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Update instructions in containers.rst
2020-11-24
E
rik Lindahl
Make s
u
re frexp(
)
returns correct
f
or argument 0
.
0
commit
|
commitdiff
|
tree
2020-10-19
E
r
i
k
Linda
h
l
New Twitter-based quote
commit
|
commitdiff
|
tree
2020-10-07
Erik Linda
h
l
New re
l
ea
s
e,
n
e
w quot
e
s
!
commit
|
commitdiff
|
tree
2020-09-15
Erik
L
ind
a
hl
Enable
G
MX_GPU=SYCL comp
i
l
e
s
commit
|
commitdiff
|
tree
2020-09-15
Er
i
k Lindahl
Fi
x
mi
n
o
r warnings n
o
ti
c
ed by Intel compilers
commit
|
commitdiff
|
tree
2020-08-20
Erik Lin
d
ah
l
Enable CI tes
t
in
g
o
f
O
penAPI / O
p
e
n
CL
commit
|
commitdiff
|
tree
2020-08-13
Erik Linda
h
l
CMake SYCL & Inte
l
O
penMP
h
andling
commit
|
commitdiff
|
tree
2020-08-04
Erik L
i
ndahl
Simpl
i
fied uniform GPU
selection in CMake
commit
|
commitdiff
|
tree
2020-06-17
E
r
ik
Lindahl
Simpli
f
ied uniform GPU selection in CMake
commit
|
commitdiff
|
tree
2020-06-15
Erik Lindahl
Replace trivalue
o
p
t
ions with pl
a
i
n
boo
l
eans
commit
|
commitdiff
|
tree
2020-06-11
Erik Lindahl
Repla
c
e
trivalue o
p
tions
w
i
th plai
n
booleans
commit
|
commitdiff
|
tree
2020-06-10
Erik L
i
nd
a
hl
R
e
place automatic rdtscp checks with
boolean option
commit
|
commitdiff
|
tree
2020-06-09
Eri
k
L
i
ndahl
Av
o
id usin
g
AUTO settings in CI builds
commit
|
commitdiff
|
tree
2020-06-03
Er
i
k Lin
d
ahl
Remove 'register' stora
g
e clas
s
in clF
F
T
commit
|
commitdiff
|
tree
2020-05-25
Erik Lindahl
F
i
x wa
r
nin
g
s on llvm
1
1 compilers
commit
|
commitdiff
|
tree
2020-01-07
Er
i
k Lindahl
Write TPR bo
d
y
as opa
q
ue XD
R
dat
a
in big-endian
for
m
at
commit
|
commitdiff
|
tree
2020-01-01
E
r
ik Li
n
dahl
Add link to
p
a
p
er expla
i
ning GROMOS twin-range is
s
ue
s
.
commit
|
commitdiff
|
tree
2019-12-29
Erik Lindahl
Wri
t
e
T
PR b
o
dy
a
s
opaque XDR data
i
n big-endian fo
r
ma
t
commit
|
commitdiff
|
tree
2019-11-13
Erik Lind
a
hl
Updated
p
hysical constan
t
s
t
o CODATA 2018
commit
|
commitdiff
|
tree
2019-11-06
Er
i
k Lindahl
W
o
rk aroun
d
b
roken
Appl
e
compilers in
M
ac OS
1
0
.
15
commit
|
commitdiff
|
tree
2019-11-06
Erik Lin
d
ahl
W
o
rk around broken Apple compilers in Mac
O
S
10
.
