etc/Server/myjupyterlab.sh

   1 #!/bin/sh
   2
   3 #micromamba create -n nb
   4 #micromamba install -n nb -c conda-forge jupyterlab ipywidgets python[version='>=3.12'] git[version='>=2.44'] conda   #nodejs "libuv[version='>=1.48']"
   5 ######micromamba run -n nb pip3 wheel --no-input --use-pep517 --no-deps -w ./pywhls git+https://github.com/Anaconda-Platform/nb_conda_kernels.git
   6 #micromamba run -n nb pip3 install --no-input --use-pep517 git+https://github.com/Anaconda-Platform/nb_conda_kernels.git
   7
   8 JUPYTERCFGPATH=`micromamba run -n nb jupyter --config-dir`
   9 PASSWORD='Salus107'
  10 HASHEDPW=`printf "from jupyter_server.auth import passwd\nprint(passwd('${PASSWORD}'))"|micromamba run -n nb python3`
  11
  12 printf "
  13 c = get_config()  #noqa
  14 c.ServerApp.allow_remote_access = True
  15 c.ServerApp.ip = '*'
  16 c.ServerApp.open_browser = False
  17 c.ServerApp.port = 10000
  18 c.PasswordIdentityProvider.hashed_password = '${HASHEDPW}'
  19 " > ${JUPYTERCFGPATH}/jupyter_server_config.py
  20
  21 printf '{
  22   "CondaKernelSpecManager": {
  23     "kernelspec_path": "--user"
  24   }
  25 }
  26 ' > ${JUPYTERCFGPATH}/jupyter_server_config.json
  27
  28 printf '#!/bin/sh\nPYDEVD_DISABLE_FILE_VALIDATION=1 micromamba run -n nb python3 -Xfrozen_modules=off -m jupyterlab_server\n' > ${MAMBA_ROOT_PREFIX}/envs/nb/bin/nb
  29 chmod +x ${MAMBA_ROOT_PREFIX}/envs/nb/bin/nb
  30 ls -l ${MAMBA_ROOT_PREFIX}/envs/nb/bin/nb
  31
  32 exit
  33
  34 micromamba install -c conda-forge ipykernel ipywidgets r-irkernel -n salus
  35 micromamba run -n nb python -m nb_conda_kernels list
  36
  37 micromamba run -n salus jupyter kernelspec list
  38 micromamba run -n salus python -m ipykernel install --user --name salus --display-name "Python (salus)"
  39 micromamba run -n salusg python -m ipykernel install --user --name salusg --display-name "Python (salusG)"
  40 # IRkernel::installspec(name = 'atacR', displayname = 'atacR')
  41 Rscript -e "IRkernel::installspec(name = 'atacR2', displayname = 'atacR2')"
  42
  43 micromamba run -n nb jupyter kernelspec list