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Version 2019.6
2020-02-28
Paul Bauer
V
e
rsion 2019
.
6
commit
|
commitdiff
|
tree
2020-02-05
Berk Hess
Actuall
y
fix PME forces with FE
wit
h
out pe
r
tu
r
bed
q
/LJ
commit
|
commitdiff
|
tree
2019-12-23
Paul Bauer
Prep
a
re for GROMAC
S
2019
.
6
commit
|
commitdiff
|
tree
2019-12-23
Paul Bauer
GROMACS v
e
rsion 2019
.
5
commit
|
commitdiff
|
tree
2019-12-23
Paul Ba
u
e
r
Revert "Fi
x
that tests in
t
ended for m
u
ltiple
ra
n
ks
.
.
.
commit
|
commitdiff
|
tree
2019-12-13
Paul Bauer
Check for us
i
ng corr
e
ct h
w
loc
hea
d
ers and r
u
ntime
commit
|
commitdiff
|
tree
2019-12-06
Chr
i
sti
a
n
Blau
Change arbitrary uni
t
s to c
o
u
nts in RMSD distance distributi
.
.
.
commit
|
commitdiff
|
tree
2019-11-26
Ber
k
He
s
s
Fix issue
s
w
i
t
h
AWH with
p
eri
o
d
i
c p
u
l
ling
commit
|
commitdiff
|
tree
2019-11-25
Chr
i
s
tian Blau
Fix duplicate CONNECT
r
ec
o
r
d
s
i
n pdb files
commit
|
commitdiff
|
tree
2019-10-09
Berk Hess
Increase
spc
m
in
i
m
izatio
n
test tol
e
rance
commit
|
commitdiff
|
tree
2019-10-09
Berk
H
ess
Fi
x
ran
d
om energy
and virial with PME on GPU on a PM
E
.
.
.
commit
|
commitdiff
|
tree
2019-10-02
P
a
ul Bauer
Prepa
r
e for
2
019
.
5
commit
|
commitdiff
|
tree
2019-10-02
Paul Bauer
GROMACS version 2019
.
4
commit
|
commitdiff
|
tree
2019-10-01
Berk
Hess
A
lways
output
corr
e
ct kinetic a
t
last step
commit
|
commitdiff
|
tree
2019-09-02
Berk Hess
Fix incor
r
ect rvdw on GPU
w
it
h
rvdw<rcoulomb
commit
|
commitdiff
|
tree
2019-08-23
Erik
L
i
ndahl
Default to AVX2_256 SIMD
for Zen
2
commit
|
commitdiff
|
tree
2019-08-06
Mark Abra
h
a
m
Fix for MSVC
+
C
U
DA
commit
|
commitdiff
|
tree
2019-08-02
Berk Hess
M
ade gmx disre
work
with non
-
consecutivel
y
labe
l
ed
.
.
.
commit
|
commitdiff
|
tree
2019-07-09
P
a
ul Bauer
F
ix
link
to acp
y
pe repository
commit
|
commitdiff
|
tree
2019-07-08
Pau
l
B
auer
Fix
issues found by clang-tidy 7
commit
|
commitdiff
|
tree
2019-07-02
Pau
l
B
a
uer
Fix b
u
g in
gmx xpm2ps
commit
|
commitdiff
|
tree
2019-06-14
Paul Bauer
Prepare for
2
01
9
.
4
commit
|
commitdiff
|
tree
2019-06-14
Paul
Bauer
V
e
rsion
2
0
1
9
.
3
commit
|
commitdiff
|
tree
2019-06-14
P
a
ul Bauer
M
erge branc
h
release
-
2018 into rel
e
ase-2019
commit
|
commitdiff
|
tree
2019-06-12
Paul Bauer
Fix
qsort
not bein
g
d
e
fined o
n
A
p
ple Clang
commit
|
commitdiff
|
tree
2019-06-11
Pau
l
Baue
r
E
x
tend informat
i
on for gmxcpp
s
ynta
x
err
o
r
.
commit
|
commitdiff
|
tree
2019-05-29
Paul Bauer
Version 2018
.
7
commit
|
commitdiff
|
tree
2019-05-27
Be
r
k
H
ess
Work
a
round
gcc 7 av
x
512 bug
commit
|
commitdiff
|
tree
2019-05-27
Paul Ba
u
er
Add more info for
wrong line endings
commit
|
commitdiff
|
tree
2019-05-24
P
aul
B
auer
Fix membran
e
embedding
commit
|
commitdiff
|
tree
2019-05-23
M
a
r
k Abrah
a
m
Revert "Fixe
d
dvdlambda for SHAKE
+ FE"
commit
|
commitdiff
|
tree
2019-05-23
Pa
u
l Bauer
Add check
for a
l
locating too
many interactio
n
s
commit
|
commitdiff
|
tree
2019-05-13
Paul Baue
r
P
r
epar
e
for 2018
.
