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Enable GMX_GPU=SYCL compiles
2020-09-15
Erik L
i
ndahl
Enabl
e
G
M
X
_GPU=SYCL co
m
piles
commit
|
commitdiff
|
tree
2020-09-15
A
lan Gray
P
a
ss de
v
F
l
ag
s
i
n
to creat
e
Simulat
i
o
n
Workloa
d
replacing
.
.
.
commit
|
commitdiff
|
tree
2020-09-14
M
.
E
ric Irrgang
Refine t
h
e CMakeLists
.
txt f
o
r MPI gmxapi tests
.
commit
|
commitdiff
|
tree
2020-09-13
Berk H
e
ss
Dec
o
uple nsttco
u
p
l
e and
nstp
c
ou
p
l
e
from nstlist
commit
|
commitdiff
|
tree
2020-09-11
A
rtem Zhmu
r
ov
Def
i
n
e stubs for G
P
U dat
a
structures
i
n SY
C
L to
mak
e
.
.
.
commit
|
commitdiff
|
tree
2020-09-10
Roland Schulz
Fix Visual
Studio
build
commit
|
commitdiff
|
tree
2020-09-10
Roland Schul
z
Simpify Checkp
o
intData
commit
|
commitdiff
|
tree
2020-09-08
Alan G
r
ay
Bug fix
in call to deviceStreamManag
e
r
c
onstructor
commit
|
commitdiff
|
tree
2020-09-08
Pascal
M
erz
Make le
g
acy
energy elements us
e
C
heckpoin
t
Da
t
a
commit
|
commitdiff
|
tree
2020-09-07
Artem
Zhmurov
Access the
d
evice s
t
at
u
s
directly,
r
emove the ge
t
ter
commit
|
commitdiff
|
tree
2020-09-06
Pasca
l
Merz
Pre
p
a
r
e legacy chec
k
poin
t
fo
r
modular simul
a
tor ch
e
ckpointing
commit
|
commitdiff
|
tree
2020-09-03
Magn
u
s Lundborg
P
r
int lambda state to
log file if
using AWH for FEP
.
commit
|
commitdiff
|
tree
2020-09-02
Be
r
k H
e
ss
Ena
b
le s
p
litting of listed
i
nteraction calculation
commit
|
commitdiff
|
tree
2020-09-02
G
ille
s
G
o
uaillarde
t
F
ix impro
v
ed S
I
MD angle
s
()
commit
|
commitdiff
|
tree
2020-08-31
Paul
B
auer
Merge branc
h
'rele
a
se-202
0
' into
master
commit
|
commitdiff
|
tree
2020-08-26
Mark Abraham
P
erm
i
t bu
i
l
d w
i
th C
U
DA 11
.
0
commit
|
commitdiff
|
tree
2020-08-26
Gilles Gouaillardet
fix c
h
ec
k
_
ass
i
g
n
_interactions_at
o
m()
commit
|
commitdiff
|
tree
2020-08-20
E
r
i
k
Linda
h
l
En
a
ble CI testing of OpenAPI
/ OpenCL
commit
|
commitdiff
|
tree
2020-08-17
M
a
rk Abraham
Restore u
s
e of CUDA 11
.
0
in CI
commit
|
commitdiff
|
tree
2020-08-17
Paul B
a
uer
Fix
clang-fo
r
mat
commit
|
commitdiff
|
tree
2020-08-17
Mark Abraham
Build fewer unnecessary SIMD kernel
s
in
CI
commit
|
commitdiff
|
tree
2020-08-16
Pascal Merz
Mo
d
ula
r
simu
l
ator: Don't wrap std::func
t
i
o
n in uniqu
e
_ptr
commit
|
commitdiff
|
tree
2020-08-14
Artem Zh
m
urov
Fix De
v
iceStreamManager t
e
s
t
s
commit
|
commitdiff
|
tree
2020-08-12
Jeff Hammond
imp
l
ement AVX
-
5
1
2 se
c
ond FMA detec
t
i
o
n
commit
|
commitdiff
|
tree
2020-08-07
Mark Abraham
Fix release build war
n
ing
commit
|
commitdiff
|
tree
2020-07-31
M
.
Eric Irrgang
Fi
x
some minor typ
e
settin
g
i
s
su
e
s
.
commit
|
commitdiff
|
tree
2020-07-31
M
.
Eric Irrga
n
g
Improve install docs
l
inks
.
commit
|
commitdiff
|
tree
2020-07-31
Be
r
k Hess
Move foreign potential
e
n
e
r
gy accumulation
commit
|
commitdiff
|
tree
2020-07-29
M
.
Eric Irrgang
Use GMXAPI CMake option guard for gmxapi target declaration
.
commit
|
commitdiff
|
tree
2020-07-29
Kevin Boy
d
Fix undefined behavior flagged by UBSAN
commit
|
commitdiff
|
tree
2020-07-29
Arte
m
Zh
m
u
rov
Rever
t
c++-17 fe
a
tures that are n
o
t
supp
o
rted by CUDA
.
.
