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New release, new quotes!
2020-10-07
Erik Lind
a
hl
New release, new quo
t
es!
commit
|
commitdiff
|
tree
2020-10-06
Ar
t
em Z
h
mu
r
ov
Remove unused canComputeOnGpu(
.
.
.
)
f
unction from
d
evice
.
.
.
commit
|
commitdiff
|
tree
2020-10-06
Artem Zhmurov
S
implif
y
G
PU usage
d
e
cision
f
unction signa
t
ur
e
s
commit
|
commitdiff
|
tree
2020-10-06
Andrey A
l
eksee
n
ko
Fix lo
g
ic in init_ewal
d
_coulomb_for
c
e_tabl
e
commit
|
commitdiff
|
tree
2020-10-06
Artem Zhmu
r
o
v
Use new GPU i
n
frastructure in MD
L
ib tests
commit
|
commitdiff
|
tree
2020-10-05
P
a
ul Baue
r
Always set DeviceVe
n
dor
commit
|
commitdiff
|
tree
2020-10-05
Paul Bauer
F
ix debug
message location
commit
|
commitdiff
|
tree
2020-10-05
Paul Bauer
A
d
d muparser and CMake ha
n
dling
commit
|
commitdiff
|
tree
2020-10-05
Paul Bauer
F
i
x
doxyge
n
wa
r
nings
commit
|
commitdiff
|
tree
2020-10-01
Szilárd Páll
Update mdrun-perfo
r
m
a
nce
.
rs
t
commit
|
commitdiff
|
tree
2020-10-01
Gilles G
o
uaillardet
docs: add A
R
M
+
S
VE
s
u
p
port to the rel
e
ase
n
ot
e
s
and
.
.
.
commit
|
commitdiff
|
tree
2020-10-01
Gilles Gouaillardet
hardw
a
re:
detect ARM SVE architectu
r
e a
t
runtim
e
commit
|
commitdiff
|
tree
2020-10-01
Gill
e
s Gouaill
a
rdet
cmake:
u
se
simd support fo
r
ARM+SVE
commit
|
commitdiff
|
tree
2020-10-01
Gilles
Gouaillardet
simd: a
d
d supp
o
rt for aarch64+
s
v
e
(ARM_SVE
)
commit
|
commitdiff
|
tree
2020-10-01
G
ille
s
Gouaillardet
s
i
md: revamp
the (templat
e
d) decr3Hsi
m
d() sub
r
ou
t
in
e
commit
|
commitdiff
|
tree
2020-10-01
Artem Zhmurov
Add missin
g
i
n
c
lude into the tests comparison helper
commit
|
commitdiff
|
tree
2020-10-01
Andrey Alekseenk
o
Device m
a
n
agement: Add
S
YCL
D
eviceB
u
ffer
commit
|
commitdiff
|
tree
2020-09-30
Berk Hess
Mo
v
e c
o
mp
u
teSlowFor
c
es into
s
tep
W
ork
commit
|
commitdiff
|
tree
2020-09-30
Mar
k
Abraham
Fix
w
a
rni
n
gs issued by clang with nvcc
commit
|
commitdiff
|
tree
2020-09-30
Pascal Merz
Fix #3655
commit
|
commitdiff
|
tree
2020-09-29
P
a
ul Bauer
Fix
d
ox
y
g
en
w
arnings
commit
|
commitdiff
|
tree
2020-09-29
ejjordan
Fail gr
a
cefully
w
hen n
b
lib cannot be built
commit
|
commitdiff
|
tree
2020-09-29
Jo
e
Jordan
Add nblib backend:
Part
2 of 2
commit
|
commitdiff
|
tree
2020-09-29
Paul Bauer
Add post su
b
mi
t
r
u
le
s
to CI
commit
|
commitdiff
|
tree
2020-09-28
A
l
an G
r
ay
Remove single-dimension limitation from GPU ha
l
o excha
n
ge
commit
|
