lib/SGN/Schema/Unigene.pm

   1 package SGN::Schema::Unigene;
   2
   3 # Created by DBIx::Class::Schema::Loader
   4 # DO NOT MODIFY THE FIRST PART OF THIS FILE
   5
   6 use strict;
   7 use warnings;
   8
   9 use base 'DBIx::Class::Core';
  10
  11
  12 =head1 NAME
  13
  14 SGN::Schema::Unigene
  15
  16 =cut
  17
  18 __PACKAGE__->table("unigene");
  19
  20 =head1 ACCESSORS
  21
  22 =head2 unigene_id
  23
  24   data_type: 'integer'
  25   is_auto_increment: 1
  26   is_nullable: 0
  27   sequence: 'unigene_unigene_id_seq'
  28
  29 =head2 unigene_build_id
  30
  31   data_type: 'integer'
  32   is_foreign_key: 1
  33   is_nullable: 1
  34
  35 =head2 consensi_id
  36
  37   data_type: 'integer'
  38   is_foreign_key: 1
  39   is_nullable: 1
  40
  41 =head2 cluster_no
  42
  43   data_type: 'bigint'
  44   is_nullable: 1
  45
  46 =head2 contig_no
  47
  48   data_type: 'bigint'
  49   is_nullable: 1
  50
  51 =head2 nr_members
  52
  53   data_type: 'bigint'
  54   is_nullable: 1
  55
  56 =head2 database_name
  57
  58   data_type: 'text'
  59   default_value: 'SGN'
  60   is_nullable: 0
  61   original: {data_type => "varchar"}
  62
  63 =head2 sequence_name
  64
  65   data_type: 'bigint'
  66   is_nullable: 0
  67
  68 =cut
  69
  70 __PACKAGE__->add_columns(
  71   "unigene_id",
  72   {
  73     data_type         => "integer",
  74     is_auto_increment => 1,
  75     is_nullable       => 0,
  76     sequence          => "unigene_unigene_id_seq",
  77   },
  78   "unigene_build_id",
  79   { data_type => "integer", is_foreign_key => 1, is_nullable => 1 },
  80   "consensi_id",
  81   { data_type => "integer", is_foreign_key => 1, is_nullable => 1 },
  82   "cluster_no",
  83   { data_type => "bigint", is_nullable => 1 },
  84   "contig_no",
  85   { data_type => "bigint", is_nullable => 1 },
  86   "nr_members",
  87   { data_type => "bigint", is_nullable => 1 },
  88   "database_name",
  89   {
  90     data_type     => "text",
  91     default_value => "SGN",
  92     is_nullable   => 0,
  93     original      => { data_type => "varchar" },
  94   },
  95   "sequence_name",
  96   { data_type => "bigint", is_nullable => 0 },
  97 );
  98 __PACKAGE__->set_primary_key("unigene_id");
  99
 100 =head1 RELATIONS
 101
 102 =head2 blast_annotations
 103
 104 Type: has_many
 105
 106 Related object: L<SGN::Schema::BlastAnnotation>
 107
 108 =cut
 109
 110 __PACKAGE__->has_many(
 111   "blast_annotations",
 112   "SGN::Schema::BlastAnnotation",
 113   { "foreign.apply_id" => "self.unigene_id" },
 114   { cascade_copy => 0, cascade_delete => 0 },
 115 );
 116
 117 =head2 cds
 118
 119 Type: has_many
 120
 121 Related object: L<SGN::Schema::Cd>
 122
 123 =cut
 124
 125 __PACKAGE__->has_many(
 126   "cds",
 127   "SGN::Schema::Cd",
 128   { "foreign.unigene_id" => "self.unigene_id" },
 129   { cascade_copy => 0, cascade_delete => 0 },
 130 );
 131
 132 =head2 primer_unigene_matches
 133
 134 Type: has_many
 135
 136 Related object: L<SGN::Schema::PrimerUnigeneMatch>
 137
 138 =cut
 139
 140 __PACKAGE__->has_many(
 141   "primer_unigene_matches",
 142   "SGN::Schema::PrimerUnigeneMatch",
 143   { "foreign.unigene_id" => "self.unigene_id" },
 144   { cascade_copy => 0, cascade_delete => 0 },
 145 );
 146
 147 =head2 rflp_unigene_associations
 148
 149 Type: has_many
 150
 151 Related object: L<SGN::Schema::RflpUnigeneAssociation>
 152
 153 =cut
 154
 155 __PACKAGE__->has_many(
 156   "rflp_unigene_associations",
 157   "SGN::Schema::RflpUnigeneAssociation",
 158   { "foreign.unigene_id" => "self.unigene_id" },
 159   { cascade_copy => 0, cascade_delete => 0 },
 160 );
 161
 162 =head2 ssr_primer_unigenes_matches
 163
 164 Type: has_many
 165
 166 Related object: L<SGN::Schema::SsrPrimerUnigeneMatches>
 167
 168 =cut
 169
 170 __PACKAGE__->has_many(
 171   "ssr_primer_unigenes_matches",
 172   "SGN::Schema::SsrPrimerUnigeneMatches",
 173   { "foreign.unigene_id" => "self.unigene_id" },
 174   { cascade_copy => 0, cascade_delete => 0 },
 175 );
 176
 177 =head2 consensi
 178
 179 Type: belongs_to
 180
 181 Related object: L<SGN::Schema::UnigeneConsensi>
 182
 183 =cut
 184
 185 __PACKAGE__->belongs_to(
 186   "consensi",
 187   "SGN::Schema::UnigeneConsensi",
 188   { consensi_id => "consensi_id" },
 189   {
 190     is_deferrable => 1,
 191     join_type     => "LEFT",
 192     on_delete     => "CASCADE",
 193     on_update     => "CASCADE",
 194   },
 195 );
 196
 197 =head2 unigene_build
 198
 199 Type: belongs_to
 200
 201 Related object: L<SGN::Schema::UnigeneBuild>
 202
 203 =cut
 204
 205 __PACKAGE__->belongs_to(
 206   "unigene_build",
 207   "SGN::Schema::UnigeneBuild",
 208   { unigene_build_id => "unigene_build_id" },
 209   {
 210     is_deferrable => 1,
 211     join_type     => "LEFT",
 212     on_delete     => "CASCADE",
 213     on_update     => "CASCADE",
 214   },
 215 );
 216
 217 =head2 unigene_members
 218
 219 Type: has_many
 220
 221 Related object: L<SGN::Schema::UnigeneMember>
 222
 223 =cut
 224
 225 __PACKAGE__->has_many(
 226   "unigene_members",
 227   "SGN::Schema::UnigeneMember",
 228   { "foreign.unigene_id" => "self.unigene_id" },
 229   { cascade_copy => 0, cascade_delete => 0 },
 230 );
 231
 232
 233 # Created by DBIx::Class::Schema::Loader v0.07002 @ 2012-03-03 12:35:39
 234 # DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:HYSA+SrdRkUswvQeCSfweQ
 235
 236 use Carp ();
 237
 238 sub seq {
 239     my ($self) = @_;
 240
 241     if( $self->nr_members > 1 ) {
 242         return $self->consensi->seq;
 243     } elsif( $self->nr_members == 1 ) {
 244         return $self->unigene_members->single->est->hqi_seq;
 245     } else {
 246         Carp::confess( 'unigene SGN-U'.$self->unigene_id.' has invalid nr_members ('.$self->nr_members.')' );
 247     }
 248 }
 249
 250
 251 # You can replace this text with custom content, and it will be preserved on regeneration
 252 1;