From 9ce0d304f42ef3a6808e7e94be42cb56bb51068d Mon Sep 17 00:00:00 2001
From: David Miguel Susano Pinto <carandraug+dev@gmail.com>
Date: Fri, 26 Apr 2024 16:06:36 +0100
Subject: [PATCH] maint: remove Travis stuff which has been replaced with
 Github actions (#325)

---
 .travis.yml                         | 86 -------------------------------------
 travis_scripts/dependency_installs  | 24 -----------
 travis_scripts/trigger-dockerhub.sh | 54 -----------------------
 3 files changed, 164 deletions(-)
 delete mode 100644 .travis.yml
 delete mode 100755 travis_scripts/dependency_installs
 delete mode 100755 travis_scripts/trigger-dockerhub.sh

diff --git a/.travis.yml b/.travis.yml
deleted file mode 100644
index 55d65a321..000000000
--- a/.travis.yml
+++ /dev/null
@@ -1,86 +0,0 @@
-language: perl
-perl:
-  - "5.26"
-  - "5.24"
-  - "5.20"
-  - "5.18"
-  - "5.16"
-
-matrix:
-  include:
-    - perl: 5.18
-      env: COVERAGE=1 TEST_PARTITION=1
-    - perl: 5.18
-      env: COVERAGE=1 TEST_PARTITION=2
-    - perl: 5.18
-      env: COVERAGE=1 TEST_PARTITION=3
-    - perl: 5.18
-      env: COVERAGE=1 TEST_PARTITION=4
-    - perl: 5.18
-      env: COVERAGE=1 TEST_PARTITION=5
-    - perl: 5.18
-      env: COVERAGE=1 TEST_PARTITION=6
-
-sudo: false
-env:
-  global:
-    - PERL_CPANM_OPT="--notest --force --skip-satisfied"
-    - BIOPERL_NETWORK_TESTING=0   # disables the network tests
-    - TEST_PARTITIONS=6
-
-addons:
-  apt:
-    packages:
-      - libdb-dev
-      - graphviz
-      - libgd2-xpm-dev
-      - libxml2-dev
-
-before_install:
-  - export BRANCH=$(if [ "$TRAVIS_PULL_REQUEST" == "false" ]; then echo $TRAVIS_BRANCH; else echo $TRAVIS_PULL_REQUEST_BRANCH; fi)
-  - git clone git://github.com/travis-perl/helpers ~/travis-perl-helpers
-  - source ~/travis-perl-helpers/init
-  - build-perl
-  - perl -V
-  - cpanm DBD::mysql DBD::Pg DBD::SQLite 2>&1 | tail -n 1
-  - cpanm Test::Pod 2>&1 | tail -n 1
-  - cpanm Bio::ASN1::EntrezGene 2>&1 | tail -n 1
-  - if [ "$TRAVIS_EVENT_TYPE" = "cron" -a "$BRANCH" = "network-cron-master" ]; then
-      export BIOPERL_NETWORK_TESTING=1;
-      git fetch origin master:master; git checkout master;
-    fi
-  - if [ "$BIOPERL_NETWORK_TESTING" = "1" ]; then
-      export TRAVIS_AUTHOR_TESTING=1;
-      export TRAVIS_RELEASE_TESTING=1;
-      cpanm LWP::UserAgent LWP::Protocol::https 2>&1 | tail -n 1;
-    fi
-  - build-dist
-  - cd $BUILD_DIR
-install:
-  - cpan-install --deps
-  - cpan-install --coverage
-before_script:
-  - coverage-setup
-script:
-  - export AUTHOR_TESTING=${TRAVIS_AUTHOR_TESTING:=0}
-  - export RELEASE_TESTING=${TRAVIS_RELEASE_TESTING:=0}
-  - prove -l -j$(test-jobs) $(test-files)
-after_success:
-  - coverage-report
-  - ./travis_scripts/trigger-dockerhub.sh
-
-#TODO - send emails to bioperl-guts-l
-notifications:
-  email:
-    recipients:
-      - bioperl-guts-l@lists.open-bio.org
-      - cjfields1@gmail.com
-    on_success: change
-    on_failure: change
-
-# whitelist branches
-branches:
-  only:
-    - master
-    - /^release-[1-9]*-[0-9]*-[0-9]*$/
-    - network-cron-master
diff --git a/travis_scripts/dependency_installs b/travis_scripts/dependency_installs
deleted file mode 100755
index b11b14ad4..000000000
--- a/travis_scripts/dependency_installs
+++ /dev/null
@@ -1,24 +0,0 @@
-#!/bin/bash
-
-mkdir travis_builds
-
-cd travis_builds
-
-# samtools
-git clone https://github.com/samtools/samtools.git
-cd samtools
-git checkout tags/0.1.18
-perl -p -i -e 's/^(CFLAGS=\s+)[^\n]*/$1-g -Wall -O2 -fPIC #-m64 #-arch ppc/' Makefile
-make 2>&1 | tail -n 1
-cd ..
