Public Git Hosting - bioperl-live.git/commit

commit	54c99cf41175326333c99b9a2dca4b9eac17d64c
author	Carnë Draug <carandraug+dev@gmail.com>
	Wed, 30 Aug 2017 18:17:37 +0000 (30 19:17 +0100)
committer	Carnë Draug <carandraug+dev@gmail.com>
	Wed, 30 Aug 2017 18:17:37 +0000 (30 19:17 +0100)
tree	80f40957f2a7a376f3e976b46f44ac61087a4401	tree \| snapshot (tar.gz zip)
parent	b74c1aee4d27908e95732e465452cba18a246d8d	commit \| diff

maint: fix multiple typos identified by lintian

179 files changed:

Bio/AnalysisI.pm		diff \| blob \| blame \| history
Bio/Annotation/OntologyTerm.pm		diff \| blob \| blame \| history
Bio/AnnotationCollectionI.pm		diff \| blob \| blame \| history
Bio/Assembly/Contig.pm		diff \| blob \| blame \| history
Bio/Assembly/ScaffoldI.pm		diff \| blob \| blame \| history
Bio/Assembly/Singlet.pm		diff \| blob \| blame \| history
Bio/Assembly/Tools/ContigSpectrum.pm		diff \| blob \| blame \| history
Bio/Cluster/UniGene.pm		diff \| blob \| blame \| history
Bio/DB/EMBL.pm		diff \| blob \| blame \| history
Bio/DB/Fasta.pm		diff \| blob \| blame \| history
Bio/DB/GFF.pm		diff \| blob \| blame \| history
Bio/DB/GFF/Adaptor/dbi.pm		diff \| blob \| blame \| history
Bio/DB/GFF/Adaptor/dbi/mysql.pm		diff \| blob \| blame \| history
Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm		diff \| blob \| blame \| history
Bio/DB/GFF/Adaptor/dbi/oracle.pm		diff \| blob \| blame \| history
Bio/DB/GFF/Adaptor/dbi/pg.pm		diff \| blob \| blame \| history
Bio/DB/GFF/Segment.pm		diff \| blob \| blame \| history
Bio/DB/GenBank.pm		diff \| blob \| blame \| history
Bio/DB/GenPept.pm		diff \| blob \| blame \| history
Bio/DB/HIV/HIVQueryHelper.pm		diff \| blob \| blame \| history
Bio/DB/IndexedBase.pm		diff \| blob \| blame \| history
Bio/DB/MeSH.pm		diff \| blob \| blame \| history
Bio/DB/Qual.pm		diff \| blob \| blame \| history
Bio/DB/Query/HIVQuery.pm		diff \| blob \| blame \| history
Bio/DB/RefSeq.pm		diff \| blob \| blame \| history
Bio/DB/SeqFeature/Store.pm		diff \| blob \| blame \| history
Bio/DB/SeqFeature/Store/GFF2Loader.pm		diff \| blob \| blame \| history
Bio/DB/SeqFeature/Store/GFF3Loader.pm		diff \| blob \| blame \| history
Bio/DB/SeqFeature/Store/Loader.pm		diff \| blob \| blame \| history
Bio/DB/TFBS/transfac_pro.pm		diff \| blob \| blame \| history
Bio/DB/Taxonomy/flatfile.pm		diff \| blob \| blame \| history
Bio/DB/Taxonomy/sqlite.pm		diff \| blob \| blame \| history
Bio/DB/WebDBSeqI.pm		diff \| blob \| blame \| history
Bio/DescribableI.pm		diff \| blob \| blame \| history
Bio/Factory/ObjectFactoryI.pm		diff \| blob \| blame \| history
Bio/Index/Abstract.pm		diff \| blob \| blame \| history
Bio/Index/AbstractSeq.pm		diff \| blob \| blame \| history
Bio/Index/Blast.pm		diff \| blob \| blame \| history
Bio/Index/BlastTable.pm		diff \| blob \| blame \| history
Bio/Index/Hmmer.pm		diff \| blob \| blame \| history
Bio/Index/Stockholm.pm		diff \| blob \| blame \| history
Bio/LiveSeq/IO/Loader.pm		diff \| blob \| blame \| history
Bio/LiveSeq/IO/README		diff \| blob \| blame \| history
Bio/LiveSeq/Mutation.pm		diff \| blob \| blame \| history
Bio/LiveSeq/SeqI.pm		diff \| blob \| blame \| history
Bio/LocatableSeq.pm		diff \| blob \| blame \| history
Bio/Location/Atomic.pm		diff \| blob \| blame \| history
Bio/Location/Fuzzy.pm		diff \| blob \| blame \| history
Bio/Location/FuzzyLocationI.pm		diff \| blob \| blame \| history
Bio/Location/Simple.pm		diff \| blob \| blame \| history
Bio/Location/Split.pm		diff \| blob \| blame \| history
Bio/Location/SplitLocationI.pm		diff \| blob \| blame \| history
Bio/LocationI.pm		diff \| blob \| blame \| history
Bio/Map/CytoMarker.pm		diff \| blob \| blame \| history
