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2018-04-11	Lukas Mueller	fix conflict.	commit \| commitdiff \| tree
2018-04-10	Lukas Mueller	changes to slurm implementation.	commit \| commitdiff \| tree
2018-02-09	Lukas Mueller	delete old un-used objects from tools run.	commit \| commitdiff \| tree
2018-02-09	Lukas Mueller	make CXGN Tools run.t tests pass; work in progress.	commit \| commitdiff \| tree
2018-02-04	Lukas Mueller	adapt Torque backend to new CXGN::Tools::Run object.	commit \| commitdiff \| tree
2018-02-04	Lukas Mueller	remove deprecated use of isa; do not load try to a...	commit \| commitdiff \| tree
2017-12-23	Lukas Mueller	moosify Run.pm; refactor slurm as a Moose plugin; remove...	commit \| commitdiff \| tree
2017-12-07	Lukas Mueller	move RunModified to Run	commit \| commitdiff \| tree
2017-12-07	Lukas Mueller	merge conflicts in Slurm.pm	commit \| commitdiff \| tree
2017-12-07	Lukas Mueller	recover lost (and slightly modified) Slurm.pm object.	commit \| commitdiff \| tree
2017-12-05	Lukas Mueller	modify stock object such that parents are not duplicated...	commit \| commitdiff \| tree
2017-12-05	Lukas Mueller	read_commented_file should not fail if file does not...	commit \| commitdiff \| tree
2016-11-10	Lukas Mueller	Add information that CXGN::BlastDB and bin/bdb_update_blast_...	commit \| commitdiff \| tree
2016-05-12	Lukas Mueller	code clean up and add tests.	commit \| commitdiff \| tree
2016-05-12	Lukas Mueller	fix conflicts from merge with master.	commit \| commitdiff \| tree
2016-05-11	Lukas Mueller	factor out two objects for torque and slurm respectively.	commit \| commitdiff \| tree
2016-04-30	Lukas Mueller	adapt CXGN::Tools::Run for the new slurm-torque compatibilit...	commit \| commitdiff \| tree
2016-04-11	Lukas Mueller	start to disentangle this complex object using a plugin...	commit \| commitdiff \| tree
2015-11-29	Lukas Mueller	remove unsupported usage of UNIVERSAL::isa	commit \| commitdiff \| tree
2015-11-02	Lukas Mueller	fix conflict in CXGN::Chado::Stock.	commit \| commitdiff \| tree
2015-11-02	Lukas Mueller	implement retrieval of pedigree based on Jeremys Bio...	commit \| commitdiff \| tree
2015-10-07	Lukas Mueller	fix counts and rank max.	commit \| commitdiff \| tree
2015-10-06	Lukas Mueller	add deletion option for merge function.	commit \| commitdiff \| tree
2015-10-05	Lukas Mueller	tweaking return data for pedigree.	commit \| commitdiff \| tree
2015-10-05	Lukas Mueller	Merge branch 'master' into topic/parent_string	commit \| commitdiff \| tree
2015-10-05	Lukas Mueller	add more STDERR output for merge function.	commit \| commitdiff \| tree
2015-09-22	Lukas Mueller	tweak experiment relationship transfer.	commit \| commitdiff \| tree
2015-08-25	Lukas Mueller	add functionality to get a pedigree string from the...	commit \| commitdiff \| tree
2015-07-14	Lukas Mueller	add another missing group by parameter.	commit \| commitdiff \| tree
2015-07-14	Lukas Mueller	add missing group by field.	commit \| commitdiff \| tree
2015-07-14	Lukas Mueller	add two functions, get_trials, and get_stock_list,...	commit \| commitdiff \| tree
2015-02-26	Lukas Mueller	add DBIx::Class definition files for the people database.	commit \| commitdiff \| tree
2015-02-18	Lukas Mueller	also allow the /tmp dir, but emit a warning that this...	commit \| commitdiff \| tree
2014-04-09	Lukas Mueller	also allow colons in Marker names.	commit \| commitdiff \| tree
2013-12-18	Lukas Mueller	remove mod_perl limitation. Its not true.	commit \| commitdiff \| tree
2013-11-07	Lukas Mueller	tweak return value in wantarray context.	commit \| commitdiff \| tree
2013-11-07	Lukas Mueller	fix typos and get it to compile (argh)	commit \| commitdiff \| tree
2013-11-07	Lukas Mueller	modify the new_by_name function such that it returns...	commit \| commitdiff \| tree
2013-07-14	Lukas Mueller	adding a linking table between blast_db and blast_db_group...	commit \| commitdiff \| tree
2013-06-15	Lukas Mueller	update defaults.	commit \| commitdiff \| tree
2013-06-14	Lukas Mueller	construct url with ampersand as separators.	commit \| commitdiff \| tree
2013-05-23	Lukas Mueller	change rules for cluster accessible dirs.	commit \| commitdiff \| tree
2013-03-29	Lukas Mueller	store org info.	commit \| commitdiff \| tree
2013-03-29	Lukas Mueller	move accessor for organization to Login object.	commit \| commitdiff \| tree
2013-03-26	Lukas Mueller	check if row_label is defined, dont expect true value.	commit \| commitdiff \| tree
2013-03-26	Lukas Mueller	make linkage group name checking less stringent.	commit \| commitdiff \| tree
2012-11-07	Lukas Mueller	make exception for Solyc IDs as marker names.	commit \| commitdiff \| tree
2012-06-11	Lukas Mueller	relax linkage group naming.	commit \| commitdiff \| tree
2012-05-07	Lukas Mueller	merge files.	commit \| commitdiff \| tree
