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Change grompp disres cost to linear
2020-06-24
Berk He
s
s
Change
grompp
d
i
s
r
es
cost to line
a
r
commit
|
commitdiff
|
tree
2020-06-24
Roland Schulz
Fix clF
F
T
b
uild wit
h
out G
M
X_LOAD_PLUGINS
commit
|
commitdiff
|
tree
2020-06-23
Berk Hess
Add vi
r
tua
l
site
wit
h
one constructing atom
commit
|
commitdiff
|
tree
2020-06-23
Kevin Bo
y
d
[W
I
P]
Run regressi
o
n tests under ASAN
commit
|
commitdiff
|
tree
2020-06-22
M
.
Eric Irrgang
Reforma
t
pai
r
s
.
cpp
commit
|
commitdiff
|
tree
2020-06-22
M
.
Eric I
r
r
g
ang
Use Gromacs::gmx target to
h
int gmxapi tests
.
commit
|
commitdiff
|
tree
2020-06-17
Erik Linda
h
l
S
implified
u
ni
f
o
rm G
P
U
selection in CM
a
ke
commit
|
commitdiff
|
tree
2020-06-15
Er
i
k Lindahl
Replace
t
rivalu
e
options with plain b
o
ol
e
ans
commit
|
commitdiff
|
tree
2020-06-12
Artem Zhmurov
Replace compile_
c
pp_as_cuda(
.
.
.
) with
C
U
D
A
runtime
.
.
.
commit
|
commitdiff
|
tree
2020-06-09
M
.
Eric Irrgang
Compa
r
tm
e
nta
l
ize job
ru
l
es
.
commit
|
commitdiff
|
tree
2020-06-09
Artem Z
h
mur
o
v
Make SD stuff privat
e
for u
p
date
.
cp
p
commit
|
commitdiff
|
tree
2020-06-09
Artem Zhmurov
M
ake SD stu
f
f private for update
.
cp
p
commit
|
commitdiff
|
tree
2020-06-05
Berk Hess
Remove COM f
r
om SETT
L
E
commit
|
commitdiff
|
tree
2020-06-05
Pa
u
l Bauer
U
se
moltype
directly for obtaining residueAtomRanges
commit
|
commitdiff
|
tree
2020-06-04
Paul Bauer
Ad
d
a
bility t
o
c
h
o
s
e re
g
ressiontest commit
a
nd
b
ranch
commit
|
commitdiff
|
tree
2020-06-04
Artem Zhmurov
C
o
ol quote
commit
|
commitdiff
|
tree
2020-06-03
E
r
ik Lindahl
Remove 'registe
r
'
sto
r
age class
i
n clF
F
T
commit
|
commitdiff
|
tree
2020-06-03
Gilles
Goua
i
llardet
no
n
b
onded-benchmark: run c
o
mbrule=none when the -a
l
l
.
.
.
commit
|
commitdiff
|
tree
2020-06-02
Paul Bauer
Add function
to get re
s
idue start and end
commit
|
commitdiff
|
tree
2020-06-01
M
a
rk Abra
h
am
Fi
x
atomics con
f
igu
r
e t
e
st
commit
|
commitdiff
|
tree
2020-05-29
Mark Abraham
Make Cygwi
n
b
u
ild work
commit
|
commitdiff
|
tree
2020-05-28
M
.
Eri
c
Ir
r
g
a
ng
Rem
o
v
e
un
u
sed (and broken) image from Dock
e
r image
.
.
.
commit
|
commitdiff
|
tree
2020-05-26
Artem
Z
hmurov
R
e
mov
e
the de
p
endence on Constraints object o
n
t_m
d
atoms
commit
|
commitdiff
|
tree
2020-05-25
P
aul Bauer
Fix clang-tidy
w
arnings
commit
|
commitdiff
|
tree
2020-05-23
Paul Bau
e
r
Mod
e
rn
i
ze convert
-
tpr
commit
|
commitdiff
|
tree
2020-05-23
Paul Bauer
Add tests fo
r
tool help out
p
ut writin
g
commit
|
commitdiff
|
tree
2020-05-15
Ar
t
em Zhmu
r
ov
Unify CUDA and Ope
n
CL l
o
okup-table
cr
e
ation
commit
|
commitdiff
|
tree
2020-05-14
M
.
