| blob | 49e991b258b177ac5afdde1068938b8433a459dc |
1 @SQ SN:c2 LN:9
2 @CO
3 @CO mpileup example from https://github.com/samtools/htslib/issues/59
4 @CO with additional Pad cigar operations
5 @CO
6 @CO c2 CC***AA**T**AA***CC
7 @CO
8 @CO +s1 CT***AA**T**AA***TC
9 @CO +s1b CT*******T*******TC
10 @CO +s2 CT*****G***G*****TC
11 @CO +s2p CT*****G***G*****TC
12 @CO +s3 CT*****GG*GG*****TC
13 @CO +s3b CT****CGGCGGC****TC
14 @CO +s4 CT***AAG***GAA***TC
15 @CO +s4p CT***AAG***GAA***TC
16 @CO +s5 CTGGG*********GGGTC
17 @CO
18 s1 0 c2 1 0 9M * 0 0 CTAATAATC XXXXXXXXX
19 s1b 0 c2 1 0 2M2D1M2D2M * 0 0 CTTTC *
20 s2 0 c2 1 0 2M2D1I1D1I2D2M * 0 0 CTGGTC *
21 s2p 0 c2 1 0 2M2D1I1P1D1P1I2D2M * 0 0 CTGGTC *
22 s3 0 c2 1 0 2M2D2I1D2I2D2M * 0 0 CTGGGGTC *
23 s3b 0 c2 1 0 2M1D1M2I1M2I1M1D2M * 0 0 CTCGGCGGCTC *
24 s4 0 c2 1 0 4M1I1D1I4M * 0 0 CTAAGGAATC *
25 s4p 0 c2 1 0 4M1I1P1D1P1I4M * 0 0 CTAAGGAATC *
26 s5 0 c2 1 0 2M3I5D3I2M * 0 0 CTGGGGGGTC *