Bio/Map/CytoPosition.pm		diff \| blob \| blame \| history
Bio/Map/GeneRelative.pm		diff \| blob \| blame \| history
Bio/Map/Microsatellite.pm		diff \| blob \| blame \| history
Bio/Map/OrderedPosition.pm		diff \| blob \| blame \| history
Bio/Map/Physical.pm		diff \| blob \| blame \| history
Bio/Map/Position.pm		diff \| blob \| blame \| history
Bio/Map/PositionI.pm		diff \| blob \| blame \| history
Bio/Map/Relative.pm		diff \| blob \| blame \| history
Bio/Map/TranscriptionFactor.pm		diff \| blob \| blame \| history
Bio/Matrix/PSM/IO.pm		diff \| blob \| blame \| history
Bio/Matrix/PSM/IO/masta.pm		diff \| blob \| blame \| history
Bio/Matrix/PSM/InstanceSite.pm		diff \| blob \| blame \| history
Bio/Matrix/PSM/ProtMatrix.pm		diff \| blob \| blame \| history
Bio/Matrix/PSM/ProtPsm.pm		diff \| blob \| blame \| history
Bio/Matrix/PSM/Psm.pm		diff \| blob \| blame \| history
Bio/Matrix/PSM/PsmI.pm		diff \| blob \| blame \| history
Bio/Matrix/PSM/SiteMatrix.pm		diff \| blob \| blame \| history
Bio/Matrix/PSM/SiteMatrixI.pm		diff \| blob \| blame \| history
Bio/Ontology/OntologyStore.pm		diff \| blob \| blame \| history
Bio/Ontology/SimpleOntologyEngine.pm		diff \| blob \| blame \| history
Bio/Ontology/Term.pm		diff \| blob \| blame \| history
Bio/Ontology/TermI.pm		diff \| blob \| blame \| history
Bio/OntologyIO/Handlers/BaseSAXHandler.pm		diff \| blob \| blame \| history
Bio/OntologyIO/Handlers/InterPro_BioSQL_Handler.pm		diff \| blob \| blame \| history
Bio/OntologyIO/obo.pm		diff \| blob \| blame \| history
Bio/Perl.pm		diff \| blob \| blame \| history
Bio/PhyloNetwork/muVector.pm		diff \| blob \| blame \| history
Bio/PopGen/HtSNP.pm		diff \| blob \| blame \| history
Bio/PopGen/Individual.pm		diff \| blob \| blame \| history
Bio/PopGen/Population.pm		diff \| blob \| blame \| history
Bio/PopGen/TagHaplotype.pm		diff \| blob \| blame \| history
Bio/PrimarySeq.pm		diff \| blob \| blame \| history
Bio/PrimarySeqI.pm		diff \| blob \| blame \| history
Bio/PullParserI.pm		diff \| blob \| blame \| history
Bio/Restriction/Analysis.pm		diff \| blob \| blame \| history
Bio/Restriction/Enzyme.pm		diff \| blob \| blame \| history
Bio/Restriction/EnzymeI.pm		diff \| blob \| blame \| history
Bio/Restriction/IO/base.pm		diff \| blob \| blame \| history
Bio/Restriction/IO/itype2.pm		diff \| blob \| blame \| history
Bio/Root/Exception.pm		diff \| blob \| blame \| history
Bio/Root/Root.pm		diff \| blob \| blame \| history
Bio/Root/Storable.pm		diff \| blob \| blame \| history
Bio/Root/Test.pm		diff \| blob \| blame \| history
Bio/Root/Utilities.pm		diff \| blob \| blame \| history
Bio/Search/BlastUtils.pm		diff \| blob \| blame \| history
Bio/Search/HSP/BlastPullHSP.pm		diff \| blob \| blame \| history
Bio/Search/HSP/GenericHSP.pm		diff \| blob \| blame \| history
Bio/Search/HSP/HMMERHSP.pm		diff \| blob \| blame \| history
Bio/Search/HSP/HSPI.pm		diff \| blob \| blame \| history
Bio/Search/HSP/ModelHSP.pm		diff \| blob \| blame \| history
Bio/Search/HSP/PullHSPI.pm		diff \| blob \| blame \| history
Bio/Search/Hit/GenericHit.pm		diff \| blob \| blame \| history
Bio/Search/Hit/HMMERHit.pm		diff \| blob \| blame \| history
Bio/Search/Hit/ModelHit.pm		diff \| blob \| blame \| history
Bio/Search/Iteration/IterationI.pm		diff \| blob \| blame \| history
Bio/Search/SearchUtils.pm		diff \| blob \| blame \| history
Bio/Search/Tiling/TilingI.pm		diff \| blob \| blame \| history
Bio/SearchDist.pm		diff \| blob \| blame \| history
Bio/SearchIO/Writer/HTMLResultWriter.pm		diff \| blob \| blame \| history
Bio/SearchIO/Writer/TextResultWriter.pm		diff \| blob \| blame \| history
Bio/SearchIO/exonerate.pm		diff \| blob \| blame \| history
Bio/SearchIO/hmmer3.pm		diff \| blob \| blame \| history