Eric Irrgang
Red
u
ce con
s
ol
e
log output
from
sample_restraint tes
t
s
.
commit
|
commitdiff
|
tree
2020-05-14
Berk He
s
s
Extr
a
c
t po
s
tProc
e
ssForce
W
ithShiftFor
c
es
(
)
commit
|
commitdiff
|
tree
2020-05-14
Paul Bauer
Avoid
C
I errors from o
v
erload
i
ng
r
e
sour
c
e
s
commit
|
commitdiff
|
tree
2020-05-12
B
e
rk Hess
Ex
t
ract helper for
c
e buffer
s
t
o
a separat
e
class
commit
|
commitdiff
|
tree
2020-05-12
Be
r
k Hess
Refacto
r
virtual site
i
nter
f
a
ce
commit
|
commitdiff
|
tree
2020-05-12
Paul
B
auer
Fix archiv
e
b
u
ild
commit
|
commitdiff
|
tree
2020-05-06
P
aul
Bauer
M
e
r
g
e b
r
anch
'
origin/rele
a
se-2020' into ma
s
ter
commit
|
commitdiff
|
tree
2020-05-05
Paul Bau
e
r
Fix copyright
commit
|
commitdiff
|
tree
2020-05-04
P
aul Bauer
Use test conversion script from so
u
rce
commit
|
commitdiff
|
tree
2020-05-04
Paul
B
auer
Fix incorre
c
t
header and linter
scr
i
pts
commit
|
commitdiff
|
tree
2020-05-04
Pascal Mer
z
Catch errors in v-r
e
scale and
P
arr
i
n
e
ll
o
-Rahm
a
n
checkpo
i
nting
commit
|
commitdiff
|
tree
2020-05-01
P
aul Bauer
Prepare for 20
2
0
.
3
commit
|
commitdiff
|
tree
2020-04-30
Pau
l
Bauer
GROMACS versio
n
2
020
.
2
commit
|
commitdiff
|
tree
2020-04-30
Pa
u
l
B
a
uer
Pri
n
t
b
a
se commit for s
o
urce linter
s
commit
|
commitdiff
|
tree
2020-04-30
P
aul Bauer
F
ix incorre
c
t
heade
r
and l
i
nter scripts
commit
|
commitdiff
|
tree
2020-04-30
Mark Abraham
Rem
o
ve bundled
FindCUDA
.
cmake
commit
|
commitdiff
|
tree
2020-04-30
Paul Bauer
D
i
s
allow combinati
o
n
o
f
g
cc > 9
a
n
d
I
BM_VSX
commit
|
commitdiff
|
tree
2020-04-30
Mark Abraham
Fix com
p
iler flag
repor
t
ing
commit
|
commitdiff
|
tree
2020-04-29
Mark Abraham
U
p
d
a
te cmake version
f
or
d
ocs c
o
nt
a
iner
commit
|
commitdiff
|
tree
2020-04-29
P
aul Bauer
Print base commit for sou
r
ce linters
commit
|
commitdiff
|
tree
2020-04-29
P
aul Bau
e
r
Use test conversion sc
r
i
pt from sou
r
ce
commit
|
commitdiff
|
tree
2020-04-29
Mark
A
bra
h
am
Bas
e
l
ine
commit
commit
|
commitdiff
|
tree
2020-04-27
Paul Bauer
Bui
l
d
p
ython
p
a
c
k
age
for
d
o
c
umen
t
at
i
on builds
commit
|
commitdiff
|
tree
2020-04-27
Pa
u
l Bauer
Fix warnin
g
for retu
r
n type
commit
|
commitdiff
|
tree
2020-04-27
Paul Ba
u
er
Fix b
u
g in
so
u
rce
v
erificati
o
n on Windows
commit
|
commitdiff
|
tree
2020-04-25
Paul
B
a
u
e
r
Use b
r
a
n
ch po
i
n
t
also for format an
d
copyright check
commit
|
commitdiff
|
tree
2020-04-25
M
.
