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2018-08-24	Naama Menda	Merge pull request #22 from solgenomics/topic/fix_image_file...	commit \| commitdiff \| tree
2018-08-16	Naama Menda	Merge pull request #20 from solgenomics/topic/image_order	commit \| commitdiff \| tree
2018-08-16	Naama Menda	Update Image.pm	commit \| commitdiff \| tree
2018-01-26	Naama Menda	Merge pull request #11 from solgenomics/topic/fix_feature_fetch	commit \| commitdiff \| tree
2018-01-19	Naama Menda	Merge pull request #10 from solgenomics/topic/fix_feature_fetch	commit \| commitdiff \| tree
2016-02-09	Naama Menda	Merge pull request #8 from solgenomics/topic/system_cvterms	commit \| commitdiff \| tree
2015-06-17	Naama Menda	fix error in query due to organism_id column in sgn...	commit \| commitdiff \| tree
2015-05-20	Naama Menda	store pub type cvterm if does not exist in database	commit \| commitdiff \| tree
2015-05-13	Naama Menda	parse DOI from the pubmed XML. To be used for banner...	commit \| commitdiff \| tree
2012-12-18	Naama Menda	option for excluding clean_marker_name, useful when...	commit \| commitdiff \| tree
2012-11-29	Naama Menda	dump the parentheses	commit \| commitdiff \| tree
2012-11-29	Naama Menda	adding options for printing mini-ref	commit \| commitdiff \| tree
2012-11-29	Naama Menda	return the pub object	commit \| commitdiff \| tree
2012-03-03	Naama Menda	updated dbic schema objects for sgn schema	commit \| commitdiff \| tree
2012-03-03	Naama Menda	dbix search function takes arguments in a hashref	commit \| commitdiff \| tree
2012-02-06	Naama Menda	count stocks instead of deprecated individuals	commit \| commitdiff \| tree
2011-11-06	Naama Menda	added method for a BCS publication object. This is...	commit \| commitdiff \| tree
2011-10-31	Naama Menda	added accessors for species name	commit \| commitdiff \| tree
2011-08-31	Naama Menda	checking if a schema object was passed to the organism...	commit \| commitdiff \| tree
2011-08-25	Naama Menda	added an option for organism function to return a hash	commit \| commitdiff \| tree
2011-06-11	Naama Menda	added a function for storing stock owners	commit \| commitdiff \| tree
2011-04-18	Naama Menda	adding new metadata row if a row does not exist	commit \| commitdiff \| tree
2011-04-17	Naama Menda	any user with db permissions should be able to call...	commit \| commitdiff \| tree
2011-04-17	Naama Menda	using new stock - phenome linking tables	commit \| commitdiff \| tree
2011-04-06	Naama Menda	cvterm functions for cverm page moved to AJAX controller	commit \| commitdiff \| tree
2011-04-03	Naama Menda	added function for recursive annotated stocks	commit \| commitdiff \| tree
2011-04-02	Naama Menda	function for finding images linked with the stock	commit \| commitdiff \| tree
2011-04-01	Naama Menda	unused code . old phenotype search	commit \| commitdiff \| tree
2011-04-01	Naama Menda	fixed issues with undef stock objects	commit \| commitdiff \| tree
2011-03-24	Naama Menda	alternative constructor returns an empty object if...	commit \| commitdiff \| tree
2011-02-15	Naama Menda	got rid of duplicated function	commit \| commitdiff \| tree
2011-02-01	Naama Menda	removed duplicated function	commit \| commitdiff \| tree
2010-11-20	Naama Menda	added a check for existing pcr_experiment = sequence...	commit \| commitdiff \| tree
2010-11-16	Naama Menda	checking if the stock exists before trying to fetch...	commit \| commitdiff \| tree
2010-11-16	Naama Menda	Merge branch 'master' of github.com:solgenomics/cxgn...	commit \| commitdiff \| tree
2010-11-16	Naama Menda	added test for second-level BCS stock object	commit \| commitdiff \| tree
2010-11-11	Naama Menda	changed cv of sequence types to SO	commit \| commitdiff \| tree
2010-11-11	Naama Menda	fixed search for protocol name	commit \| commitdiff \| tree
2010-11-10	Naama Menda	added Indel to protocol list	commit \| commitdiff \| tree
2010-11-10	Naama Menda	merged master	commit \| commitdiff \| tree
2010-11-09	Naama Menda	added functions to add and access sequences linked...	commit \| commitdiff \| tree
2010-11-06	Naama Menda	removed whitespace	commit \| commitdiff \| tree
2010-11-06	Naama Menda	got rid of warnings comming from undef value in residues...	commit \| commitdiff \| tree
2010-11-04	Naama Menda	added indel and ASPE protocols to Marker subclass	commit \| commitdiff \| tree
2010-11-03	Naama Menda	fixed recursive_children cvterm function, and added...	commit \| commitdiff \| tree
2010-11-03	Naama Menda	fixed get-children method to fetch only children of...	commit \| commitdiff \| tree
2010-11-01	Naama Menda	fixed recursive parents query. This was not working...	commit \| commitdiff \| tree
2010-11-01	Naama Menda	removing the pathdistance filtering was a bad idea...	commit \| commitdiff \| tree
