| commit | 7a28711dd75c0a42b95bb0ec28da6336f43c1d70 | |
| author | David Miguel Susano Pinto <carandraug+dev@gmail.com> | |
| Fri, 26 Apr 2024 14:05:07 +0000 (26 15:05 +0100) | ||
| committer | David Miguel Susano Pinto <carandraug+dev@gmail.com> | |
| Fri, 26 Apr 2024 15:03:06 +0000 (26 16:03 +0100) | ||
| tree | aae728b23f7df242ddf12f181947903c0b5fae08 | treesnapshot (tar.gz zip) |
| parent | ffd0c217598df56346828bbf00d887e8e7b27378 | commitdiff |
Bio::Tools::CodonTable::is_start_codon: check in case of ambiguous codons (#266)
In the case of ambiguous codons this method should only return true if
all possible codons are start codons (same as is_ter_codon). This was
the behaviour in BioPerl 1.2.3 but since at least BioPerl 1.6.924 it
returns true if at least one codon is a start codon.
This change fixes that regression and makes behaviour consistent with
is_ter_codon.
In the case of ambiguous codons this method should only return true if
all possible codons are start codons (same as is_ter_codon). This was
the behaviour in BioPerl 1.2.3 but since at least BioPerl 1.6.924 it
returns true if at least one codon is a start codon.
This change fixes that regression and makes behaviour consistent with
is_ter_codon.
| Changes | diffblobblamehistory | |
| lib/Bio/Tools/CodonTable.pm | diffblobblamehistory | |
| t/SeqTools/CodonTable.t | diffblobblamehistory |