7
commit
|
commitdiff
|
tree
2019-05-02
Paul Ba
u
er
Fix FPE in do_steep
commit
|
commitdiff
|
tree
2019-04-16
Paul Bauer
Prep
a
r
e for vers
i
on 2019
.
3
commit
|
commitdiff
|
tree
2019-04-16
B
erk Hes
s
Mak
e
mdrun -nsteps work again
.
commit
|
commitdiff
|
tree
2019-04-15
B
e
rk Hess
Update 2019 release not
e
s fo
r
issue 2845
commit
|
commitdiff
|
tree
2019-04-15
Szilárd Páll
Add u
s
er guide note on
AVX512 th
r
ottle in
G
PU r
u
ns
commit
|
commitdiff
|
tree
2019-04-15
Berk H
e
s
s
Di
s
allow pu
l
l geomet
r
y
direction-peri
o
dic wi
t
h
A
WH
commit
|
commitdiff
|
tree
2019-04-09
M
a
r
k
A
braham
F
ix typo i
n
AVX512 dete
c
tion code
commit
|
commitdiff
|
tree
2019-03-12
Paul Bauer
Fi
x
formattin
g
error in user guide
r
eference
commit
|
commitdiff
|
tree
2019-02-20
Paul
B
auer
Version 2018
.
6
commit
|
commitdiff
|
tree
2019-02-19
Paul B
a
uer
P
r
epar
e
for 2019
.
2
commit
|
commitdiff
|
tree
2019-02-19
S
zilárd
Páll
Disable instr
u
cti
o
n fusion on
P
ower8
commit
|
commitdiff
|
tree
2019-02-15
Paul Bauer
Ver
s
ion 201
9
.
1
commit
|
commitdiff
|
tree
2019-02-15
Mark Abraham
Improved diagn
o
stics when PM
E
cannot run on GPUs
commit
|
commitdiff
|
tree
2019-02-15
Berk Hess
Fix mass
D
e
l
ta
H
d
o
uble counting
commit
|
commitdiff
|
tree
2019-02-15
Szilá
r
d Páll
Extend
p
erformance considerations
o
n
bonded of
f
load
commit
|
commitdiff
|
tree
2019-01-25
Roland Sch
u
lz
Work
-
around for ICC
b
u
g
i
n
simd-tes
t
s
commit
|
commitdiff
|
tree
2019-01-23
P
aul Bauer
C
hange gcov to run on bs-mi
c
commit
|
commitdiff
|
tree
2019-01-22
Paul Baue
r
Prepare
for
2018
.
6
commit
|
commitdiff
|
tree
2019-01-22
P
a
ul Bauer
Vers
i
o
n 2018
.
5
commit
|
commitdiff
|
tree
2019-01-21
Mar
k
Ab
r
aham
Fix trjco
n
v -
n
dec
commit
|
commitdiff
|
tree
2019-01-16
Paul Bauer
Fix memory lea
k
in s
o
lv
a
te
commit
|
commitdiff
|
tree
2019-01-08
Ma
r
k A
b
raham
Fix trjc
o
nv
-ndec
commit
|
commitdiff
|
tree
2019-01-08
Mark Abraham
Sim
p
lify reporting of GPU sele
c
tion
commit
|
commitdiff
|
tree
2019-01-07
Pa
u
l
Bauer
Remove DOI entries when
n
o
t
on release patch
commit
|
commitdiff
|
tree
2019-01-02
Szilárd Páll
D
o
not wh
i
t
e
list the u
s
e
o
f Open
C
L
1
.
1 API
commit
|
commitdiff
|
tree
2018-12-31
Paul Bauer
Prepare
for 2019
.
1
commit
|
commitdiff
|
tree
2018-12-31
P
a
u
l
Bauer
G
R
OMACS 2019 re
l
e
ase
commit
|
commitdiff
|
tree
2018-12-31
Kevin Bo
y
d
Only
r
eport in
t
ra-sim communi
c
ation w
i
th multiple ranks
commit
|
commitdiff
|
tree
2018-12-31
Pa
u
l Baue
r
Merge branch rele
a
se-2018 into release-2019
commit
|
commitdiff
|
tree
2018-12-22
Szilárd Pá
l
l
Runtime check o
f
d
e
vi
c
e
Ope
n
CL suppo
r
t
commit
|
commitdiff
|
tree
2018-12-21
Szilárd P
á
ll
M
ak
e
jenkins own-fftw verify use local tarball
commit
|
commitdiff
|
tree
2018-12-19
Jiannan Liu
Missing fa
c
tor of 2 in
cos-acceleratio
n
commit
|
commitdiff
|
tree
2018-12-17
Pau
l
Bauer
Copy pa
r
a
l
le
l
isation
i
nfo
fr
o
m
ol
d
webpage
commit
|
commitdiff
|
tree
2018-12-17
P
a
ul Bau
e
r
M
e
rge branch release
-
2
01
8
into release
-
2
019
commit
|
commitdiff
|
tree
2018-12-14
Berk Hess
Fix LINCS triangle cons
t
raining wit
h
Open
M
P
commit
|
commitdiff
|
tree
2018-12-14
Paul Bauer
GR
O
MA
C
S 20
1
9
R
elease candi
d
ate
commit
|
commitdiff
|
tree
2018-12-14
Berk Hess
Fixed nullptr derefence in L
I
NCS
error
commit
|
commitdiff
|
tree
2018-12-14
Ma
g
nus Lundborg
Set
HAVE_LMFIT pro
p
erly
commit
|
commitdiff
|
tree
2018-12-14
Berk Hess
Fix LINCS triangle c
o
nstraining
wit
h
Ope
n
MP
commit
|
commitdiff
|
tree
2018-12-14
S
z
i
lárd P
á
ll
E
n
able
A
RMPL
i
n t
h
e armclang bu
i
ld
commit
|
commitdiff
|
tree
2018-12-13
Roland Sch
u
lz
Remove un
u
s
e
d
MdrunComparisonFixtur
e
commit
|
commitdiff
|
tree
2018-12-13
Szil
á
rd
P
áll
Document the
F
P
e
xception
i
n cuFFT 7
.
