Bio::Root::RootI: deprecate deprecated() method (issue #294)
commit2cbe4591d572519ff84cbdabc3471770ed7ad93d
authorCarnë Draug <carandraug+dev@gmail.com>
Thu, 7 Feb 2019 21:23:40 +0000 (7 21:23 +0000)
committerCarnë Draug <carandraug+dev@gmail.com>
Thu, 7 Feb 2019 21:43:47 +0000 (7 21:43 +0000)
tree4f4f997408d71f357ca6ff6b89cdd552a229f660
parenta678a581d241962968e5405411eece49433c6353
Bio::Root::RootI: deprecate deprecated() method (issue #294)

This method is not worth it.  If something is deprecated, then it is
deprecated then, not in a future version.  And then eventually gets
removed.  Either the code is there and runs with a warning about
deprecation, or the code is not there in which case it dies.

This removes some methods that were supposed to throw() starting
with 1.7.5 (which will be the next release).
17 files changed:
Changes
lib/Bio/Align/AlignI.pm
lib/Bio/Annotation/Collection.pm
lib/Bio/Annotation/OntologyTerm.pm
lib/Bio/DB/WebDBSeqI.pm
lib/Bio/LocatableSeq.pm
lib/Bio/Ontology/Term.pm
lib/Bio/Root/RootI.pm
lib/Bio/SearchIO/infernal.pm
lib/Bio/Seq.pm
lib/Bio/Seq/SeqWithQuality.pm
lib/Bio/SeqFeature/Generic.pm
lib/Bio/SeqFeature/Primer.pm
lib/Bio/SeqFeature/SimilarityPair.pm
lib/Bio/SimpleAlign.pm
lib/Bio/Tree/TreeFunctionsI.pm
t/Root/RootI.t