2012-05-07	Lukas Mueller	add dependency back for CXGN::DB::Object, because subclasses...	commit \| commitdiff \| tree
2012-02-10	mueller	minor edit in POD.	commit \| commitdiff \| tree
2012-02-10	mueller	return correct image_id in process_image.	commit \| commitdiff \| tree
2012-01-23	mueller	make get_organism_prop function not crash if there...	commit \| commitdiff \| tree
2011-12-26	mueller	fix marker-sequence relationship.	commit \| commitdiff \| tree
2011-12-26	mueller	add option format (for gff3 output or text)	commit \| commitdiff \| tree
2011-11-14	mueller	change has_avail_genome function to query organismprop...	commit \| commitdiff \| tree
2011-10-05	mueller	Rewiring associated PCR sequences through the pcr_experiment...	commit \| commitdiff \| tree
2011-09-01	mueller	fixing typo in SQL	commit \| commitdiff \| tree
2011-09-01	mueller	Adding support for images in the organism object.	commit \| commitdiff \| tree
2011-05-13	Lukas Mueller	fixing an sql query causing problems in the map loading...	commit \| commitdiff \| tree
2011-05-06	mueller	changing the way the dbh is propagated to the schema...	commit \| commitdiff \| tree
2011-05-06	mueller	correcting accidentally duplicated subroutine name.	commit \| commitdiff \| tree
2011-04-08	mueller	fixing the test_clean_marker_name.t test.	commit \| commitdiff \| tree
2011-04-08	mueller	removing useless STDERR output.	commit \| commitdiff \| tree
2011-04-08	mueller	modifying Experiment to link to stock instead of individual.	commit \| commitdiff \| tree
2011-04-08	mueller	changing over to stock tables (from accession)	commit \| commitdiff \| tree
2011-02-27	mueller	extending the marker location to markers with ranges...	commit \| commitdiff \| tree
2011-02-24	mueller	adding support for range markers such as used for qtls.	commit \| commitdiff \| tree
2010-12-27	mueller	fixing a problem with empty/duplicated roles upon account...	commit \| commitdiff \| tree
2010-12-27	mueller	fixing length calculation	commit \| commitdiff \| tree
2010-11-30	mueller	removing any role associations of the person before...	commit \| commitdiff \| tree
2010-11-08	mueller	adding roles to Person.pm and adding tests for these...	commit \| commitdiff \| tree
2010-10-29	mueller	merging with master to pull in some new dependencies	commit \| commitdiff \| tree
2010-10-26	mueller	making the data dirs relative to the ../t directory	commit \| commitdiff \| tree
2010-10-26	mueller	removing images after test	commit \| commitdiff \| tree
2010-10-25	mueller	trying to catch an error condition with some incomplete...	commit \| commitdiff \| tree
2010-10-25	mueller	adding more test data files	commit \| commitdiff \| tree
2010-10-22	mueller	fixing a bug affecting the second download step.	commit \| commitdiff \| tree
2010-10-22	mueller	fix for getting insitu experiment to work	commit \| commitdiff \| tree
2010-10-22	mueller	fixing the original filename path	commit \| commitdiff \| tree
2010-10-22	mueller	refactoring of CXGN::Image, adding a test	commit \| commitdiff \| tree
2010-10-21	mueller	removed a dependency on CXGN::Image.	commit \| commitdiff \| tree
2010-10-18	mueller	a class to extract sequences from the genome	commit \| commitdiff \| tree
2010-10-07	mueller	now makes chr-specific ids	commit \| commitdiff \| tree
2010-10-07	mueller	adding some POD and fixing the minimum length reported bug	commit \| commitdiff \| tree
2010-10-07	mueller	a script implemented as a MooseX::Runnable script to...	commit \| commitdiff \| tree
2010-07-06	mueller	adding better test cleanup	commit \| commitdiff \| tree
2010-07-06	mueller	silencing the web image cache class (too much noise...	commit \| commitdiff \| tree
2010-07-06	mueller	a minimally working test for the web image cache class.	commit \| commitdiff \| tree
2010-06-23	mueller	adding more marker types...	commit \| commitdiff \| tree
2010-05-11	Lukas Mueller	added more POD.	commit \| commitdiff \| tree
2010-05-11	Lukas Mueller	forgot to adapt the POD to the new parameter in the...	commit \| commitdiff \| tree
2010-05-10	Lukas Mueller	Removing an invocation of CXGN::Page in a class	commit \| commitdiff \| tree
2010-05-03	Lukas Mueller	manually perltidied and added some more sanely name...	commit \| commitdiff \| tree
2010-04-02	Lukas Mueller	Tamed POD. Many functions still have no POD...	commit \| commitdiff \| tree
2010-04-01	Lukas Mueller	More taming of the POD.	commit \| commitdiff \| tree
2010-04-01	Lukas Mueller	Added some POD: A usage and a description section.	commit \| commitdiff \| tree
2010-03-08	Lukas Mueller	removed parsing of sgn marker names. closes #116. Other...	commit \| commitdiff \| tree
2010-03-03	Lukas Mueller	removed marker identification from the test. Markers...	commit \| commitdiff \| tree
2010-03-03	Lukas Mueller	moving the Cview test directories	commit \| commitdiff \| tree
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