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New release, new quotes!
2020-10-07
Erik Lindahl
New release, new quotes!
commit
|
commitdiff
|
tree
2020-10-06
A
r
t
em
Zhmurov
Remove
u
nused canComp
u
teOnG
p
u(
.
.
.
)
function from
d
e
vice
.
.
.
commit
|
commitdiff
|
tree
2020-10-06
Artem Z
h
murov
S
i
mplif
y
GPU
usag
e
d
e
cision function signatur
e
s
commit
|
commitdiff
|
tree
2020-10-06
Andrey
Al
e
kseenko
Fix logic
in init_ewal
d
_cou
l
omb_f
o
r
ce_table
commit
|
commitdiff
|
tree
2020-10-06
Artem Zhmurov
Use new GPU infrastructure in M
D
Lib test
s
commit
|
commitdiff
|
tree
2020-10-05
Paul B
a
uer
Al
w
ays set DeviceVendor
commit
|
commitdiff
|
tree
2020-10-05
Paul Bauer
Fix debug me
s
sage location
commit
|
commitdiff
|
tree
2020-10-05
P
a
ul Bauer
Add mupar
s
er and
CMake handling
commit
|
commitdiff
|
tree
2020-10-05
Pa
u
l Bauer
Fix doxygen warni
n
gs
commit
|
commitdiff
|
tree
2020-10-01
Szilá
r
d Pá
l
l
Update mdrun-
p
e
r
formance
.
rst
commit
|
commitdiff
|
tree
2020-10-01
Gi
l
les Goua
i
llardet
doc
s
: add ARM+SVE support to th
e
release
notes and
.
.
.
commit
|
commitdiff
|
tree
2020-10-01
G
i
lles Gouaillardet
hardware: detect ARM SVE
a
r
chit
e
c
ture
a
t run
t
ime
commit
|
commitdiff
|
tree
2020-10-01
Gilles Gouaillardet
cmake: use
s
i
md support fo
r
A
RM+SV
E
commit
|
commitdiff
|
tree
2020-10-01
Gilles Gouaillardet
simd: add
s
upport for aarch64+
s
ve (ARM_SVE)
commit
|
commitdiff
|
tree
2020-10-01
Gil
l
es
Gou
a
illardet
simd: rev
a
m
p the (templat
e
d) decr3Hsi
m
d() sub
r
o
u
tine
commit
|
commitdiff
|
tree
2020-10-01
Artem Zh
m
urov
Add missing
i
n
clude into
the tests comparison he
l
per
commit
|
commitdiff
|
tree
2020-10-01
Andrey Alekseenko
Devi
c
e management: Add SYCL DeviceB
u
ffe
r
commit
|
commitdiff
|
tree
2020-09-30
Berk Hess
Move
comput
e
SlowForc
e
s i
n
to
stepWor
k
commit
|
commitdiff
|
tree
2020-09-30
Mar
k
A
b
raham
Fix
w
arnings issued by clang with
n
v
c
c
commit
|
commitdiff
|
tree
2020-09-30
P
ascal Merz
Fix #3
6
55
commit
|
commitdiff
|
tree
2020-09-29
P
aul Bauer
Fix doxy
g
en warnings
commit
|
commitdiff
|
tree
2020-09-29
ejjorda
n
Fa
i
l
g
racefully when nblib
ca
n
not be
b
uilt
commit
|
commitdiff
|
tree
2020-09-29
Joe Jordan
Add nbl
i
b b
a
c
kend: Part
2 of 2
commit
|
commitdiff
|
tree
2020-09-29
Paul Ba
u
er
Add
post s
u
bmit
r
ul
e
s to CI
commit
|
commitdiff
|
tree
2020-09-28
Alan G
r
a
y
Remove si
n
gle-dimen
s
ion l
i
mitatio
n
from GPU