commitdiff
|
tree
2020-09-28
A
n
d
rey Alekse
e
nko
F
ix
e
rror in ensureReferenceCoun
t
commit
|
commitdiff
|
tree
2020-09-27
P
ascal Mer
z
Compare
t
ra
j
ectories to reference data
commit
|
commitdiff
|
tree
2020-09-23
Mark
A
b
raham
R
e
port
n
a
m
e
of mi
s
sing OpenCL kernels
commit
|
commitdiff
|
tree
2020-09-21
Ma
r
k Abraham
W
rong logic was used
commit
|
commitdiff
|
tree
2020-09-21
Paul
B
auer
Add
O
penSS
H
to d
o
c
s
bu
i
ld images
commit
|
commitdiff
|
tree
2020-09-16
Berk Hess
R
e
move unnecessary condition
in DD force buffer resizing
commit
|
commitdiff
|
tree
2020-09-15
P
aul
Bauer
F
ix missing ins
t
alle
d
f
iles for Op
e
nCL PME
commit
|
commitdiff
|
tree
2020-09-15
Er
i
k
Lind
a
h
l
F
i
x minor
war
n
i
n
gs noticed
b
y
Intel compi
l
ers
commit
|
commitdiff
|
tree
2020-09-15
Artem Zhmuro
v
F
ix VS
i
te out o
f
ra
n
ge
e
r
ror me
s
sage
commit
|
commitdiff
|
tree
2020-09-11
Pa
u
l Bauer
Rem
o
v
e leftov
e
r dat
a
af
t
er
r
e
f
actorin
g
commit
|
commitdiff
|
tree
2020-09-11
P
aul B
a
uer
Fix do
x
yg
e
n
f
or
u
nu
s
e
d
parameters
.
commit
|
commitdiff
|
tree
2020-09-10
G
illes Gouail
l
ardet
fix ch
e
ck_assign_intera
c
tions
_
atom()
commit
|
commitdiff
|
tree
2020-09-10
Paul Bauer
M
i
nor
f
ix to th
e
p
r
in
t
out for regtest buil
d
s
commit
|
commitdiff
|
tree
2020-09-10
Artem Zhmurov
Use de
v
ice
information o
b
ject inste
a
d of id when perfor
m
ing
.
.
.
commit
|
commitdiff
|
tree
2020-09-10
Joe Jor
d
an
Re
p
lace GMX
_
AS
S
ER
T
with ass
e
rt in ve
c
t
y
pes
.
h
commit
|
commitdiff
|
tree
2020-09-09
Art
e
m Zhmurov
Resto
r
e G
M
X_
F
ORCE_U
P
DATE_DEFAU
L
T_GPU
environment varible
.
.
.
commit
|
commitdiff
|
tree
2020-09-08
Andrey Alek
s
een
k
o
F
ix clang-
t
idy wa
r
n
i
ng
commit
|
commitdiff
|
tree
2020-09-08
Andrey Ale
k
se
e
nko
Fix "GPU detecti
o
n deact
i
vated"
m
e
s
sa
g
e
when
i
t in
.
.
.
commit
|
commitdiff
|
tree
2020-09-07
Christ
i
an Blau
Fix clang
-
f
o
rmat f
a
ilure
in
coordinatet
r
a
n
sformation
.
h
commit
|
commitdiff
|
tree
2020-09-07
Artem Zhmuro
v
Fix c
l
ang-
f
o
r
m
a
t
commit
|
commitdiff
|
tree
2020-09-02
B
e
rk Hes
s
Move listed and wall
f
o
r
ces out of d
o
_f
o
rce_lowle
v
e
l
()
commit
|
commitdiff
|
tree
2020-08-27
M
.
Eric
I
rrga
n
g
Use a h
e
ap object
f
o
r inp
u
tr
e
c in gm
x
:
:
Mdrunner::mdrunner(
)
.
commit
|
commitdiff
|
tree
2020-08-20
A
lan Gray
Fix bug in Lin
c
s G
P
U setup
commit
|
commitdiff
|
tree
2020-08-17
Mark Abraham
Fix isHostMemory
P
i
n
ne
d
for ch
a
nges in CUDA 11
.
