pkgs/development/python-modules/dipy/default.nix

   1 { lib
   2 , buildPythonPackage
   3 , fetchFromGitHub
   4 , pythonOlder
   5 , packaging
   6 , cython
   7 , numpy
   8 , scipy
   9 , h5py
  10 , nibabel
  11 , tqdm
  12 }:
  13
  14 buildPythonPackage rec {
  15   pname = "dipy";
  16   version = "1.7.0";
  17   format = "setuptools";
  18
  19   disabled = pythonOlder "3.6";
  20
  21   src = fetchFromGitHub {
  22     owner = "dipy";
  23     repo = pname;
  24     rev = "refs/tags/${version}";
  25     hash = "sha256-sfqCK2r9Io1gDDHL9s9R37J0h9KcOQML3B2zJx2+QuA=";
  26   };
  27
  28   nativeBuildInputs = [
  29     cython
  30     packaging
  31   ];
  32
  33   propagatedBuildInputs = [
  34     numpy
  35     scipy
  36     h5py
  37     nibabel
  38     tqdm
  39   ];
  40
  41   # disable tests for now due to:
  42   #   - some tests require data download (see dipy/dipy/issues/2092);
  43   #   - running the tests manually causes a multiprocessing hang;
  44   #   - import weirdness when running the tests
  45   doCheck = false;
  46
  47   pythonImportsCheck = [
  48     "dipy"
  49     "dipy.core"
  50     "dipy.direction"
  51     "dipy.tracking"
  52     "dipy.reconst"
  53     "dipy.io"
  54     "dipy.viz"
  55     "dipy.boots"
  56     "dipy.data"
  57     "dipy.utils"
  58     "dipy.segment"
  59     "dipy.sims"
  60     "dipy.stats"
  61     "dipy.denoise"
  62     "dipy.workflows"
  63     "dipy.nn"
  64   ];
  65
  66   meta = with lib; {
  67     homepage = "https://dipy.org/";
  68     description = "Diffusion imaging toolkit for Python";
  69     changelog = "https://github.com/dipy/dipy/blob/${version}/Changelog";
  70     license = licenses.bsd3;
  71     maintainers = with maintainers; [ bcdarwin ];
  72   };
  73 }