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2016-09-12	Teemu Murtola	Fix various memory leaks	commit \| commitdiff \| tree
2016-09-07	Teemu Murtola	Clean up CTest test management	commit \| commitdiff \| tree
2016-08-30	Teemu Murtola	Basic support for transforming KeyValueTrees	commit \| commitdiff \| tree
2016-08-27	Teemu Murtola	Support KeyValueTree objects in refdata	commit \| commitdiff \| tree
2016-08-18	Teemu Murtola	Check for unused refdata values	commit \| commitdiff \| tree
2016-08-18	Teemu Murtola	Generic structured key-value tree for options	commit \| commitdiff \| tree
2016-08-18	Teemu Murtola	Support for non-string option value assignment	commit \| commitdiff \| tree
2016-08-17	Teemu Murtola	Basic support for array-of-structs in options	commit \| commitdiff \| tree
2016-08-17	Teemu Murtola	Generalize and simplify option value storage	commit \| commitdiff \| tree
2016-08-17	Teemu Murtola	Generalize option section internals	commit \| commitdiff \| tree
2016-08-17	Teemu Murtola	Reimplement subsections in Options	commit \| commitdiff \| tree
2016-08-04	Teemu Murtola	Fix/improve doc links in template/README	commit \| commitdiff \| tree
2016-08-01	Teemu Murtola	Function to split delimited strings	commit \| commitdiff \| tree
2016-07-14	Teemu Murtola	Use newer gcc for coverage	commit \| commitdiff \| tree
2016-07-07	Teemu Murtola	Change handling for missing releng docs	commit \| commitdiff \| tree
2016-06-30	Teemu Murtola	Extract string parsing routines to utility	commit \| commitdiff \| tree
2016-06-28	Teemu Murtola	Split up compare.*	commit \| commitdiff \| tree
2016-06-27	Teemu Murtola	Factory for creating t_inputrec	commit \| commitdiff \| tree
2016-06-01	Teemu Murtola	Use C++ replacement for md_logging.*	commit \| commitdiff \| tree
2016-06-01	Teemu Murtola	Basic C++ logging interface	commit \| commitdiff \| tree
2016-05-31	Teemu Murtola	Improve make_ndx help text	commit \| commitdiff \| tree
2016-05-25	Teemu Murtola	Support for real MPI unit tests	commit \| commitdiff \| tree
2016-05-24	Teemu Murtola	Tests for single-rank thread affinity setting	commit \| commitdiff \| tree
2016-05-21	Teemu Murtola	Pass number of local threads to thread affinity	commit \| commitdiff \| tree
2016-05-21	Teemu Murtola	Allow creating mock HardwareTopology objects	commit \| commitdiff \| tree
2016-05-21	Teemu Murtola	Use only HardwareTopology for thread affinity	commit \| commitdiff \| tree
2016-05-21	Teemu Murtola	Merge branch release-2016	commit \| commitdiff \| tree
2016-05-21	Teemu Murtola	Bump version numbers for 2017 development	commit \| commitdiff \| tree
2016-05-17	Teemu Murtola	Fix some thread affinity cases	commit \| commitdiff \| tree
2016-05-10	Teemu Murtola	Additional Jenkins documentation	commit \| commitdiff \| tree
2016-05-10	Teemu Murtola	Include releng documentation to developer guide	commit \| commitdiff \| tree
2016-05-08	Teemu Murtola	Support for OpenCL CI builds	commit \| commitdiff \| tree
2016-05-05	Teemu Murtola	Merge branch release-5-1	commit \| commitdiff \| tree
2016-05-05	Teemu Murtola	Make Sphinx build silent for version 1.3+	commit \| commitdiff \| tree
2016-05-03	Teemu Murtola	Mark optional input/output files in gmx order	commit \| commitdiff \| tree
2016-04-28	Teemu Murtola	Use HardwareTopology to set nthreads_hw_avail	commit \| commitdiff \| tree
2016-04-28	Teemu Murtola	Remove gmx_hw_info_t::ncore	commit \| commitdiff \| tree
2016-04-27	Teemu Murtola	Improve release workflow testing	commit \| commitdiff \| tree
2016-04-27	Teemu Murtola	Disable multiple ranks for non-MPI unit tests	commit \| commitdiff \| tree
2016-04-27	Teemu Murtola	Fix issues with failing thread affinity setting	commit \| commitdiff \| tree
2016-04-27	Teemu Murtola	Merge "Merge branch release-5-1"	commit \| commitdiff \| tree
2016-04-18	Teemu Murtola	Make thread affinity failures always end up in log	commit \| commitdiff \| tree
2016-03-30	Teemu Murtola	Make includesorter.py work with Doxygen 1.8.10+	commit \| commitdiff \| tree
2016-03-30	Teemu Murtola	Fix error reporting for documentation build	commit \| commitdiff \| tree
2016-03-28	Teemu Murtola	More support for release workflow	commit \| commitdiff \| tree
2016-03-26	Teemu Murtola	Ignore empty GMXLIB	commit \| commitdiff \| tree
2016-03-14	Teemu Murtola	Add tests for empty strings in refdata	commit \| commitdiff \| tree
2016-03-13	Teemu Murtola	Support replacing solvent in insert-molecules	commit \| commitdiff \| tree
2016-02-01	Teemu Murtola	Handle pdbinfo in AtomsBuilder	commit \| commitdiff \| tree