-
-# push Bio-Root to front
-# git clone https://github.com/bioperl/Bio-Root.git
-# export PERL5LIB=$( pwd )/Bio-Root/lib:$( pwd ):$PERL5LIB
-
-export SAMTOOLS=$( pwd )/samtools
-
-echo "Bio::DB::Sam installation"
-cpanm Bio::DB::Sam 2>&1 | tail -n 10
-
-exit 0
diff --git a/travis_scripts/trigger-dockerhub.sh b/travis_scripts/trigger-dockerhub.sh
deleted file mode 100755
index 36bb789ce..000000000
--- a/travis_scripts/trigger-dockerhub.sh
+++ /dev/null
@@ -1,54 +0,0 @@
-#!/bin/bash
-
-set -e
-
-# the Docker Hub API endpoint
-dockerapi="https://registry.hub.docker.com/u/bioperl/bioperl/trigger"
-
-## Travis runs a build for several versions of Perl, but we want to
-## trigger only for the same version of Perl as is running in the
-## Docker container
-docker_perl="5.18"
-
-if [[ ${TRAVIS_PERL_VERSION:0:4} != "$docker_perl" ]] ; then
-    echo "Triggering Docker Hub only for Perl $docker_perl, not $TRAVIS_PERL_VERSION"
-    exit 0
-fi
-
-if [[ "$TRAVIS_PULL_REQUEST" != "false" ]] ; then
-    echo "Not triggering Docker Hub for pull requests."
-    exit 0
-fi
-
-if [[ -z "$DOCKERHUB_TOKEN" ]] ; then
-    echo "No API token for Docker Hub, add to repository settings."
-    exit 1
-fi
-
-if [[ -n "$COVERAGE" && "$COVERAGE" != "0" ]] ; then
-    echo "Not triggering Docker Hub for code coverage build."
-    exit 0
-fi
-
-## Should check for tag names that indicate release candidates rather
-## than release names, and then skip those.
-## However, this is already taken care of by the regular expression
-## for whitelisting branches.
-
-if [[ -n "$TRAVIS_TAG" && "$TRAVIS_TAG" != "false" ]] ; then
-    # if we are building a whitelisted tag, we trigger the stable image
-    echo "Triggering rebuild of Docker image bioperl/bioperl:stable"
-    curl -H "Content-Type: application/json" \
-         --data '{"docker_tag": "stable"}' \
-         -X POST $dockerapi/$DOCKERHUB_TOKEN/
-elif [[ "$TRAVIS_BRANCH" != "master" ]] ; then
-    # if someone were to create a branch that matches the whitelisting
-    # pattern, we skip that here, and only trigger on master
-    echo "Not triggering Docker Hub for branches other than master"
-else
-    # not a pull request, not a tag, and the branch is master
-    echo "Triggering rebuild of Docker image bioperl/bioperl:latest"
-    curl -H "Content-Type: application/json" \
-         --data '{"docker_tag": "latest"}' \
-         -X POST $dockerapi/$DOCKERHUB_TOKEN/
-fi
-- 
2.11.4.GIT