pkgs/development/python-modules/dicom2nifti/default.nix

   1 {
   2   lib,
   3   buildPythonPackage,
   4   fetchFromGitHub,
   5   pythonOlder,
   6   pytestCheckHook,
   7   gdcm,
   8   nibabel,
   9   numpy,
  10   pydicom,
  11   pylibjpeg,
  12   pylibjpeg-libjpeg,
  13   scipy,
  14   setuptools,
  15 }:
  16
  17 buildPythonPackage rec {
  18   pname = "dicom2nifti";
  19   version = "2.4.11";
  20   pyproject = true;
  21
  22   disabled = pythonOlder "3.6";
  23
  24   # no tests in PyPI dist
  25   src = fetchFromGitHub {
  26     owner = "icometrix";
  27     repo = pname;
  28     rev = "refs/tags/${version}";
  29     hash = "sha256-/JauQZcCQDl1ukcSE3YPbf1SyhVxDNJUlqnFwdlwYQY=";
  30   };
  31
  32   build-system = [ setuptools ];
  33
  34   propagatedBuildInputs = [
  35     gdcm
  36     nibabel
  37     numpy
  38     pydicom
  39     scipy
  40   ];
  41
  42   postPatch = ''
  43     substituteInPlace tests/test_generic.py --replace-fail "from common" "from dicom2nifti.common"
  44     substituteInPlace tests/test_ge.py --replace-fail "import convert_generic" "import dicom2nifti.convert_generic as convert_generic"
  45   '';
  46
  47   nativeCheckInputs = [
  48     pytestCheckHook
  49     pylibjpeg
  50     pylibjpeg-libjpeg
  51   ];
  52
  53   pythonImportsCheck = [ "dicom2nifti" ];
  54
  55   meta = with lib; {
  56     homepage = "https://github.com/icometrix/dicom2nifti";
  57     description = "Library for converting dicom files to nifti";
  58     mainProgram = "dicom2nifti";
  59     license = licenses.mit;
  60     maintainers = with maintainers; [ bcdarwin ];
  61   };
  62 }