz > S81/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S81/chr3.bam.pileup.gz > S81/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S81/chr4.bam.pileup.gz > S81/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S81/chr5.bam.pileup.gz > S81/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S81/chr6.bam.pileup.gz > S81/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S81/chr7.bam.pileup.gz > S81/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S81/chr8.bam.pileup.gz > S81/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S81/chr9.bam.pileup.gz > S81/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S81/chrX.bam.pileup.gz > S81/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S81/chrY.bam.pileup.gz > S81/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S82/chr1.bam.pileup.gz > S82/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S82/chr10.bam.pileup.gz > S82/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S82/chr11.bam.pileup.gz > S82/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S82/chr12.bam.pileup.gz > S82/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S82/chr13.bam.pileup.gz > S82/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S82/chr14.bam.pileup.gz > S82/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S82/chr15.bam.pileup.gz > S82/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S82/chr16.bam.pileup.gz > S82/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S82/chr17.bam.pileup.gz > S82/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S82/chr18.bam.pileup.gz > S82/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S82/chr19.bam.pileup.gz > S82/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S82/chr2.bam.pileup.gz > S82/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S82/chr20.bam.pileup.gz > S82/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S82/chr21.bam.pileup.gz > S82/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S82/chr22.bam.pileup.gz > S82/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S82/chr3.bam.pileup.gz > S82/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S82/chr4.bam.pileup.gz > S82/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S82/chr5.bam.pileup.gz > S82/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S82/chr6.bam.pileup.gz > S82/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S82/chr7.bam.pileup.gz > S82/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S82/chr8.bam.pileup.gz > S82/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S82/chr9.bam.pileup.gz > S82/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S82/chrX.bam.pileup.gz > S82/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S82/chrY.bam.pileup.gz > S82/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S83/chr1.bam.pileup.gz > S83/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S83/chr10.bam.pileup.gz > S83/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S83/chr11.bam.pileup.gz > S83/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S83/chr12.bam.pileup.gz > S83/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S83/chr13.bam.pileup.gz > S83/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S83/chr14.bam.pileup.gz > S83/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S83/chr15.bam.pileup.gz > S83/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S83/chr16.bam.pileup.gz > S83/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S83/chr17.bam.pileup.gz > S83/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S83/chr18.bam.pileup.gz > S83/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S83/chr19.bam.pileup.gz > S83/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S83/chr2.bam.pileup.gz > S83/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S83/chr20.bam.pileup.gz > S83/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S83/chr21.bam.pileup.gz > S83/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S83/chr22.bam.pileup.gz > S83/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S83/chr3.bam.pileup.gz > S83/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S83/chr4.bam.pileup.gz > S83/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S83/chr5.bam.pileup.gz > S83/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S83/chr6.bam.pileup.gz > S83/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S83/chr7.bam.pileup.gz > S83/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S83/chr8.bam.pileup.gz > S83/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S83/chr9.bam.pileup.gz > S83/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S83/chrX.bam.pileup.gz > S83/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S83/chrY.bam.pileup.gz > S83/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S84/chr1.bam.pileup.gz > S84/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S84/chr10.bam.pileup.gz > S84/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S84/chr11.bam.pileup.gz > S84/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S84/chr12.bam.pileup.gz > S84/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S84/chr13.bam.pileup.gz > S84/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S84/chr14.bam.pileup.gz > S84/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S84/chr15.bam.pileup.gz > S84/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S84/chr16.bam.pileup.gz > S84/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S84/chr17.bam.pileup.gz > S84/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S84/chr18.bam.pileup.gz > S84/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S84/chr19.bam.pileup.gz > S84/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S84/chr2.bam.pileup.gz > S84/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S84/chr20.bam.pileup.gz > S84/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S84/chr21.bam.pileup.gz > S84/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S84/chr22.bam.pileup.gz > S84/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S84/chr3.bam.pileup.gz > S84/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S84/chr4.bam.pileup.gz > S84/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S84/chr5.bam.pileup.gz > S84/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S84/chr6.bam.pileup.gz > S84/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S84/chr7.bam.pileup.gz > S84/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S84/chr8.bam.pileup.gz > S84/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S84/chr9.bam.pileup.gz > S84/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S84/chrX.bam.pileup.gz > S84/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S84/chrY.bam.pileup.gz > S84/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S85/chr1.bam.pileup.gz > S85/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S85/chr10.bam.pileup.gz > S85/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S85/chr11.bam.pileup.gz > S85/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S85/chr12.bam.pileup.gz > S85/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S85/chr13.bam.pileup.gz > S85/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S85/chr14.bam.pileup.gz > S85/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S85/chr15.bam.pileup.gz > S85/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S85/chr16.bam.pileup.gz > S85/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S85/chr17.bam.pileup.gz > S85/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S85/chr18.bam.pileup.gz > S85/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S85/chr19.bam.pileup.gz > S85/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S85/chr2.bam.pileup.gz > S85/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S85/chr20.bam.pileup.gz > S85/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S85/chr21.bam.pileup.gz > S85/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S85/chr22.bam.pileup.gz > S85/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S85/chr3.bam.pileup.gz > S85/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S85/chr4.bam.pileup.gz > S85/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S85/chr5.bam.pileup.gz > S85/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S85/chr6.bam.pileup.gz > S85/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S85/chr7.bam.pileup.gz > S85/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S85/chr8.bam.pileup.gz > S85/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S85/chr9.bam.pileup.gz > S85/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S85/chrX.bam.pileup.gz > S85/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S85/chrY.bam.pileup.gz > S85/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S86/chr1.bam.pileup.gz > S86/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S86/chr10.bam.pileup.gz > S86/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S86/chr11.bam.pileup.gz > S86/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S86/chr12.bam.pileup.gz > S86/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S86/chr13.bam.pileup.gz > S86/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S86/chr14.bam.pileup.gz > S86/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S86/chr15.bam.pileup.gz > S86/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S86/chr16.bam.pileup.gz > S86/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S86/chr17.bam.pileup.gz > S86/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S86/chr18.bam.pileup.gz > S86/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S86/chr19.bam.pileup.gz > S86/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S86/chr2.bam.pileup.gz > S86/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S86/chr20.bam.pileup.gz > S86/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S86/chr21.bam.pileup.gz > S86/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S86/chr22.bam.pileup.gz > S86/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S86/chr3.bam.pileup.gz > S86/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S86/chr4.bam.pileup.gz > S86/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S86/chr5.bam.pileup.gz > S86/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S86/chr6.bam.pileup.gz > S86/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S86/chr7.bam.pileup.gz > S86/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S86/chr8.bam.pileup.gz > S86/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S86/chr9.bam.pileup.gz > S86/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S86/chrX.bam.pileup.gz > S86/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S86/chrY.bam.pileup.gz > S86/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S87/chr1.bam.pileup.gz > S87/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S87/chr10.bam.pileup.gz > S87/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S87/chr11.bam.pileup.gz > S87/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S87/chr12.bam.pileup.gz > S87/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S87/chr13.bam.pileup.gz > S87/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S87/chr14.bam.pileup.gz > S87/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S87/chr15.bam.pileup.gz > S87/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S87/chr16.bam.pileup.gz > S87/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S87/chr17.bam.pileup.gz > S87/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S87/chr18.bam.pileup.gz > S87/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S87/chr19.bam.pileup.gz > S87/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S87/chr2.bam.pileup.gz > S87/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S87/chr20.bam.pileup.gz > S87/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S87/chr21.bam.pileup.gz > S87/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S87/chr22.bam.pileup.gz > S87/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S87/chr3.bam.pileup.gz > S87/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S87/chr4.bam.pileup.gz > S87/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S87/chr5.bam.pileup.gz > S87/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S87/chr6.bam.pileup.gz > S87/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S87/chr7.bam.pileup.gz > S87/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S87/chr8.bam.pileup.gz > S87/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S87/chr9.bam.pileup.gz > S87/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S87/chrX.bam.pileup.gz > S87/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S87/chrY.bam.pileup.gz > S87/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S88/chr1.bam.pileup.gz > S88/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S88/chr10.bam.pileup.gz > S88/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S88/chr11.bam.pileup.gz > S88/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S88/chr12.bam.pileup.gz > S88/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S88/chr13.bam.pileup.gz > S88/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S88/chr14.bam.pileup.gz > S88/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S88/chr15.bam.pileup.gz > S88/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S88/chr16.bam.pileup.gz > S88/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S88/chr17.bam.pileup.gz > S88/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S88/chr18.bam.pileup.gz > S88/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S88/chr19.bam.pileup.gz > S88/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S88/chr2.bam.pileup.gz > S88/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S88/chr20.bam.pileup.gz > S88/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S88/chr21.bam.pileup.gz > S88/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S88/chr22.bam.pileup.gz > S88/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S88/chr3.bam.pileup.gz > S88/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S88/chr4.bam.pileup.gz > S88/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S88/chr5.bam.pileup.gz > S88/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S88/chr6.bam.pileup.gz > S88/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S88/chr7.bam.pileup.gz > S88/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S88/chr8.bam.pileup.gz > S88/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S88/chr9.bam.pileup.gz > S88/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S88/chrX.bam.pileup.gz > S88/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S88/chrY.bam.pileup.gz > S88/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S89/chr1.bam.pileup.gz > S89/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S89/chr10.bam.pileup.gz > S89/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S89/chr11.bam.pileup.gz > S89/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S89/chr12.bam.pileup.gz > S89/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S89/chr13.bam.pileup.gz > S89/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S89/chr14.bam.pileup.gz > S89/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S89/chr15.bam.pileup.gz > S89/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S89/chr16.bam.pileup.gz > S89/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S89/chr17.bam.pileup.gz > S89/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S89/chr18.bam.pileup.gz > S89/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S89/chr19.bam.pileup.gz > S89/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S89/chr2.bam.pileup.gz > S89/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S89/chr20.bam.pileup.gz > S89/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S89/chr21.bam.pileup.gz > S89/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S89/chr22.bam.pileup.gz > S89/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S89/chr3.bam.pileup.gz > S89/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S89/chr4.bam.pileup.gz > S89/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S89/chr5.bam.pileup.gz > S89/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S89/chr6.bam.pileup.gz > S89/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S89/chr7.bam.pileup.gz > S89/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S89/chr8.bam.pileup.gz > S89/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S89/chr9.bam.pileup.gz > S89/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S89/chrX.bam.pileup.gz > S89/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S89/chrY.bam.pileup.gz > S89/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S90/chr1.bam.pileup.gz > S90/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S90/chr10.bam.pileup.gz > S90/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S90/chr11.bam.pileup.gz > S90/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S90/chr12.bam.pileup.gz > S90/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S90/chr13.bam.pileup.gz > S90/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S90/chr14.bam.pileup.gz > S90/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S90/chr15.bam.pileup.gz > S90/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S90/chr16.bam.pileup.gz > S90/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S90/chr17.bam.pileup.gz > S90/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S90/chr18.bam.pileup.gz > S90/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S90/chr19.bam.pileup.gz > S90/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S90/chr2.bam.pileup.gz > S90/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S90/chr20.bam.pileup.gz > S90/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S90/chr21.bam.pileup.gz > S90/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S90/chr22.bam.pileup.gz > S90/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S90/chr3.bam.pileup.gz > S90/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S90/chr4.bam.pileup.gz > S90/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S90/chr5.bam.pileup.gz > S90/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S90/chr6.bam.pileup.gz > S90/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S90/chr7.bam.pileup.gz > S90/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S90/chr8.bam.pileup.gz > S90/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S90/chr9.bam.pileup.gz > S90/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S90/chrX.bam.pileup.gz > S90/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S90/chrY.bam.pileup.gz > S90/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S91/chr1.bam.pileup.gz > S91/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S91/chr10.bam.pileup.gz > S91/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S91/chr11.bam.pileup.gz > S91/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S91/chr12.bam.pileup.gz > S91/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S91/chr13.bam.pileup.gz > S91/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S91/chr14.bam.pileup.gz > S91/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S91/chr15.bam.pileup.gz > S91/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S91/chr16.bam.pileup.gz > S91/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S91/chr17.bam.pileup.gz > S91/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S91/chr18.bam.pileup.gz > S91/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S91/chr19.bam.pileup.gz > S91/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S91/chr2.bam.pileup.gz > S91/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S91/chr20.bam.pileup.gz > S91/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S91/chr21.bam.pileup.gz > S91/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S91/chr22.bam.pileup.gz > S91/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S91/chr3.bam.pileup.gz > S91/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S91/chr4.bam.pileup.gz > S91/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S91/chr5.bam.pileup.gz > S91/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S91/chr6.bam.pileup.gz > S91/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S91/chr7.bam.pileup.gz > S91/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S91/chr8.bam.pileup.gz > S91/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S91/chr9.bam.pileup.gz > S91/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S91/chrX.bam.pileup.gz > S91/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S91/chrY.bam.pileup.gz > S91/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S92/chr1.bam.pileup.gz > S92/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S92/chr10.bam.pileup.gz > S92/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S92/chr11.bam.pileup.gz > S92/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S92/chr12.bam.pileup.gz > S92/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S92/chr13.bam.pileup.gz > S92/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S92/chr14.bam.pileup.gz > S92/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S92/chr15.bam.pileup.gz > S92/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S92/chr16.bam.pileup.gz > S92/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S92/chr17.bam.pileup.gz > S92/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S92/chr18.bam.pileup.gz > S92/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S92/chr19.bam.pileup.gz > S92/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S92/chr2.bam.pileup.gz > S92/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S92/chr20.bam.pileup.gz > S92/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S92/chr21.bam.pileup.gz > S92/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S92/chr22.bam.pileup.gz > S92/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S92/chr3.bam.pileup.gz > S92/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S92/chr4.bam.pileup.gz > S92/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S92/chr5.bam.pileup.gz > S92/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S92/chr6.bam.pileup.gz > S92/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S92/chr7.bam.pileup.gz > S92/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S92/chr8.bam.pileup.gz > S92/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S92/chr9.bam.pileup.gz > S92/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S92/chrX.bam.pileup.gz > S92/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S92/chrY.bam.pileup.gz > S92/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S93/chr1.bam.pileup.gz > S93/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S93/chr10.bam.pileup.gz > S93/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S93/chr11.bam.pileup.gz > S93/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S93/chr12.bam.pileup.gz > S93/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S93/chr13.bam.pileup.gz > S93/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S93/chr14.bam.pileup.gz > S93/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S93/chr15.bam.pileup.gz > S93/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S93/chr16.bam.pileup.gz > S93/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S93/chr17.bam.pileup.gz > S93/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S93/chr18.bam.pileup.gz > S93/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S93/chr19.bam.pileup.gz > S93/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S93/chr2.bam.pileup.gz > S93/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S93/chr20.bam.pileup.gz > S93/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S93/chr21.bam.pileup.gz > S93/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S93/chr22.bam.pileup.gz > S93/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S93/chr3.bam.pileup.gz > S93/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S93/chr4.bam.pileup.gz > S93/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S93/chr5.bam.pileup.gz > S93/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S93/chr6.bam.pileup.gz > S93/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S93/chr7.bam.pileup.gz > S93/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S93/chr8.bam.pileup.gz > S93/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S93/chr9.bam.pileup.gz > S93/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S93/chrX.bam.pileup.gz > S93/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S93/chrY.bam.pileup.gz > S93/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S94/chr1.bam.pileup.gz > S94/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S94/chr10.bam.pileup.gz > S94/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S94/chr11.bam.pileup.gz > S94/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S94/chr12.bam.pileup.gz > S94/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S94/chr13.bam.pileup.gz > S94/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S94/chr14.bam.pileup.gz > S94/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S94/chr15.bam.pileup.gz > S94/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S94/chr16.bam.pileup.gz > S94/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S94/chr17.bam.pileup.gz > S94/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S94/chr18.bam.pileup.gz > S94/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S94/chr19.bam.pileup.gz > S94/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S94/chr2.bam.pileup.gz > S94/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S94/chr20.bam.pileup.gz > S94/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S94/chr21.bam.pileup.gz > S94/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S94/chr22.bam.pileup.gz > S94/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S94/chr3.bam.pileup.gz > S94/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S94/chr4.bam.pileup.gz > S94/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S94/chr5.bam.pileup.gz > S94/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S94/chr6.bam.pileup.gz > S94/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S94/chr7.bam.pileup.gz > S94/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S94/chr8.bam.pileup.gz > S94/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S94/chr9.bam.pileup.gz > S94/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S94/chrX.bam.pileup.gz > S94/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S94/chrY.bam.pileup.gz > S94/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S95/chr1.bam.pileup.gz > S95/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S95/chr10.bam.pileup.gz > S95/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S95/chr11.bam.pileup.gz > S95/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S95/chr12.bam.pileup.gz > S95/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S95/chr13.bam.pileup.gz > S95/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S95/chr14.bam.pileup.gz > S95/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S95/chr15.bam.pileup.gz > S95/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S95/chr16.bam.pileup.gz > S95/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S95/chr17.bam.pileup.gz > S95/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S95/chr18.bam.pileup.gz > S95/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S95/chr19.bam.pileup.gz > S95/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S95/chr2.bam.pileup.gz > S95/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S95/chr20.bam.pileup.gz > S95/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S95/chr21.bam.pileup.gz > S95/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S95/chr22.bam.pileup.gz > S95/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S95/chr3.bam.pileup.gz > S95/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S95/chr4.bam.pileup.gz > S95/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S95/chr5.bam.pileup.gz > S95/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S95/chr6.bam.pileup.gz > S95/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S95/chr7.bam.pileup.gz > S95/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S95/chr8.bam.pileup.gz > S95/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S95/chr9.bam.pileup.gz > S95/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S95/chrX.bam.pileup.gz > S95/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S95/chrY.bam.pileup.gz > S95/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S96/chr1.bam.pileup.gz > S96/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S96/chr10.bam.pileup.gz > S96/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S96/chr11.bam.pileup.gz > S96/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S96/chr12.bam.pileup.gz > S96/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S96/chr13.bam.pileup.gz > S96/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S96/chr14.bam.pileup.gz > S96/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S96/chr15.bam.pileup.gz > S96/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S96/chr16.bam.pileup.gz > S96/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S96/chr17.bam.pileup.gz > S96/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S96/chr18.bam.pileup.gz > S96/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S96/chr19.bam.pileup.gz > S96/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S96/chr2.bam.pileup.gz > S96/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S96/chr20.bam.pileup.gz > S96/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S96/chr21.bam.pileup.gz > S96/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S96/chr22.bam.pileup.gz > S96/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S96/chr3.bam.pileup.gz > S96/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S96/chr4.bam.pileup.gz > S96/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S96/chr5.bam.pileup.gz > S96/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S96/chr6.bam.pileup.gz > S96/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S96/chr7.bam.pileup.gz > S96/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S96/chr8.bam.pileup.gz > S96/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S96/chr9.bam.pileup.gz > S96/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S96/chrX.bam.pileup.gz > S96/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S96/chrY.bam.pileup.gz > S96/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S97/chr1.bam.pileup.gz > S97/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S97/chr10.bam.pileup.gz > S97/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S97/chr11.bam.pileup.gz > S97/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S97/chr12.bam.pileup.gz > S97/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S97/chr13.bam.pileup.gz > S97/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S97/chr14.bam.pileup.gz > S97/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S97/chr15.bam.pileup.gz > S97/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S97/chr16.bam.pileup.gz > S97/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S97/chr17.bam.pileup.gz > S97/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S97/chr18.bam.pileup.gz > S97/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S97/chr19.bam.pileup.gz > S97/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S97/chr2.bam.pileup.gz > S97/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S97/chr20.bam.pileup.gz > S97/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S97/chr21.bam.pileup.gz > S97/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S97/chr22.bam.pileup.gz > S97/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S97/chr3.bam.pileup.gz > S97/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S97/chr4.bam.pileup.gz > S97/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S97/chr5.bam.pileup.gz > S97/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S97/chr6.bam.pileup.gz > S97/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S97/chr7.bam.pileup.gz > S97/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S97/chr8.bam.pileup.gz > S97/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S97/chr9.bam.pileup.gz > S97/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S97/chrX.bam.pileup.gz > S97/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S97/chrY.bam.pileup.gz > S97/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S98/chr1.bam.pileup.gz > S98/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S98/chr10.bam.pileup.gz > S98/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S98/chr11.bam.pileup.gz > S98/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S98/chr12.bam.pileup.gz > S98/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S98/chr13.bam.pileup.gz > S98/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S98/chr14.bam.pileup.gz > S98/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S98/chr15.bam.pileup.gz > S98/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S98/chr16.bam.pileup.gz > S98/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S98/chr17.bam.pileup.gz > S98/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S98/chr18.bam.pileup.gz > S98/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S98/chr19.bam.pileup.gz > S98/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S98/chr2.bam.pileup.gz > S98/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S98/chr20.bam.pileup.gz > S98/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S98/chr21.bam.pileup.gz > S98/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S98/chr22.bam.pileup.gz > S98/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S98/chr3.bam.pileup.gz > S98/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S98/chr4.bam.pileup.gz > S98/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S98/chr5.bam.pileup.gz > S98/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S98/chr6.bam.pileup.gz > S98/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S98/chr7.bam.pileup.gz > S98/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S98/chr8.bam.pileup.gz > S98/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S98/chr9.bam.pileup.gz > S98/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S98/chrX.bam.pileup.gz > S98/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S98/chrY.bam.pileup.gz > S98/chrY.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr1.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S99/chr1.bam.pileup.gz > S99/chr1.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr10.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S99/chr10.bam.pileup.gz > S99/chr10.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr11.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S99/chr11.bam.pileup.gz > S99/chr11.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr12.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S99/chr12.bam.pileup.gz > S99/chr12.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr13.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S99/chr13.bam.pileup.gz > S99/chr13.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr14.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S99/chr14.bam.pileup.gz > S99/chr14.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr15.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S99/chr15.bam.pileup.gz > S99/chr15.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr16.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S99/chr16.bam.pileup.gz > S99/chr16.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr17.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S99/chr17.bam.pileup.gz > S99/chr17.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr18.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S99/chr18.bam.pileup.gz > S99/chr18.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr19.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S99/chr19.bam.pileup.gz > S99/chr19.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr2.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S99/chr2.bam.pileup.gz > S99/chr2.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr20.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S99/chr20.bam.pileup.gz > S99/chr20.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr21.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S99/chr21.bam.pileup.gz > S99/chr21.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr22.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S99/chr22.bam.pileup.gz > S99/chr22.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr3.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S99/chr3.bam.pileup.gz > S99/chr3.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr4.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S99/chr4.bam.pileup.gz > S99/chr4.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr5.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S99/chr5.bam.pileup.gz > S99/chr5.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr6.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S99/chr6.bam.pileup.gz > S99/chr6.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr7.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S99/chr7.bam.pileup.gz > S99/chr7.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr8.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S99/chr8.bam.pileup.gz > S99/chr8.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chr9.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S99/chr9.bam.pileup.gz > S99/chr9.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrX.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S99/chrX.bam.pileup.gz > S99/chrX.bam.pileup.gz.snp
../../Soure_Codes_atPKU/03.variant_detection/snp_calling/spermsnp -s 0 ../1.2.blood_snp_refine/chrY.bam.cns.snp.het /gpfsdata/Analysis/huxuesong/sperm/bychr/samples_chr/S99/chrY.bam.pileup.gz > S99/chrY.bam.pileup.gz.snp