h
alo ex
c
ha
n
g
e
commit
|
commitdiff
|
tree
2020-09-28
Andrey A
l
ekseen
k
o
Fix error in en
s
u
r
e
Refe
r
enceCo
u
nt
commit
|
commitdiff
|
tree
2020-09-27
P
a
s
cal
Merz
Compare trajectorie
s
to refere
n
ce data
commit
|
commitdiff
|
tree
2020-09-23
Mar
k
Abraham
Report name of
m
issi
n
g Ope
n
CL kernels
commit
|
commitdiff
|
tree
2020-09-21
M
a
rk Ab
r
ah
a
m
Wrong logic was use
d
commit
|
commitdiff
|
tree
2020-09-21
P
aul Bauer
Add OpenS
S
H to do
c
s
build images
commit
|
commitdiff
|
tree
2020-09-16
Berk Hess
Remov
e
unnecessary condi
t
ion in DD force buffer resizing
commit
|
commitdiff
|
tree
2020-09-15
Paul Bau
e
r
Fix missin
g
i
nstalled files for O
p
enCL PME
commit
|
commitdiff
|
tree
2020-09-15
Erik Li
n
dahl
Fix minor warnings notice
d
by Intel compilers
commit
|
commitdiff
|
tree
2020-09-15
A
rtem Zhmu
r
ov
F
i
x
VSite out o
f
rang
e
error message
commit
|
commitdiff
|
tree
2020-09-11
Paul
B
auer
Remove
leftover data after refactor
i
ng
commit
|
commitdiff
|
tree
2020-09-11
Pau
l
Bauer
Fix
doxyg
e
n for unused
p
a
ramete
r
s
.
commit
|
commitdiff
|
tree
2020-09-10
Gil
l
es Gouaillardet
fix check_assign
_
interaction
s
_atom()
commit
|
commitdiff
|
tree
2020-09-10
Paul
Bauer
Mi
n
or
fix to the printout
f
or regtest
builds
commit
|
commitdiff
|
tree
2020-09-10
Artem Zhmuro
v
Use d
e
vice inf
o
rmation object inst
e
ad of id whe
n
perform
i
ng
.
.
.
commit
|
commitdiff
|
tree
2020-09-10
Joe Jordan
R
e
place
G
MX_ASSERT with
asser
t
in vectypes
.
h
commit
|
commitdiff
|
tree
2020-09-09
Ar
t
em Zh
m
ur
o
v
Restore G
M
X
_FO
R
CE_UPD
A
TE_DEFAULT_
G
PU envi
r
onment v
a
ri
b
le
.
.
.
commit
|
commitdiff
|
tree
2020-09-08
A
n
dr
e
y Alekseenko
Fix c
l
ang-tidy wa
r
n
ing
commit
|
commitdiff
|
tree
2020-09-08
And
r
ey Al
e
kseenko
Fix
"
G
PU det
e
ction
d
eactivated" mes
s
age w
h
en it
i
n
.
.
.
commit
|
commitdiff
|
tree
2020-09-07
C
hristia
n
Blau
Fix clang-format failure in coordinate
t
r
ansformation
.
h
commit
|
commitdiff
|
tree
2020-09-07
Arte
m
Zhmurov
Fix cl
a
n
g
-format
commit
|
commitdiff
|
tree
2020-09-02
Berk Hess
Move listed and wall forces ou
t
of do_force_l
o
wlevel()
commit
|
commitdiff
|
tree
2020-08-27
M
.
Eric I
r
rgang
Us
e
a
hea
p
object for
i
np
u
trec in
gmx::Mdrunner::mdru
n
ner
(
)
.
commit
|
commitdiff
|
tree
2020-08-20
Alan Gray
Fix bug in Lincs GPU s
e
tup
commit
|
commitdiff
|
tree
2020-08-17
Mark Abraham
F
ix isHostMemory
P
i
n
ned
f
or changes
i
n CUDA 11
.