15
commit
|
commitdiff
|
tree
2019-09-13
Erik Lindah
l
A
dd
r
oun
d
i
ng
corre
c
tion to unsafe s
i
md exp tests too
commit
|
commitdiff
|
tree
2019-09-13
E
r
i
k
L
indahl
Fix
clang
tidy war
n
ings in SIMD code
commit
|
commitdiff
|
tree
2019-09-12
Erik Lindahl
Adjust t
e
st range
a
nd fix singleac
c
u
racy t
e
sts
commit
|
commitdiff
|
tree
2019-09-12
E
ri
k
L
i
ndahl
A
dded SIMD cbrt
and
i
nvcbrt functions
commit
|
commitdiff
|
tree
2019-09-12
Erik
L
i
n
d
ahl
Added
SIMD log2 and pow math fu
n
cti
o
ns
commit
|
commitdiff
|
tree
2019-09-12
Eri
k
Lindahl
Upd
a
te SIMD ma
t
h tests
and
improve accurac
y
commit
|
commitdiff
|
tree
2019-09-03
Erik Lindahl
Fix
CPU d
e
tection and SI
M
D on modern Mac/cmake com
b
os
commit
|
commitdiff
|
tree
2019-08-30
Erik Lindahl
Fix CPU dete
c
tion and SIMD on modern Mac/cmake
c
omb
o
s
commit
|
commitdiff
|
tree
2019-08-29
Erik Lindahl
Some quotes I bumped into last week
commit
|
commitdiff
|
tree
2019-08-23
Erik
L
indahl
Default to AVX2_256 SIMD
for Zen2
commit
|
commitdiff
|
tree
2019-08-20
Er
i
k Lindah
l
Avoid u
s
ing
G
MX_SIM
D
mac
r
o
s
to detect _mm_
p
ause()
commit
|
commitdiff
|
tree
2019-06-09
Erik
Lind
a
h
l
More quotes
commit
|
commitdiff
|
tree
2019-05-16
Erik
L
indahl
A
d
ded more quotes
commit
|
commitdiff
|
tree
2018-08-14
Erik Li
n
dahl
Fi
x
SIMD
anyTrue
bug,
a
n
d add bette
r
u
nit test
commit
|
commitdiff
|
tree
2018-06-06
Erik
Linda
h
l
Use default CMake path
v
ari
a
bles
commit
|
commitdiff
|
tree
2018-06-06
Erik Lin
d
a
h
l
Bump GMX_BUILD_OWN_FFTW
t
o 3
.
3
.
8 to a
v
o
id bugs
commit
|
commitdiff
|
tree
2018-01-10
E
r
ik Lindah
l
Im
p
rov
e
p
d
b2gmx for nonstanda
r
d residue types
commit
|
commitdiff
|
tree
2018-01-10
E
r
ik Lindahl
C
larified gmx rmsf docu
m
en
t
ation
commit
|
commitdiff
|
tree
2018-01-05
Erik Lind
a
hl
T
est
t
hat nvcc/
h
os
t
compile
r
c
o
mbo works
commit
|
commitdiff
|
tree
2018-01-05
E
r
ik Lind
a
hl
Make TNG writin
g
w
o
rk with m
u
lt
i
ple i
d
entical steps
commit
|
commitdiff
|
tree
2018-01-05
E
r
ik
L
indahl
Add AVX
_
51
2
and KNC s
y
mbols to FFTW
S
I
MD test
commit
|
commitdiff
|
tree
2018-01-04
Erik Lindahl
Im
p
r
o
v
e frame time/step ha
n
d
ling in
t
rjconv
commit
|
commitdiff
|
tree
2018-01-04
Erik Linda
h
l
Imple
m
ent changes for CMake polic
y
0068
commit
|
commitdiff
|
tree
2018-01-03
Erik
Lindahl
Fix trjconv for tdum
p
<fr
a
me timestep
commit
|
commitdiff
|
tree
2018-01-03
Erik Lindahl
Fix i
n
d
e
x error i
n
gmx chi
commit
|
commitdiff
|
tree
2018-01-03
Er
i
k Lindahl
Fix
c
om
p
lexity for
large
e
xclusion orders
commit
|
commitdiff
|
tree
2018-01-03
Erik L
i
ndahl
D
o
n't allo
w
mul
t
iple
energy groups
f
or
G
P
U
run
s
commit
|
commitdiff
|
tree
2018-01-03
E
r
ik Lindahl
Remove d
u
p
lications in
GM
X
LIB search pat
h
s
commit
|
commitdiff
|
tree
2018-01-03
Erik L
i
ndahl
Avoid FT
Z
t
r
iggering
simd test f
a
ilures
commit
|
commitdiff
|
tree
2018-01-02
E
r
ik Linda
h
l
Document required position restraint
f
i
les
commit
|
commitdiff
|
tree
2018-01-02
E
r
ik
Lindahl
A
ll
o
w empty li
n
es i
n
hd
b
files
commit
|
commitdiff
|
tree
2018-01-02
Erik Li
n
dahl
Fix OpenCL c
o
mpiles on
M
ac
OS
commit
|
commitdiff
|
tree
2018-01-02
Eri
k
Lindah
l
I
mpro
v
e manual
f
rom
c
omme
n
t
s by G
a
ng Liu
commit
|
commitdiff
|
tree
2018-01-02
Eri
k
Lindahl
Make it expl
i
cit that time
units appl
y
to begi
n
/end
.
