Public Git Hosting - MACS.git/commit

commit	fa84fa2a7199085efdc60e2e8b5a6d822b4abc81
author	Tao Liu <vladimir.liu@gmail.com>
	Fri, 26 Apr 2024 19:40:56 +0000 (26 15:40 -0400)
committer	Tao Liu <vladimir.liu@gmail.com>
	Fri, 26 Apr 2024 19:40:56 +0000 (26 15:40 -0400)
tree	5f03abaf4a07df6329546c05ff7fc979a6644c37	tree \| snapshot (tar.gz zip)
parent	295c64d4a2ffd8e00d31d11d89307613ab3a0c96	commit \| diff

update docs

59 files changed:

.github/workflows/build-and-test-MACS3-macos.yml		diff \| blob \| blame \| history
.github/workflows/build-and-test-MACS3-non-x64.yml		diff \| blob \| blame \| history
.github/workflows/build-and-test-MACS3-x64.yml		diff \| blob \| blame \| history
MACS3/Utilities/OptValidator.py		diff \| blob \| blame \| history
docs/Advanced_Step-by-step_Peak_Calling.md	[copied from docs/source/docs/Advanced_Step-by-step_Peak_Calling.md with 100% similarity]	blob \| blame \| history
docs/INSTALL.md	[copied from docs/source/docs/INSTALL.md with 100% similarity]	blob \| blame \| history
docs/bdgbroadcall.md	[copied from docs/source/docs/bdgbroadcall.md with 100% similarity]	blob \| blame \| history
docs/bdgcmp.md	[copied from docs/source/docs/bdgcmp.md with 100% similarity]	blob \| blame \| history
docs/bdgdiff.md	[copied from docs/source/docs/bdgdiff.md with 100% similarity]	blob \| blame \| history
docs/bdgopt.md	[copied from docs/source/docs/bdgopt.md with 100% similarity]	blob \| blame \| history
docs/bdgpeakcall.md	[copied from docs/source/docs/bdgpeakcall.md with 100% similarity]	blob \| blame \| history
docs/callpeak.md	[copied from docs/source/docs/callpeak.md with 100% similarity]	blob \| blame \| history
docs/callvar.md	[copied from docs/source/docs/callvar.md with 100% similarity]	blob \| blame \| history
docs/callvar_algorithm.jpeg	[copied from docs/source/docs/callvar_algorithm.jpeg with 100% similarity]	blob \| blame \| history
docs/cmbreps.md	[copied from docs/source/docs/cmbreps.md with 100% similarity]	blob \| blame \| history
docs/filterdup.md	[copied from docs/source/docs/filterdup.md with 100% similarity]	blob \| blame \| history
docs/hmmratac.md	[copied from docs/source/docs/hmmratac.md with 100% similarity]	blob \| blame \| history
docs/pileup.md	[copied from docs/source/docs/pileup.md with 100% similarity]	blob \| blame \| history
docs/pileup.png	[copied from docs/source/docs/pileup.png with 100% similarity]	blob \| blame \| history
docs/predictd.md	[copied from docs/source/docs/predictd.md with 100% similarity]	blob \| blame \| history
docs/qa.md	[copied from docs/source/docs/qa.md with 100% similarity]	blob \| blame \| history
docs/randsample.md	[copied from docs/source/docs/randsample.md with 100% similarity]	blob \| blame \| history
docs/refinepeak.md	[copied from docs/source/docs/refinepeak.md with 100% similarity]	blob \| blame \| history
docs/source/conf.py		diff \| blob \| blame \| history
docs/source/docs/Advanced_Step-by-step_Peak_Calling.md	[changed from file to symlink]	diff \| blob \| blame \| history
docs/source/docs/BED.md	[deleted file]	blob \| blame \| history
docs/source/docs/BEDPE.md	[deleted file]	blob \| blame \| history
docs/source/docs/INSTALL.md	[changed from file to symlink]	diff \| blob \| blame \| history
docs/source/docs/SAMBAMBAMPE.md	[deleted file]	blob \| blame \| history
docs/source/docs/bdgbroadcall.md	[changed from file to symlink]	diff \| blob \| blame \| history
docs/source/docs/bdgcmp.md	[changed from file to symlink]	diff \| blob \| blame \| history
docs/source/docs/bdgdiff.md	[changed from file to symlink]	diff \| blob \| blame \| history
docs/source/docs/bdgopt.md	[changed from file to symlink]	diff \| blob \| blame \| history
docs/source/docs/bdgpeakcall.md	[changed from file to symlink]	diff \| blob \| blame \| history
docs/source/docs/bedGraph.md	[deleted file]	blob \| blame \| history
docs/source/docs/broadPeak.md	[deleted file]	blob \| blame \| history
docs/source/docs/callpeak.md	[changed from file to symlink]	diff \| blob \| blame \| history
docs/source/docs/callpeakxls.md	[deleted file]	blob \| blame \| history
docs/source/docs/callvar.md	[changed from file to symlink]	diff \| blob \| blame \| history
docs/source/docs/callvar_algorithm.jpeg	[changed from file to symlink]	diff \| blob \| blame \| history
docs/source/docs/cmbreps.md	[changed from file to symlink]	diff \| blob \| blame \| history
docs/source/docs/cutoffanalysis.md	[deleted file]	blob \| blame \| history
docs/source/docs/fileformats_index.md	[deleted file]	blob \| blame \| history
docs/source/docs/filterdup.md	[changed from file to symlink]	diff \| blob \| blame \| history
docs/source/docs/gappedPeak.md	[deleted file]	blob \| blame \| history
docs/source/docs/hmmratac.md	[changed from file to symlink]	diff \| blob \| blame \| history
docs/source/docs/hmmratacModel.md	[deleted file]	blob \| blame \| history
docs/source/docs/index.md	[moved from docs/source/docs/subcommands_index.md with 100% similarity]	blob \| blame \| history
docs/source/docs/narrowPeak.md	[deleted file]	blob \| blame \| history
docs/source/docs/pileup.md	[changed from file to symlink]	diff \| blob \| blame \| history
docs/source/docs/pileup.png	[changed from file to symlink]	diff \| blob \| blame \| history
docs/source/docs/predictd.md	[changed from file to symlink]	diff \| blob \| blame \| history
docs/source/docs/qa.md	[changed from file to symlink]	diff \| blob \| blame \| history
docs/source/docs/randsample.md	[changed from file to symlink]	diff \| blob \| blame \| history
docs/source/docs/refinepeak.md	[changed from file to symlink]	diff \| blob \| blame \| history
docs/source/docs/tutorial.md	[changed from file to symlink]	diff \| blob \| blame \| history
docs/source/docs/vcf.md	[deleted file]	blob \| blame \| history
docs/source/index.md		diff \| blob \| blame \| history
docs/tutorial.md	[copied from docs/source/docs/tutorial.md with 100% similarity]	blob \| blame \| history

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