Eric Ir
r
g
a
n
g
Note CUDA builds in
j
ob names
.
commit
|
commitdiff
|
tree
2020-04-23
P
aul Ba
u
er
Make clang-t
i
dy
s
cr
i
pt mo
r
e rob
u
st
commit
|
commitdiff
|
tree
2020-04-23
P
a
u
l
Bauer
Fix
p
arallel testing
commit
|
commitdiff
|
tree
2020-04-23
Mark Abraham
Fix warning
s
for no-mpi build
commit
|
commitdiff
|
tree
2020-04-22
Paul Ba
u
er
Copy of CI from m
a
st
e
r t
o
2
020
commit
|
commitdiff
|
tree
2020-04-17
Ch
r
i
s
tian Blau
p
r
opo
s
ed f
i
x
for
redmine bug
#3403
commit
|
commitdiff
|
tree
2020-04-17
Paul Bauer
Fix check
sourc
e
not parsing errors and
w
arnings co
r
rec
t
ly
commit
|
commitdiff
|
tree
2020-04-16
Ma
r
k A
b
raham
Intro
d
uce GMX_USE_SI
M
D_KERNELS cmake option
commit
|
commitdiff
|
tree
2020-04-16
Paul Bauer
Use GPU resources for build types again
commit
|
commitdiff
|
tree
2020-04-15
M
.
Eric Irrgan
g
Change
defaul
t
CMa
k
e version to 3
.
1
3
.
0 for CI images
.
commit
|
commitdiff
|
tree
2020-04-14
Mar
k
A
b
raham
Fix more cla
n
g warni
n
gs
commit
|
commitdiff
|
tree
2020-04-14
M
.
Eric Irr
g
ang
Fix inval
i
d gitlab-ci
.
ym
l
commit
|
commitdiff
|
tree
2020-04-13
Paul Bauer
Fi
x
clang-
t
id
y
script and code issue
commit
|
commitdiff
|
tree
2020-04-12
S
z
il
á
rd Pál
l
F
ix cla
n
g 10 -W
i
mplicit-int-flo
a
t-conversi
o
n warnings
commit
|
commitdiff
|
tree
2020-04-12
Ma
r
k Abraha
m
Finish remo
v
ing ENCAD shifts and table generation
commit
|
commitdiff
|
tree
2020-04-12
Mark Abraham
U
pdate to clang-tidy-9
commit
|
commitdiff
|
tree
2020-04-10
Christoph Jungh
a
ns
cmake
:
fix exporte
d
targ
e
t
commit
|
commitdiff
|
tree
2020-04-06
P
a
ul Bauer
Add AMD im
a
ge buil
d
, v2
commit
|
commitdiff
|
tree
2020-04-02
M
.
E
ric Ir
r
gang
Moderniz
e
s
o
me Pytho
n
s
u
bprocess calls
.
commit
|
commitdiff
|
tree
2020-03-31
M
.
E
r
ic Irrg
a
ng
Up
d
ate scripts for all o
f
the requested pre-com
m
it
.
.
.
commit
|
commitdiff
|
tree
2020-03-27
M
.
Eric Irrg
a
n
g
Compa
r
tmentalize hpcc
m
build st
a
ges
.
commit
|
commitdiff
|
tree
2020-03-27
M
.
Eric Irrgang
Be friendlier w
.
r
.
t
.
link
c
hecker
.
commit
|
commitdiff
|
tree
2020-03-23
Paul Bau
e
r
Fix releas
e
builds
o
n Gitlab with regress
i
ontests
commit
|
commitdiff
|
tree
2020-03-23
M
.
Er
i
c Irrgang
N
ormalize so
m
e more j
o
b
names
.
commit
|
commitdiff
|
tree
2020-03-23
M
.