0
commit
|
commitdiff
|
tree
2020-08-07
Alan Gray
R
e
vert "Modernize
S
TL usag
e
"
for
fixedC
a
pacityVe
c
tor
commit
|
commitdiff
|
tree
2020-07-30
M
.
Er
i
c Irr
g
ang
Remove
disabled test for s
u
perseded feature
.
commit
|
commitdiff
|
tree
2020-07-27
A
rtem Zhm
u
rov
Fix clang-tidy w
a
rning
commit
|
commitdiff
|
tree
2020-07-24
S
i
mon
C
h
ri
s
t
Assertion string and typo fix
commit
|
commitdiff
|
tree
2020-07-07
C
hristian B
l
au
Move
f
i
n
a
l
i
s
i
n
g routine into mtop
commit
|
commitdiff
|
tree
2020-07-07
P
a
u
l
Bauer
Move densit
y
fittin
g
to its own dire
c
tory
commit
|
commitdiff
|
tree
2020-07-07
K
evin Boyd
Add stri
c
ter ASAN checks
commit
|
commitdiff
|
tree
2020-06-29
Paul Bauer
Make e
v
erything run
o
n Gitlab
i
nfrastructure
.
commit
|
commitdiff
|
tree
2020-06-24
P
a
ul Bauer
F
ix wa
r
n
i
ng
a
bout nee
d
ing
c
o
nfig
.
h
commit
|
commitdiff
|
tree
2020-06-16
Artem Z
h
murov
Add mi
s
sing end-of
-
line i
n
the GPU update
ass
i
g
n
ment
.
.
.
commit
|
commitdiff
|
tree
2020-06-05
Artem Zhm
u
r
o
v
Move
cal
c
ulation
o
f kinetic en
e
rgy to md_support
commit
|
commitdiff
|
tree
2020-06-05
P
a
u
l
Ba
u
er
Fix fail
i
ng webpage
build
commit
|
commitdiff
|
tree
2020-06-04
Art
e
m Zhmurov
Make a error me
s
s
a
ge less
c
onfusing
commit
|
commitdiff
|
tree
2020-06-04
Artem Zh
m
urov
Update the re
l
ease notes
commit
|
commitdiff
|
tree
2020-06-03
Be
r
k H
e
ss
F
i
x missing P
B
C
in
S
H
AKE
commit
|
commitdiff
|
tree
2020-05-29
Paul Bauer
Add test for
I
nteractionLis
t
commit
|
commitdiff
|
tree
2020-05-25
Artem Zhmurov
Remove depend
e
nce on t_mdatoms
from GPU ver
s
ion of
.
.
.
commit
|
commitdiff
|
tree
2020-05-23
Artem Zhmurov
Remove dependence
o
n t
_
mdatoms from
pull code
commit
|
commitdiff
|
tree
2020-05-22
Ar
t
em Zhmurov
Remove dependence
o
f
co
n
strain
t
s on
t
_mdatoms
commit
|
commitdiff
|
tree
2020-05-20
Paul Bauer
Fix co
m
pile err
o
rs
commit
|
commitdiff
|
tree
2020-05-20
M
.
Eric
I
rrgang
Make sure
images have /usr/
b
in/python
commit
|
commitdiff
|
tree
2020-05-19
B
erk Hess
Refac
t
or print_missing_i
n
teractions()
commit
|
commitdiff
|
tree
2020-05-19
Paul Bauer
Remove unneces
s
a
r
y inclu
d
es of arrayref
.