.
.
commit
|
commitdiff
|
tree
2018-01-02
Erik L
i
n
d
ahl
Don't
require match
i
ng na
m
es between rtp
and tdb file
s
commit
|
commitdiff
|
tree
2018-01-02
E
r
i
k Linda
h
l
Don't write reference pull group 0 to log
commit
|
commitdiff
|
tree
2018-01-01
Erik Lindahl
Fix
g
mx density fo
r
non-mass calculations
commit
|
commitdiff
|
tree
2018-01-01
Erik Lindahl
Clari
f
y XTC er
r
or
mes
s
age
commit
|
commitdiff
|
tree
2017-12-26
Er
i
k Lind
a
hl
F
ix buil
d
s
on
A
R
M
&
c
l
arify (ARM) GPU suppor
t
commit
|
commitdiff
|
tree
2017-12-19
E
rik Lin
d
ahl
Use reduced d
e
faul
t
tolerance
s
fo
r
tpx comparison
commit
|
commitdiff
|
tree
2017-12-14
Erik Lindahl
Work around
AVX
-
512 issues i
n
gcc-5
.
4
and 7
.
1
commit
|
commitdiff
|
tree
2017-12-14
Erik Li
n
dahl
Fix
PBC error
i
n
g
m
x
_sp
a
tial
commit
|
commitdiff
|
tree
2017-12-12
Erik
Lin
d
a
h
l
Documented power spectrum
t
o
gmx velacc
commit
|
commitdiff
|
tree
2017-12-12
Erik
Lindahl
Require TP
R
file for gmx cl
u
ster
commit
|
commitdiff
|
tree
2017-12-12
E
r
i
k
Lindahl
Disallow ascii formats for gmx trjcat
commit
|
commitdiff
|
tree
2017-12-11
Erik Lindahl
Remove d
u
plicated line
s
from OPLS ffbonded
.
itp
commit
|
commitdiff
|
tree
2017-12-11
Erik Lindahl
Don't warn about NVM
L
clocks that
a
re at max
commit
|
commitdiff
|
tree
2017-12-10
E
rik L
i
ndahl
R
e
vert
"
Disable default-on NVML sup
p
ort
i
n CMake"
commit
|
commitdiff
|
tree
2017-12-07
Erik Lin
d
ahl
Ad
d
ed coo
l
quo
t
e from Viveca's defense
commit
|
commitdiff
|
tree
2017-12-04
E
r
ik Lindahl
F
i
x
c
o
mpila
t
ion issues for AVX-512
commit
|
commitdiff
|
tree
2017-11-28
E
rik Lindahl
Fi
x
AVX-512 SIMD test
for C
commit
|
commitdiff
|
tree
2017-11-28
Erik
Li
n
dahl
Imp
r
ove
status
m
e
s
s
ages for SIMD
c
hecks
commit
|
commitdiff
|
tree
2017-11-27
Erik Li
n
dahl
Test mor
e
AVX
-
51
2
F i
n
structi
o
ns
be
f
o
re e
n
abling suppor
t
commit
|
commitdiff
|
tree
2017-11-24
Erik Lind
a
hl
Detect
A
VX
-
512 FMA
units to
c
hoose best SIM
D
commit
|
commitdiff
|
tree
2017-11-21
E
rik L
i
nda
h
l
Sep
a
rate SIMD
f
lag detection from management
commit
|
commitdiff
|
tree
2017-11-12
Erik Lindahl
Only
i
s
s
u
e FFT warning messages on
c
hange
s
commit
|
commitdiff
|
tree
2017-09-12
E
r
ik Lindahl
Improve a
c
c
uracy
o
