From dc12f018e6f81cb7c04258479c9b491cb8c794c4 Mon Sep 17 00:00:00 2001
From: Lukas Mueller <lam87@cornell.edu>
Date: Thu, 10 Nov 2016 14:03:20 -0500
Subject: [PATCH] Add information that CXGN::BlastDB and
 bin/bdb_update_blast_dbs.pl are deprecated and have been moved to the sgn/
 repo as CXGN::Blast and bin/bdb_update_blast_dbs.pl.

---
 bin/bdb_update_blast_dbs.pl | 10 ++++++++++
 lib/CXGN/BlastDB.pm         |  4 ++++
 2 files changed, 14 insertions(+)

diff --git a/bin/bdb_update_blast_dbs.pl b/bin/bdb_update_blast_dbs.pl
index 606f530..4e568bc 100755
--- a/bin/bdb_update_blast_dbs.pl
+++ b/bin/bdb_update_blast_dbs.pl
@@ -1,4 +1,10 @@
 #!/usr/bin/env perl
+
+# NOTE: This script is deprecated. 
+# The current version has bin moved to the sgn/ repo
+# as bin/bdb_update_blast_dbs.pl
+
+
 use strict;
 use warnings;
 use English;
@@ -24,6 +30,10 @@ sub usage {
   die <<EOU;
 $message
 Usage:
+
+    Do not use this script. It is deprecated.
+    Use cxgn/sgn/bin/bdb_update_blast_dbs.pl instead.
+
   $FindBin::Script [ options ] -d <path>
 
   Go over all the BLAST databases we keep in stock and update them if
diff --git a/lib/CXGN/BlastDB.pm b/lib/CXGN/BlastDB.pm
index e0ef416..490f5df 100644
--- a/lib/CXGN/BlastDB.pm
+++ b/lib/CXGN/BlastDB.pm
@@ -4,6 +4,10 @@ package CXGN::BlastDB;
 
 CXGN::BlastDB - a BLAST database that we keep in stock and updated.
 
+NOTE!!! This object is deprecated and used only in conjunction with 
+cgi-bin scripts. An equivalent object based on DBIx::Class and Moose
+can be found in the sgn/ repo, called CXGN::Blast.
+
 =head1 SYNOPSIS
 
   ### SIMPLE MECHANICS
-- 
2.11.4.GIT