h
commit
|
commitdiff
|
tree
2020-05-11
Artem Zhmu
r
ov
Remove t
h
e duplicating no
t
e
fro
m
the release note
s
commit
|
commitdiff
|
tree
2020-04-29
Ar
t
em Zhmuro
v
Fi
x
the n
u
mbe
r
of steps check
when checkpoint
i
s
l
oaded
commit
|
commitdiff
|
tree
2020-04-29
M
a
r
k
Ab
r
aham
Fixed
several
c
lang-tid
y
issues
commit
|
commitdiff
|
tree
2020-04-16
Artem
Zhmurov
N
ew cool quote
commit
|
commitdiff
|
tree
2020-04-01
Ma
r
k Abraham
Fix minor bu
g
with
t
o
ols tim
e
-unit con
v
ersions
commit
|
commitdiff
|
tree
2020-03-25
Artem Zhmurov
Make use of the DeviceStre
a
mManage
r
commit
|
commitdiff
|
tree
2020-03-20
Ar
t
e
m
Z
hmurov
Ad
d
OpenCL er
r
or reporting to
GP
U
region timer
commit
|
commitdiff
|
tree
2020-03-19
Szilárd
P
áll
Fix DLB initial s
t
ate
r
eporting
commit
|
commitdiff
|
tree
2020-03-18
Mark Abraha
m
F
ix unused
v
ariabl
e
in
PME OpenCL kernel
commit
|
commitdiff
|
tree
2020-03-18
Art
e
m
Zhmurov
Make
so
m
e doxyg
e
n
e
rro
r
s more
c
lear
commit
|
commitdiff
|
tree
2020-03-13
Mar
k
Abraham
Requ
i
re
p
a
d
ded atom data for PME
GPU
commit
|
commitdiff
|
tree
2020-03-11
Szilárd Páll
Reo
r
ganize dipole ca
l
cula
t
io
n
in do_for
c
e
commit
|
commitdiff
|
tree
2020-03-11
Artem Zh
m
urov
Fix th
e
post-
s
u
bm
i
t failures
commit
|
commitdiff
|
tree
2020-03-11
Christi
a
n Blau
Amend
optiona
l
d
o
cumenta
t
i
on
commit
|
commitdiff
|
tree
2020-03-09
Mar
k
Ab
r
aham
Co
n
solida
t
e P
M
E
G
PU spline infrastructure
commit
|
commitdiff
|
tree
2020-03-07
Pau
l
Bau
e
r
Ad
d
clang-ti
d
y script
commit
|
commitdiff
|
tree
2020-03-05
Berk Hes
s
Add InteractionDefinitions
commit
|
commitdiff
|
tree
2020-03-04
M
a
gnu
s
Lundborg
Separat
e
AWH paramet
e
r
r
e
adin
g
a
nd
ch
e
cking
commit
|
commitdiff
|
tree
2020-03-03
Artem Zhmurov
M
o
ve the PmePPCommGp
u
i
n
itializatio
n
from
f
or
c
e
r
e
c
.
.
.
commit
|
commitdiff
|
tree
2020-03-02
Paul Bauer
Ad
d
Cuda
b
uild
to
g
itl
a
b CI
commit
|
commitdiff
|
tree
2020-02-25
Artem Zhmur
o
v
Fix
the RVec
to flo
a
t3 conversion t
e
st
commit
|
commitdiff
|
tree
2020-02-22
David van
d
e
r Spoel
Fixed
b
ug in gmx d
i
sre due to inc
o
nsistenc
y
in
i
nput
.
commit
|
commitdiff
|
tree
2020-02-22
Art
e
m Zhmur
o
v
Add missing header and disable failing te
s
t
commit
|
commitdiff
|
tree
2020-02-20
Art
e
m Zhmurov
Do not call PME GP
U
b
u
ilder in CPU code
p
a
ths
commit
|
commitdiff
|
tree
2020-02-20
Artem Zhmurov
Use
GROMACS
w
ra
p
pers f
o
r EX
P
ECT_TH
R
OW/NO_THROW in PM
E
.
.
.
commit
|
commitdiff
|
tree
2020-02-17
Szilárd Páll
Add simulation workload
f
lag for dipole co
m
putation
commit
|
commitdiff
|
tree
2020-02-15
S
z
i
lár
d
Páll
F
ix gpuudpate
and gpucomm
m
atrix do
c
s
commit
|
commitdiff
|
tree
2020-02-15
Berk He
s
s
Remove
1
p
u
lse DD reque
s
t
commit
|
commitdiff
|
tree
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