emboss/PKGBUILD

   1 # Maintainer: Michael Schubert <mschu.dev at gmail>
   2 # Contributor: moostik <mooostik_at_gmail.com>
   3 # Contributor: mick elliot <micke@sfu.ca>
   4 pkgname=emboss
   5 _pkgname=EMBOSS
   6 pkgver=6.4.0
   7 pkgrel=1
   8 pkgdesc="A collection of molecular biology applications"
   9 arch=('x86_64' 'i686')
  10 url="http://emboss.sourceforge.net/"
  11 depends=('gd' 'libx11' 'pcre' 'java-runtime' 'libmysqlclient' 'postgresql-libs')
  12 options=('!libtool')
  13 license=('GPL2')
  14 source=("ftp://emboss.open-bio.org/pub/EMBOSS/${_pkgname}-$pkgver.tar.gz")
  15 md5sums=('54993a22064222b01bd4fc8086f7684d')
  16
  17 build() {
  18   cd "${srcdir}/${_pkgname}-$pkgver"
  19   CFLAGS="${CFLAGS} -I${JAVA_HOME}/include"
  20   ./configure --prefix=/usr --enable-large --with-x \
  21         --with-javaos="${JAVA_HOME}/include/linux"
  22   make
  23   find . -name "Makefile" | xargs sed -i "s:/usr/bin/install:/bin/install:"
  24 }
  25
  26 package() {
  27   cd "${srcdir}/${_pkgname}-$pkgver"
  28   make prefix="${pkgdir}/usr" install
  29   rm -f "${pkgdir}/usr/include/{pcre,pcreposix}.h"
  30 }