.
commit
|
commitdiff
|
tree
2020-07-27
Paul Bauer
R
evert
"Change builds
that
u
se
failing d
o
c
k
er containers"
commit
|
commitdiff
|
tree
2020-07-09
Paul
Bauer
Prepare
f
or GROMACS
2020
.
4
commit
|
commitdiff
|
tree
2020-07-09
Paul Bauer
GROMACS version 2020
.
3
commit
|
commitdiff
|
tree
2020-07-01
Roland Schu
l
z
Simplify I
t
erators
commit
|
commitdiff
|
tree
2020-07-01
Paul Bauer
Di
s
a
b
le failing builds f
o
r mast
e
r branch
commit
|
commitdiff
|
tree
2020-06-26
Pa
u
l
B
a
uer
Make DSSP
def
a
u
lt
p
ath conf
i
gurable
commit
|
commitdiff
|
tree
2020-06-26
Rola
n
d Sch
u
l
z
MKL
N
ULL->nullptr and remove
d
e
ad code
commit
|
commitdiff
|
tree
2020-06-25
Mark Abraha
m
R
estored t
h
e com
m
ent
commit
|
commitdiff
|
tree
2020-06-25
Artem Zhmurov
Mak
e
cl_nbparam into a stru
c
t
commit
|
commitdiff
|
tree
2020-06-24
Berk
H
ess
Add cl
a
ss Liste
d
Forces
commit
|
commitdiff
|
tree
2020-06-24
Berk Hess
Ch
a
n
g
e gromp
p
disres cost to li
n
ear
commit
|
commitdiff
|
tree
2020-06-24
Rola
n
d
Schulz
Fi
x
c
lFFT b
u
ild without GMX_LOAD_PLUGINS
commit
|
commitdiff
|
tree
2020-06-23
Be
r
k Hes
s
Add vi
r
tual site with one cons
t
ructing atom
commit
|
commitdiff
|
tree
2020-06-23
Kevin Boyd
[WIP
]
Run regression tes
t
s
und
e
r
ASA
N
commit
|
commitdiff
|
tree
2020-06-22
M
.
Eric Irrgang
Reformat pairs
.
cpp
commit
|
commitdiff
|
tree
2020-06-22
M
.
Eric Irrgang
U
se Gromacs::gmx
t
arget
to hint gmxapi tests
.
commit
|
commitdiff
|
tree
2020-06-17
E
r
ik
Lindahl
Simp
l
ifi
e
d uniform
GPU selection
i
n CMake
commit
|
commitdiff
|
tree
2020-06-15
Erik Li
n
dahl
Repl
a
c
e
t
rivalue options w
i
t
h
plain
bool
e
a
ns
commit
|
commitdiff
|
tree
2020-06-12
Arte
m
Zhmurov
Replace compile_cpp_as_cuda(
.
.
.
)
with
CUDA r
u
ntime
.
.
.
commit
|
commitdiff
|
tree
2020-06-11
Paul Bauer
Fix
f
alse
initializati
o
n values
i
n gmx hbo
n
d
commit
|
commitdiff
|
tree
2020-06-10
P
aul Bauer
Proper fix
f
or gmx do_dssp
commit
|
commitdiff
|
tree
2020-06-09
M
.
Eric
Irrgang
Compartmenta
l
ize
job rules
.
commit
|
commitdiff
|
tree
2020-06-09
Artem
Z
h
murov
Mak
e
SD stuff private for update
.
cpp
commit
|
commitdiff
|
tree
2020-06-09
Art
e
m Zhmurov
Mak
e
S
D
stuff privat
e
for
u
pdate
.
cpp
commit
|
commitdiff
|
tree
2020-06-05
Paul Ba
u
er
Fix segmentation f
a
ult when reading ene
r
gy terms
commit
|
commitdiff
|
tree
2020-06-05
Berk Hess
Remove COM from SETTLE
commit
|
commitdiff
|
tree
2020-06-05
Art
e
m Zhmurov
Make a error message less c
o
nfusing
commit
|
commitdiff
|
tree
2020-06-05
Paul Bauer
U
s
e moltype directly
f
or obtain
i
ng r
e
sidueAtomRanges
commit
|
commitdiff
|
tree
2020-06-04
Paul Bauer
Add abi
l
ity to ch
o
se regr
e
ssiontest c
o
mmit and branch
commit
|
commitdiff
|
tree
2020-06-04
Te
r
ry Mahaffey
Remove the c++14
flag f
o
r
CUDA bu
i
lds on Wind
o
ws
.
This
.
.
.
commit
|
commitdiff
|
tree
2020-06-04
Ar
t
em Z
h
mur
o
v
C
ool
q
uote
commit
|
commitdiff
|
tree
2020-06-03
Erik L
i
ndahl
Remo
v
e 'reg
i
ster' sto
r
age
cl
a
ss in clFFT
commit
|
commitdiff
|
tree
2020-06-03
Gil
l
es Gouaillardet
nonbonded-b
e
nchmark: run combrule=none when the
-all
.
.