2016-01-28	Teemu Murtola	Update build scripts to releng changes	commit \| commitdiff \| tree
2016-01-24	Teemu Murtola	Document limitations on 32-bit Linux	commit \| commitdiff \| tree
2016-01-12	Teemu Murtola	Make GMX_MPI always defined to 0/1	commit \| commitdiff \| tree
2016-01-12	Teemu Murtola	Move flags out of t_trxframe	commit \| commitdiff \| tree
2016-01-12	Teemu Murtola	Remove historical times from t_trxframe	commit \| commitdiff \| tree
2016-01-12	Teemu Murtola	Support passing tarball MD5 for webpage build	commit \| commitdiff \| tree
2016-01-12	Teemu Murtola	Remove vmdplugin from t_trxframe	commit \| commitdiff \| tree
2016-01-11	Teemu Murtola	Convert more config.h defines to 0/1	commit \| commitdiff \| tree
2016-01-10	Teemu Murtola	Support trajectory analysis with any atom subset	commit \| commitdiff \| tree
2016-01-10	Teemu Murtola	Support frames with atom subsets in selections	commit \| commitdiff \| tree
2016-01-10	Teemu Murtola	Support arbitrary subset trajectories in poscalc.*	commit \| commitdiff \| tree
2016-01-10	Teemu Murtola	Make file names in fatal error messages more robust	commit \| commitdiff \| tree
2016-01-10	Teemu Murtola	Do not warn about missing OpenMP with GMX_GPU=OFF	commit \| commitdiff \| tree
2016-01-10	Teemu Murtola	More config.h macros to 0/1	commit \| commitdiff \| tree
2016-01-10	Teemu Murtola	Convert some config.h macros to use 0/1	commit \| commitdiff \| tree
2016-01-05	Teemu Murtola	Update packaging build	commit \| commitdiff \| tree
2015-12-31	Teemu Murtola	Report used defines in check-source	commit \| commitdiff \| tree
2015-12-29	Teemu Murtola	Packaging build script for web site	commit \| commitdiff \| tree
2015-12-29	Teemu Murtola	Reduce inputrec.h dependencies	commit \| commitdiff \| tree
2015-12-27	Teemu Murtola	Improve text writing in help output	commit \| commitdiff \| tree
2015-12-27	Teemu Murtola	Source packaging with new releng	commit \| commitdiff \| tree
2015-12-27	Teemu Murtola	Further vec.h cleanup	commit \| commitdiff \| tree
2015-12-26	Teemu Murtola	Clean up vec.h	commit \| commitdiff \| tree
2015-12-24	Teemu Murtola	Add functionality to TextWriter	commit \| commitdiff \| tree
2015-12-20	Teemu Murtola	Fix most warnings with Doxygen 1.8.10	commit \| commitdiff \| tree
2015-12-19	Teemu Murtola	Update versioning for new scheme	commit \| commitdiff \| tree
2015-12-16	Teemu Murtola	Move calcgrid.* to fft/	commit \| commitdiff \| tree
2015-12-15	Teemu Murtola	Move main., splitter., gmx_omp_nthreads.* to mdlib	commit \| commitdiff \| tree
2015-12-15	Teemu Murtola	Move readinp.* and warninp.* to fileio/	commit \| commitdiff \| tree
2015-12-15	Teemu Murtola	Move hardware detection to hardware/	commit \| commitdiff \| tree
2015-12-15	Teemu Murtola	Move some mdrun code out of gmxlib/	commit \| commitdiff \| tree
2015-12-15	Teemu Murtola	Move gpu_utils etc. out of gmxlib	commit \| commitdiff \| tree
2015-12-14	Teemu Murtola	Install baseversion.h	commit \| commitdiff \| tree
2015-12-12	Teemu Murtola	Create separate module for trajectory data	commit \| commitdiff \| tree
2015-12-12	Teemu Murtola	Move disre.* and orires.* to listed-forces/	commit \| commitdiff \| tree
2015-12-12	Teemu Murtola	Move ifunc.* to topology/	commit \| commitdiff \| tree
2015-12-12	Teemu Murtola	Move put_atoms_in_box_omp() to sim_util.*	commit \| commitdiff \| tree
2015-12-12	Teemu Murtola	Remove topology -> fileio dependency	commit \| commitdiff \| tree
2015-12-11	Teemu Murtola	Merge "Merge branch 'origin/release-5-1'"	commit \| commitdiff \| tree
2015-12-09	Teemu Murtola	Split txtdump.*, part 2	commit \| commitdiff \| tree
2015-12-09	Teemu Murtola	Split txtdump.*, part 1	commit \| commitdiff \| tree
2015-12-03	Teemu Murtola	Move strdb.* to utility/	commit \| commitdiff \| tree
2015-12-03	Teemu Murtola	Move filenm.* to commandline	commit \| commitdiff \| tree
2015-12-02	Teemu Murtola	Split filenm.*	commit \| commitdiff \| tree
2015-11-30	Teemu Murtola	Remove topology -> mdtypes dependency	commit \| commitdiff \| tree
2015-11-30	Teemu Murtola	Remove obsolete references to legacyheaders/	commit \| commitdiff \| tree
2015-11-30	Teemu Murtola	Merge remaining legacyheaders/types/ to mdtypes/	commit \| commitdiff \| tree
2015-11-30	Teemu Murtola	Move ifunc.h to gmxlib	commit \| commitdiff \| tree
2015-11-30	Teemu Murtola	Move force_flags.h to mdlib/	commit \| commitdiff \| tree
2015-11-30	Teemu Murtola	libgromacs CMake source file management cleanup	commit \| commitdiff \| tree
2015-11-30	Teemu Murtola	Move hardware info structs to hardware/	commit \| commitdiff \| tree
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