0
commit
|
commitdiff
|
tree
2020-08-07
Alan
Gray
R
e
vert
"
Modernize STL usag
e
" for f
i
xedCapacityVector
commit
|
commitdiff
|
tree
2020-07-30
M
.
Eric Irrgang
Remove disabled test fo
r
s
uperseded feature
.
commit
|
commitdiff
|
tree
2020-07-27
A
rtem
Z
h
m
urov
Fix cla
n
g-
t
idy warning
commit
|
commitdiff
|
tree
2020-07-24
Simon
Christ
Assertion st
r
i
ng
a
n
d typo fix
commit
|
commitdiff
|
tree
2020-07-07
C
hristian Blau
Move finalising rout
i
n
e
into mtop
commit
|
commitdiff
|
tree
2020-07-07
Paul Bauer
Move density
f
itting to its ow
n
directory
commit
|
commitdiff
|
tree
2020-07-07
K
evi
n
Boyd
Ad
d
stricter ASAN
c
hecks
commit
|
commitdiff
|
tree
2020-06-29
Paul
Bauer
Make everything run on Gi
t
lab
i
nfr
a
structure
.
commit
|
commitdiff
|
tree
2020-06-24
Paul
Bau
e
r
Fix
wa
r
ni
n
g about needing config
.
h
commit
|
commitdiff
|
tree
2020-06-16
A
r
te
m
Zhmu
r
ov
Add miss
i
ng en
d
-of-line
i
n
the GPU update assignment
.
.
.
commit
|
commitdiff
|
tree
2020-06-05
A
r
tem Zhmuro
v
Move calculation
of kinetic
e
nergy to md_support
commit
|
commitdiff
|
tree
2020-06-05
Paul Bauer
Fi
x
failing webp
a
ge b
u
ild
commit
|
commitdiff
|
tree
2020-06-04
A
rtem Zhmur
o
v
Make
a
e
r
ro
r
mess
a
ge les
s
c
onfusing
commit
|
commitdiff
|
tree
2020-06-04
Artem Zhm
u
rov
Update
the
release n
o
t
e
s
commit
|
commitdiff
|
tree
2020-06-03
Berk Hes
s
F
ix m
i
ssing PBC in SHA
K
E
commit
|
commitdiff
|
tree
2020-05-29
Pau
l
Bauer
Add
test for Interact
i
onLi
s
t
commit
|
commitdiff
|
tree
2020-05-25
Artem
Z
hmurov
R
emo
v
e
d
e
pendence on t_mdatoms
f
rom GPU version
of
.
.
.
commit
|
commitdiff
|
tree
2020-05-23
Artem Z
h
murov
Rem
o
ve
d
ependence on t_mdatoms from pu
l
l code
commit
|
commitdiff
|
tree
2020-05-22
Artem Zhmurov
Rem
o
ve dep
e
nd
e
n
ce
of constrain
t
s on t_mdatoms
commit
|
commitdiff
|
tree
2020-05-20
P
a
ul B
a
u
e
r
Fix compile er
r
o
r
s
commit
|
commitdiff
|
tree
2020-05-20
M
.
Er
i
c
I
r
r
gang
Make s
u
re ima
g
es have /usr/bin
/
python
commit
|
commitdiff
|
tree
2020-05-19
Berk Hess
Re
f
actor
print
_
missing
_
interacti
o
n
s
()
commit
|
commitdiff
|
tree
2020-05-19
Paul B
a
uer
R
emo
v
e unnecessary includes of arrayref
.