.
commit
|
commitdiff
|
tree
2020-06-02
Paul Bau
e
r
Add func
t
ion to get residue star
t
an
d
end
commit
|
commitdiff
|
tree
2020-06-01
Mar
k
Abraham
Fix atomics con
f
igure tes
t
commit
|
commitdiff
|
tree
2020-05-29
Mark Abraham
Make Cygwi
n
build work
commit
|
commitdiff
|
tree
2020-05-28
M
.
Eric Irrgang
Remov
e
unused (an
d
broke
n
) ima
g
e from Doc
k
er im
a
g
e
.
.
.
commit
|
commitdiff
|
tree
2020-05-26
Artem Zhmurov
Re
m
ove the
d
ependence on C
o
nstraints obj
e
ct on t_mdatoms
commit
|
commitdiff
|
tree
2020-05-25
P
aul Bauer
Fix clang-tid
y
warnings
commit
|
commitdiff
|
tree
2020-05-23
Paul Baue
r
Moderni
z
e convert-tpr
commit
|
commitdiff
|
tree
2020-05-23
Paul B
a
uer
Add tests for t
o
ol help out
p
ut writing
commit
|
commitdiff
|
tree
2020-05-22
Paul Bauer
Av
o
id parsing of fatalerror
.
cpp as lint
f
ailure
commit
|
commitdiff
|
tree
2020-05-15
Artem Z
h
murov
Un
i
fy CUDA and Op
e
nCL
lookup-table creatio
n
commit
|
commitdiff
|
tree
2020-05-14
M
.
Eric Irrgang
Re
d
uce console log o
u
tput from s
a
mple_restraint tests
.
commit
|
commitdiff
|
tree
2020-05-14
B
erk Hess
Extract pos
t
ProcessForceWi
t
hShiftForc
e
s()
commit
|
commitdiff
|
tree
2020-05-14
Pau
l
Bau
e
r
A
v
o
id C
I
err
o
rs
f
rom overloading resources
commit
|
commitdiff
|
tree
2020-05-12
Berk
H
ess
Extract h
e
lper force buff
e
rs to a separ
a
te class
commit
|
commitdiff
|
tree
2020-05-12
Berk He
s
s
Refa
c
tor virtu
a
l s
i
te inte
r
face
commit
|
commitdiff
|
tree
2020-05-12
Paul
B
auer
Fix archiv
e
build
commit
|
commitdiff
|
tree
2020-05-07
B
e
rk Hess
Avo
i
d warning during PM
E
t
uning
commit
|
commitdiff
|
tree
2020-05-06
Paul B
a
u
e
r
Mer
g
e bra
n
ch '
o
rigin/release-2020'
i
nto
m
aster
commit
|
commitdiff
|
tree
2020-05-05
Paul Bauer
F
i
x copyright
commit
|
commitdiff
|
tree
2020-05-04
Paul B
a
u
e
r
Us
e
test conversio
n
s
c
ript from source
commit
|
commitdiff
|
tree
2020-05-04
Paul B
a
uer
Fix inc
o
rrect he
a
der and
linter scripts
commit
|
commitdiff
|
tree
2020-05-04
Pas
c
al
Mer
z
Catch
e
rrors in
v
-rescale and Parrinell
o
-
R
a
hm
a
n ch
e
ckpointing
commit
|
commitdiff
|
tree
2020-05-01
Paul
Bau
e
r
Prepare
f
or 2020
.
3
commit
|
commitdiff
|
tree
2020-04-30
Paul Bauer
GROM
A
CS version 2020
.
2
commit
|
commitdiff
|
tree
2020-04-30
Paul B
a
uer
P
r
int base commit for s
o
u
rce l
i
nter
s
commit
|
commitdiff
|
tree
2020-04-30
Paul Bauer
Fix incorrect
h
e
ader and linter
s
cri
p
ts
commit
|
commitdiff
|
tree
2020-04-30
Mark Abraham
R
emov
e
b
u
ndled Find
C
UDA
.
c
make
commit
|
commitdiff
|
tree
2020-04-30
Paul Bauer
Disallo
w
c
ombi
n
ation
o
f gcc > 9 an
d
IBM_VSX
commit
|
commitdiff
|
tree
2020-04-30
Mark Abraham
Fix compiler
flag repor
t
i
n
g
commit
|
commitdiff
|
tree
2020-04-29
Mark Abraham
Update cm
a
k
e
version
fo
r
docs contain
e
r
commit
|
commitdiff
|
tree
2020-04-29
P
a
ul Bauer
Prin
t
ba
s
e c
o
mmit
f
or sou
r
ce linters
commit
|
commitdiff
|
tree
2020-04-29
P
a
ul
Bauer
U
s
e test co
n
version
s
cri
p
t from source
commit
|
commitdiff
|
tree
2020-04-29
M
ark Abrah
a
m
Baseline commit
commit
|
commitdiff
|
tree
2020-04-27
Paul Bauer
Build python
package for documentation build
s
commit
|
commitdiff
|
tree
2020-04-27
Paul B
a
uer
F
i
x w
a
r
n
ing
for return t
y
pe
commit
|
commitdiff
|
tree
2020-04-27
Paul Ba
u
er
Fix bug in
so
u
rce veri
f
i
c
ation on Windo
w
s
commit
|
commitdiff
|
tree
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