f SIMD exp for s
m
all args
commit
|
commitdiff
|
tree
2017-09-04
Eri
k
Lindah
l
Mo
r
e SIMD math argume
n
t
checking, added unsafe options
commit
|
commitdiff
|
tree
2017-08-28
Erik Lindahl
Impr
o
ved S
I
MD test data to use
a
ll bits
commit
|
commitdiff
|
tree
2017-06-26
Erik Lindahl
Fix AR
M
N
E
ON simd debu
g
builds
commit
|
commitdiff
|
tree
2017-06-13
Eri
k
Lindahl
More qu
o
tes
commit
|
commitdiff
|
tree
2017-05-23
Erik Lindahl
Updated cool quotes
commit
|
commitdiff
|
tree
2017-04-17
E
r
ik Lindahl
Fixed AVX-512F compiler fla
g
s
commit
|
commitdiff
|
tree
2017-03-19
Er
i
k Lindahl
Use Ope
n
MP
up t
o
16
t
h
reads with AMD Ryz
e
n
commit
|
commitdiff
|
tree
2017-03-19
Eri
k
Lindahl
1
28-bit AVX2 SIMD for AMD Ryze
n
commit
|
commitdiff
|
tree
2017-03-14
Erik Lin
d
a
hl
Fix
g
cc
c
om
p
i
l
es of AVX-
5
12 SIMD
commit
|
commitdiff
|
tree
2017-02-09
Erik Lindah
l
W
o
rk around false
x
lc-13
.
1
.
5 bug
i
n SIMD test
commit
|
commitdiff
|
tree
2016-10-17
Erik Lindahl
New
c
l
as
s
es
f
o
r spl
i
ne
interpo
l
ation
tables
commit
|
commitdiff
|
tree
2016-09-07
Erik Lindahl
Bum
p
oldest cmak
e
, compiler and C
U
DA versions re
q
uired
commit
|
commitdiff
|
tree
2016-08-05
Eri
k
L
i
ndahl
Fix pr
o
per rela
t
ive tolerance check
i
ng
i
n testuti
l
s
commit
|
commitdiff
|
tree
2016-07-11
Erik
Lindahl
Fix membed with
partial r
e
vert of 29
9
43f
commit
|
commitdiff
|
tree
2016-07-09
Erik Lindahl
Hardwa
r
e detection clea
n
-
up and pre/pos
t
-processing
commit
|
commitdiff
|
tree
2016-07-09
Erik Lin
d
a
h
l
P
r
event fragile use
c
ases
o
f chec
k
point appending
commit
|
commitdiff
|
tree
2016-07-08
Eri
k
L
indahl
Upd
a
te
affinity checking for Intel
c
o
m
pil
e
r
commit
|
commitdiff
|
tree
2016-07-08
Erik
L
inda
h
l
Add
d
et
e
c
t
ion for
A
RMv7
c
y
c
l
e
counter suppor
t
commit
|
commitdiff
|
tree
2016-07-08
Er
i
k
Lindahl
Work ar
o
und compiler issu
e
with r
a
ndom tes
t
commit
|
commitdiff
|
tree
2016-07-07
E
r
ik Lind
a
hl
Reduce
h
wloc &
cpui
d
te
s
t
r
equi
r
ements
commit
|
commitdiff
|
tree
2016-06-08
Er
i
k Lin
d
ahl
Di
s
abl
e
s
tatic
l
i
bcudart on OS
X
commit
|
commitdiff
|
tree
2016-06-04
Erik Linda
h
l
C
h
e
c
k nu
m
be
r
o
f
items read in
mdp statements
commit
|
commitdiff
|
tree
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