Eric Irr
g
ang
Simplify ar
c
hive
.
gi
t
l
a
b-ci
.
ym
l
commit
|
commitdiff
|
tree
2020-03-23
M
.
Eric
Irrgang
Remove redun
d
ant
j
o
b
s
.
commit
|
commitdiff
|
tree
2020-03-23
M
.
Eric Irrgang
Fix
duplic
a
t
e variables param
e
ter
.
commit
|
commitdiff
|
tree
2020-03-23
M
.
Eric Ir
r
gang
Ad
d
required Infrastru
c
ture for
G
i
tlab merg
e
s
commit
|
commitdiff
|
tree
2020-03-23
M
.
Eric Irrgan
g
Normalize naming for g
r
omacs build/testing jobs
.
commit
|
commitdiff
|
tree
2020-03-23
M
.
Eri
c
Irrgang
Re
m
o
v
e some unne
c
essary indirection in job definitions
.
commit
|
commitdiff
|
tree
2020-03-23
M
.
Eri
c
Irrgang
Consolidat
e
.
us
e
-cl
a
ngX CI job mix-in
.
commit
|
commitdiff
|
tree
2020-03-23
M
.
Eric Irr
g
a
n
g
C
o
nsolidate
.
u
se-gccX CI jo
b
mix-in
.
commit
|
commitdiff
|
tree
2020-03-22
Paul B
a
uer
Fix r
e
lease buil
d
s on Gitlab with regre
s
sionte
s
t
s
commit
|
commitdiff
|
tree
2020-03-22
M
.
Eric Irrgang
A
dopt CI job naming guid
e
lines
.
commit
|
commitdiff
|
tree
2020-03-22
M
.
Eric
Irrga
n
g
Normali
z
e GitLab
-
C
I *cache* param
e
te
r
.
commit
|
commitdiff
|
tree
2020-03-22
M
.
E
r
i
c
Ir
r
gang
Merge environment support into global
.
gitlab-ci
.
yml
commit
|
commitdiff
|
tree
2020-03-22
M
.
Eri
c
Irrgang
Move
.
build-t
e
mp
l
at
e
.
yml
definitions closer to point
.
.
.
commit
|
commitdiff
|
tree
2020-03-22
M
.
Eric I
r
rgang
M
e
rge *-test-template
.
yml into t
e
sting-matrix
.
gi
t
lab
.
.
.
commit
|
commitdiff
|
tree
2020-03-22
M
.
Eric Ir
r
gan
g
M
e
rge
.
t
e
st-r
u
nner-temp
l
ate
.
yml into t
e
sting-matrix
.
.
.
commit
|
commitdiff
|
tree
2020-03-22
M
.
Eric Irrgang
Merge
.
te
s
t-s
c
ript
-
template
.
yml
i
nto testing-matrix
.
.
.
commit
|
commitdiff
|
tree
2020-03-22
M
.
Eric Irrga
n
g
Merge
.
regres
s
ion
t
e
st-te
m
p
late
.
yml into
a
rchiv
e
config
.
commit
|
commitdiff
|
tree
2020-03-22
M
.
Eric
I
rrgang
Co
n
solidate documentation templates
.
commit
|
commitdiff
|
tree
2020-03-22
M
.
E
ric
I
rrgang
Reorga
n
ize
r
elease templates
.
commit
|
commitdiff
|
tree
2020-03-22
Pau
l
Bauer
Add Doc
u
mentation build to
script
commit
|
commitdiff
|
tree
2020-03-20
Pa
u
l
Bauer
Add script t
o
generate CI Do
c
ker f
i
l
es
commit
|
commitdiff
|
tree
2020-03-19
Paul B
a
uer
Add required
I
nfra
s
tructure for Gitlab merg
e
s
commit
|
commitdiff
|
tree
2020-03-18
Paul
B
auer
Fix image mi
x
up
f
or
G
It
l
ab
do
c
b
uilds
commit
|
commitdiff
|
tree
next