0
commit
|
commitdiff
|
tree
2018-12-10
Paul Bauer
D
i
sable gmxapi by default
commit
|
commitdiff
|
tree
2018-12-05
Berk H
e
ss
Add update grou
p
s to paralle
l
izati
o
n docs
commit
|
commitdiff
|
tree
2018-12-03
Mark Abrah
a
m
Move res
p
onsibilit
y
for
PME reduction to its module
commit
|
commitdiff
|
tree
2018-11-30
Pa
u
l
B
a
uer
Rec
r
eate flowchart figure
commit
|
commitdiff
|
tree
2018-11-29
Paul Bauer
Fix ener
g
y history reading
commit
|
commitdiff
|
tree
2018-11-29
Paul Bauer
Ma
k
e
Imagemagick availabi
l
ity more visible
commit
|
commitdiff
|
tree
2018-11-22
Pau
l
Bauer
Prepare for 2019 r
e
lease candidate
commit
|
commitdiff
|
tree
2018-11-22
Pa
u
l Bauer
GROMACS 201
9
th
i
rd beta release
commit
|
commitdiff
|
tree
2018-11-21
Pa
u
l
Bauer
Merge branch re
l
ease-
2
018 i
n
to
r
elea
s
e-2019
commit
|
commitdiff
|
tree
2018-11-16
M
.
Eric
I
r
rg
a
ng
Expa
n
d gmxapi testing to inclu
d
e
t
h
read-MPI
.
commit
|
commitdiff
|
tree
2018-11-14
Mark Abraham
More
warning s
u
ppressions
for
Q
MM
M
code
commit
|
commitdiff
|
tree
2018-11-14
M
.
E
r
ic Irrgang
N
ot
e
G
M
XAPI CMake
v
ariab
l
es
a
n
d build targets
.
commit
|
commitdiff
|
tree
2018-11-12
Paul Bauer
Upda
t
e
to prepare for 2018
.
5
po
i
nt release
commit
|
commitdiff
|
tree
2018-11-12
Paul B
a
uer
Version 2
0
18
.
4
commit
|
commitdiff
|
tree
2018-11-09
Mark Abr
a
h
a
m
Disabled FPE chec
k
i
n
g
for non-rele
a
se bu
i
l
d
s
commit
|
commitdiff
|
tree
2018-11-06
Paul Bau
e
r
Prep
a
re for beta3
commit
|
commitdiff
|
tree
2018-11-06
Paul Bauer
GROMACS 2019 seco
n
d beta relea
s
e
commit
|
commitdiff
|
tree
2018-11-05
M
ark Abr
a
ham
Remove
s
our
c
e
f
ile wit
h
no content
commit
|
commitdiff
|
tree
2018-11-05
Paul Bauer
Fix non
a
sc
i
i cha
r
acters
i
n
m
a
nual refe
r
ences
commit
|
commitdiff
|
tree
2018-11-05
Pau
l
Bauer
F
i
x forma
t
ting iss
u
e
commit
|
commitdiff
|
tree
2018-11-02
Ma
r
k Ab
r
aha
m
Q
u
iet unu
s
ed variable wa
r
nings
commit
|
commitdiff
|
tree
2018-11-01
M
.
Eric Irrgang
Fully defi
n
e symb
o
ls in restraintpot
e
ntia
l
.
h
commit
|
commitdiff
|
tree
2018-10-30
M
a
r
k Ab
r
aham
Updates to docs for Ope
n
CL suppo
r
t
commit
|
commitdiff
|
tree
2018-10-26
Paul Bauer
F
ix link formatting
in developer manual
commit
|
commitdiff
|
tree
2018-10-26
P
a
ul Bauer
U
p
date user document
a
tion overview
commit
|
commitdiff
|
tree
next