Bio/Seq.pm		diff \| blob \| blame \| history
Bio/Seq/EncodedSeq.pm		diff \| blob \| blame \| history
Bio/Seq/Meta/Array.pm		diff \| blob \| blame \| history
Bio/Seq/MetaI.pm		diff \| blob \| blame \| history
Bio/Seq/PrimaryQual.pm		diff \| blob \| blame \| history
Bio/Seq/PrimedSeq.pm		diff \| blob \| blame \| history
Bio/Seq/QualI.pm		diff \| blob \| blame \| history
Bio/Seq/RichSeqI.pm		diff \| blob \| blame \| history
Bio/Seq/SeqBuilder.pm		diff \| blob \| blame \| history
Bio/Seq/SeqWithQuality.pm		diff \| blob \| blame \| history
Bio/Seq/SequenceTrace.pm		diff \| blob \| blame \| history
Bio/Seq/SimulatedRead.pm		diff \| blob \| blame \| history
Bio/SeqFeature/Computation.pm		diff \| blob \| blame \| history
Bio/SeqFeature/Generic.pm		diff \| blob \| blame \| history
Bio/SeqFeature/Lite.pm		diff \| blob \| blame \| history
Bio/SeqFeature/PositionProxy.pm		diff \| blob \| blame \| history
Bio/SeqFeature/SubSeq.pm		diff \| blob \| blame \| history
Bio/SeqFeature/Tools/Unflattener.pm		diff \| blob \| blame \| history
Bio/SeqFeature/TypedSeqFeatureI.pm		diff \| blob \| blame \| history
Bio/SeqIO/ace.pm		diff \| blob \| blame \| history
Bio/SeqIO/bsml.pm		diff \| blob \| blame \| history
Bio/SeqIO/chadoxml.pm		diff \| blob \| blame \| history
Bio/SeqIO/chaos.pm		diff \| blob \| blame \| history
Bio/SeqIO/embl.pm		diff \| blob \| blame \| history
Bio/SeqIO/fasta.pm		diff \| blob \| blame \| history
Bio/SeqIO/fastq.pm		diff \| blob \| blame \| history
Bio/SeqIO/game/gameHandler.pm		diff \| blob \| blame \| history
Bio/SeqIO/gcg.pm		diff \| blob \| blame \| history
Bio/SeqIO/genbank.pm		diff \| blob \| blame \| history
Bio/SeqIO/interpro.pm		diff \| blob \| blame \| history
Bio/SeqIO/lasergene.pm		diff \| blob \| blame \| history
Bio/SeqIO/mbsout.pm		diff \| blob \| blame \| history
Bio/SeqIO/msout.pm		diff \| blob \| blame \| history
Bio/SeqIO/seqxml.pm		diff \| blob \| blame \| history
Bio/SeqIO/swiss.pm		diff \| blob \| blame \| history
Bio/SeqIO/tigr.pm		diff \| blob \| blame \| history
Bio/SeqUtils.pm		diff \| blob \| blame \| history
Bio/Structure/Entry.pm		diff \| blob \| blame \| history
Bio/Structure/Residue.pm		diff \| blob \| blame \| history
Bio/Structure/SecStr/STRIDE/Res.pm		diff \| blob \| blame \| history
Bio/Taxonomy.pm		diff \| blob \| blame \| history
Bio/Tools/Analysis/DNA/ESEfinder.pm		diff \| blob \| blame \| history
Bio/Tools/Analysis/Protein/ELM.pm		diff \| blob \| blame \| history
Bio/Tools/Analysis/Protein/NetPhos.pm		diff \| blob \| blame \| history
Bio/Tools/ECnumber.pm		diff \| blob \| blame \| history
Bio/Tools/GFF.pm		diff \| blob \| blame \| history
Bio/Tools/Phylo/Gerp.pm		diff \| blob \| blame \| history
Bio/Tools/Phylo/PAML/Result.pm		diff \| blob \| blame \| history
Bio/Tools/SiRNA.pm		diff \| blob \| blame \| history
Bio/Tools/Sigcleave.pm		diff \| blob \| blame \| history
Bio/Tools/dpAlign.pm		diff \| blob \| blame \| history
Bio/Tools/pSW.pm		diff \| blob \| blame \| history
Bio/Tree/AlleleNode.pm		diff \| blob \| blame \| history
Bio/Tree/NodeI.pm		diff \| blob \| blame \| history
Bio/Tree/TreeFunctionsI.pm		diff \| blob \| blame \| history
Bio/TreeIO/nexus.pm		diff \| blob \| blame \| history
Bio/TreeIO/pag.pm		diff \| blob \| blame \| history
Bio/Variation/AAReverseMutate.pm		diff \| blob \| blame \| history
Bio/Variation/VariantI.pm		diff \| blob \| blame \| history
scripts/DB/bp_flanks.pl		diff \| blob \| blame \| history
scripts/index/bp_fetch.pl		diff \| blob \| blame \| history
scripts/index/bp_index.pl		diff \| blob \| blame \| history
scripts/seq/bp_unflatten_seq.pl		diff \| blob \| blame \| history

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