2010-11-01	Naama Menda	this should be the right query for recursive children	commit \| commitdiff \| tree
2010-10-28	Naama Menda	get_recursive_loci should return now loci with direct...	commit \| commitdiff \| tree
2010-10-28	Naama Menda	setting in dbh autocommit =1 , and checking for errors...	commit \| commitdiff \| tree
2010-10-23	Naama Menda	added a trial option to dbpatch	commit \| commitdiff \| tree
2010-10-13	Naama Menda	fixed bug in returning feature_id after inserting a...	commit \| commitdiff \| tree
2010-10-11	Naama Menda	added helper functions for BCS organism and cvterm	commit \| commitdiff \| tree
2010-10-11	Naama Menda	added accessors to 2nd level chado Stock object	commit \| commitdiff \| tree
2010-10-05	Naama Menda	fixed checking of previous db patches prerequisite	commit \| commitdiff \| tree
2010-10-04	Naama Menda	cloning dbh , since the DBIC dbh gets disconnected...	commit \| commitdiff \| tree
2010-10-03	Naama Menda	added recursive_children and recursive_parents methods...	commit \| commitdiff \| tree
2010-10-03	Naama Menda	get_children does not need to query cvtermpath, since...	commit \| commitdiff \| tree
2010-09-29	Naama Menda	changed the BCS connection to use DBI, instead of CXGN...	commit \| commitdiff \| tree
2010-09-29	Naama Menda	changed insert query to return feature_id	commit \| commitdiff \| tree
2010-09-29	Naama Menda	added stock obsolete accessor	commit \| commitdiff \| tree
2010-09-29	Naama Menda	fixed get_parents query	commit \| commitdiff \| tree
2010-09-28	Naama Menda	changed get_parents query to use cvtermpath	commit \| commitdiff \| tree
2010-09-28	Naama Menda	changed get_children to use cvtermpath	commit \| commitdiff \| tree
2010-09-28	Naama Menda	added stock obsolete accessor	commit \| commitdiff \| tree
2010-09-23	Naama Menda	added an option to return an error in patch{}	commit \| commitdiff \| tree
2010-09-22	Naama Menda	some POD changes	commit \| commitdiff \| tree
2010-09-21	Naama Menda	removed usage of patch number check in Dbversion, since...	commit \| commitdiff \| tree
2010-09-20	Naama Menda	added a get_obsolete method. Now defaults to f, but...	commit \| commitdiff \| tree
2010-09-20	Naama Menda	removed unnecessary printing to STDOUT	commit \| commitdiff \| tree
2010-09-20	Naama Menda	added MooseX::Runnable and MooseX::Getopt dependencies	commit \| commitdiff \| tree
2010-09-20	Naama Menda	a parent class for writing dbpatches using MooseX:...	commit \| commitdiff \| tree
2010-09-19	Naama Menda	a 2nd level object for BCS Stcok. This is only for...	commit \| commitdiff \| tree
2010-09-17	Naama Menda	changed get_last_insert_id to getting the database...	commit \| commitdiff \| tree
2010-09-17	Naama Menda	removed STDERR printing	commit \| commitdiff \| tree
2010-07-15	Naama Menda	fixed query to work with object id . this is equivalent...	commit \| commitdiff \| tree
2010-07-15	Naama Menda	fixed query for fetching loci and individual annotations...	commit \| commitdiff \| tree
2010-06-14	Naama Menda	fixed CXGN::Chado tests	commit \| commitdiff \| tree
2010-06-14	Naama Menda	fixed CXGN::Chado tests	commit \| commitdiff \| tree
2010-05-29	Naama Menda	Merge branch 'master' of github.com:solgenomics/cxgn...	commit \| commitdiff \| tree
2010-05-29	Naama Menda	bug in the Phenotype module, store function.	commit \| commitdiff \| tree
2010-05-14	Naama Menda	POD typos	commit \| commitdiff \| tree
2010-05-13	Naama Menda	refactored the query for fetching annotated objects...	commit \| commitdiff \| tree
2010-04-22	Naama Menda	added base class to Phylo::Tree	commit \| commitdiff \| tree
2010-04-21	Naama Menda	changed printing of node labels depending on the number...	commit \| commitdiff \| tree
2010-04-19	Naama Menda	printing non-leaf node labels above the node line....	commit \| commitdiff \| tree
2010-04-12	Naama Menda	added an option for printing labels for all tree nodes	commit \| commitdiff \| tree
2010-04-09	Naama Menda	added an option to print the names of non-leaf nodes...	commit \| commitdiff \| tree
2010-04-05	Naama Menda	added a function or fetching all direct children of...	commit \| commitdiff \| tree
2010-04-01	Naama Menda	fixed the pod for add_child. This function does not...	commit \| commitdiff \| tree
2010-03-18	Naama Menda	fixed a bug in Organism module	commit \| commitdiff \| tree
2010-03-11	Naama Menda	removed STDERR statements	commit \| commitdiff \| tree
2010-02-26	Naama Menda	added a check to prevent new_with_common_name from...	commit \| commitdiff \| tree
2010-02-10	Naama Menda	modified bew_with_common_name to get the organism based...	commit \| commitdiff \| tree

Various Modules relating to SGN

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