h
commit
|
commitdiff
|
tree
2020-05-11
Artem
Z
hmurov
Remove th
e
dupl
i
cating note
f
rom the releas
e
notes
commit
|
commitdiff
|
tree
2020-04-29
Artem Zhmurov
Fix the number o
f
steps
c
h
eck when che
c
kp
o
i
n
t i
s
load
e
d
commit
|
commitdiff
|
tree
2020-04-29
Mark
A
b
raham
Fixed
s
everal cl
a
n
g
-tidy issues
commit
|
commitdiff
|
tree
2020-04-16
Artem
Zhmurov
New cool quot
e
commit
|
commitdiff
|
tree
2020-04-01
Mar
k
Abraham
Fix
m
inor bug wit
h
to
o
l
s time-unit conversions
commit
|
commitdiff
|
tree
2020-03-25
Artem Zhmur
o
v
Ma
k
e
use of the
D
eviceStream
M
ana
g
er
commit
|
commitdiff
|
tree
2020-03-20
Artem Zhmurov
Add OpenCL e
r
r
or r
e
porting t
o
GPU regi
o
n timer
commit
|
commitdiff
|
tree
2020-03-19
Szilárd Páll
Fix DLB initial state reporting
commit
|
commitdiff
|
tree
2020-03-18
Mark Abraha
m
Fix unu
s
ed va
r
iable in P
M
E OpenC
L
k
e
r
n
e
l
commit
|
commitdiff
|
tree
2020-03-18
Artem Zhmurov
M
a
ke some dox
y
g
e
n errors more cl
e
ar
commit
|
commitdiff
|
tree
2020-03-13
Mark
A
b
raham
Require padded atom data fo
r
P
M
E G
P
U
commit
|
commitdiff
|
tree
2020-03-11
Szilárd Páll
Reor
g
aniz
e
d
i
pole calculation
in do
_
force
commit
|
commitdiff
|
tree
2020-03-11
Ar
t
em
Z
hmurov
Fi
x
t
h
e post-submit
fail
u
res
commit
|
commitdiff
|
tree
2020-03-11
Christi
a
n Blau
Amend optional
d
o
cumentati
o
n
commit
|
commitdiff
|
tree
2020-03-09
Mark Abra
h
am
Consolidate PME GPU spline i
n
frastructure
commit
|
commitdiff
|
tree
2020-03-07
Paul Bauer
Add clang-tidy s
c
ript
commit
|
commitdiff
|
tree
2020-03-05
Berk Hess
Add InteractionDef
i
n
itions
commit
|
commitdiff
|
tree
2020-03-04
Magnus Lundborg
Separ
a
te
A
WH parameter reading and checking
commit
|
commitdiff
|
tree
2020-03-03
Artem Z
h
muro
v
Move the Pme
P
PC
o
mm
G
pu initializat
i
on from fo
r
cerec
.
.
.
commit
|
commitdiff
|
tree
2020-03-02
P
a
ul Ba
u
e
r
Add Cuda b
u
ild to gitlab C
I
commit
|
commitdiff
|
tree
2020-02-25
Artem Zhmurov
Fix
the RVec to float3 c
o
nversion te
s
t
commit
|
commitdiff
|
tree
2020-02-22
Davi
d
van der Spoel
F
i
xed bug in gmx disre due to inco
n
sistency in
i
nput
.
commit
|
commitdiff
|
tree
2020-02-22
Artem Zhm
u
rov
Add missing hea
d
er and di
s
a
ble failing test
commit
|
commitdiff
|
tree
2020-02-20
Artem Zhmurov
Do not call PME
GPU bu
i
l
d
er in CPU code paths
commit
|
commitdiff
|
tree
2020-02-20
Artem
Z
hmurov
Use GROMACS wrappe
r
s for EXPECT_THROW/NO_THROW in PME
.
.
.
commit
|
commitdiff
|
tree
2020-02-17
Szilárd
P
áll
Add simul
a
ti
o
n workload flag
for dipole co
m
putati
o
n
commit
|
commitdiff
|
tree
2020-02-15
Szilár
d
P
á
ll
Fix gpuudp
a
te and
g
puc
o
mm matrix do
c
s
commit
|
commitdiff
|
tree
2020-02-15
Berk He
s
s
R
e
move 1 pulse DD r
e
que
s
t
commit
|
commitdiff
|
tree
next