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Adapt enum to style convention (modular simulator)
2019-10-23
Pascal Merz
Ad
a
pt enum to style con
v
e
ntion (modular simul
a
tor)
commit
|
commitdiff
|
tree
2019-10-23
Pa
s
cal
M
erz
Small improve
m
ent to E
n
er
g
yE
l
e
ment (modular simula
t
or)
commit
|
commitdiff
|
tree
2019-10-22
Pascal Merz
Fix s
t
op condit
i
on handling (m
o
dular si
m
ulator)
commit
|
commitdiff
|
tree
2019-10-22
P
a
sca
l
M
e
r
z
Fi
x
signal prop
a
gation (modu
l
ar s
i
mulator)
commit
|
commitdiff
|
tree
2019-10-22
Pascal
M
erz
Fix Dom
D
ec s
t
e
p
(modular simula
t
or)
commit
|
commitdiff
|
tree
2019-10-22
Pascal Merz
Fix PmeLoadBal
a
n
c
eHelper ini
t
ia
l
i
z
atio
n
(modular
s
i
m
ulator)
commit
|
commitdiff
|
tree
2019-10-01
P
a
scal Merz
Output
corre
c
t kin
e
tic at last step (modular s
i
m
u
l
a
tor
)
commit
|
commitdiff
|
tree
2019-09-23
P
asc
a
l
Merz
Parrinello-Rahm
a
n for md-vv
commit
|
commitdiff
|
tree
2019-09-23
P
asc
a
l Merz
Parr
i
nell
o
-
R
ahman barostat for
modular simulator
(
le
a
p
.
.
.
commit
|
commitdiff
|
tree
2019-09-23
P
a
s
cal Merz
Zero pressure and virial
t
en
s
ors at beg
i
nning
of
s
tep
commit
|
commitdiff
|
tree
2019-09-23
Pa
s
cal
Mer
z
I
n
troduc
e
F
EP i
n
to
m
odu
l
ar simu
l
ato
r
commit
|
commitdiff
|
tree
2019-09-23
P
ascal Merz
Make C
h
eckpointHel
p
er safer
and
e
a
sie
r
to use
commit
|
commitdiff
|
tree
2019-09-23
P
a
sca
l
Merz
F
ix v
r
escale thermostat integr
a
l (modular
simulator)
commit
|
commitdiff
|
tree
2019-09-20
Pascal Merz
Fix restar
t
s in modular s
i
m
u
lator
commit
|
commitdiff
|
tree
2019-09-20
Pasc
a
l Merz
Fix
d
o
mdec
for md-vv mo
d
ular simulator
commit
|
commitdiff
|
tree
2019-09-20
Pascal Merz
Run
sim
u
lator equiv
a
lence test
s
in double p
r
e
cision
.
.
.
commit
|
commitdiff
|
tree
2019-09-18
Pascal
Merz
v-rescale thermos
t
at for modular si
m
u
lator
commit
|
commitdiff
|
tree
2019-09-17
Pa
s
cal
Merz
Minor tweaks to sum_dhdl and setCurrentL
a
mbdasLocal
commit
|
commitdiff
|
tree
2019-09-17
Pascal
Merz
F
ix
p
osition pinning for m
o
dul
a
r simulator
commit
|
commitdiff
|
tree
2019-09-17
Pascal Merz
Fix modu
l
ar simulator MPI bugs
commit
|
commitdiff
|
tree
2019-09-17
Pas
c
al Merz
Mak
e
mo
d
ular simulator the
d
e
faul
t
code path for md
.
.
.
commit
|
commitdiff
|
tree
2019-09-17
Pascal Merz
Fix fo
r
ce element
commit
|
commitdiff
|
tree
2019-09-17
Pasca
l
M
e
rz
E
na
b
le checkpoin
t
ing f
o
r modular si
m
ulator
commit
|
commitdiff
|
tree
2019-09-15
P
a
scal Merz
Intr
o
duce
t
he
modular s
i
mulator
commit
|
commitdiff
|
tree
2019-09-12
Pascal Merz
Update modul
a
r simulat
o
r tests
commit
|
commitdiff
|
tree
2019-09-10
Pa
s
ca
l
M
erz
C
o
mpositeSimulato
r
Elem
e
nt for th
e
modular simula
t
or
commit
|
commitdiff
|
tree
2019-09-10
Pa
s
cal Merz
Coordina
t
e P
r
opagators
commit
|
commitdiff
|
tree
2019-09-10
Pascal Merz
S
t
ate
P
r
op
a
gat
o
rData: Introduced const box accessor
.
.
.
commit
|
commitdiff
|
tree
2019-09-10
Pascal Me
r
z
Add trivial const
qualifiers to s
h
ellfc and En
e
rg
y
Output
commit
|
commitdiff
|
tree
2019-09-10
P
a
s
c
a
l
Merz
Constraint element for t
h
e m
o
d
ular
simulator
commit
|
commitdiff
|
tree
2019-09-09
Pascal Mer
z
Domain decompo
s
ition
a
nd PME l
o
ad balancing
for mo
d
ular
.
.
.
commit
|
commitdiff
|
tree
2019-09-07
Pascal Merz
Make pme_load
b
al_d
o
(
)
independent o
f
t
_
s
tate
commit
|
commitdiff
|
tree
2019-09-07
Pascal
M
e
rz
F
o
rceElem
e
nt
and ShellF
C
Element for t
h
e modular si
m
u
l
at
o
r
commit
|
commitdiff
|
tree
2019-09-06
Pascal M
e
r
z
Comput
e
G
lobalsElement for t
h
e modular si
m
u
l
a
tor
commit
|
commitdiff
|
tree
2019-09-05
P
a
scal Mer
z
I
n
troduce to
p
ology
class for modu
l
ar simulator
commit
|
commitdiff
|
tree
2019-09-05
Pascal
M
e
r
z
Rename MicroState to StateProp
a
g
atorData for
m
odular
.
.
.
commit
|
commitdiff
|
tree
2019-09-05
Pas
c
al M
e
rz
A
dapt inherit
a
nce int
e
nda
t
ion to uncrustify
commit
|
commitdiff
|
tree
2019-09-05
Pa
s
c
al Merz
Make
do_constrain_first() ind
e
pendent
of
t
_st
a
te
commit
|
commitdiff
|
tree
2019-09-03
Pasca
l
Merz
I
nt
r
oduce e
n
ergy elem
e
nt for m
o
dular
s
imulator
commit
|
commitdiff
|
tree
2019-08-28
Pascal Merz
Introd
u
ce Mic
r
oS
t
ate for modular simula
t
or
commit
|
commitdiff
|
tree
2019-08-28
P
a
scal Merz
Introduc
e
signallers
for modular
i
nte
g
ra
t
or
commit
|
commitdiff
|
tree
2019-08-28
P
a
sca
l
Merz
Introduce the ma
i
n modular sim
u
lator
interf
a
ces and
.
.
.
commit
|
commitdiff
|
tree
2019-08-12
Pascal Merz
Use new seten
v
functio
n
fo
r
en
e
rg
y
o
utp
u
t test
commit
|
commitdiff
|
tree
2019-08-05
P
ascal Merz
Add trivial
const qualifi
e
r
to energy output
commit
|
commitdiff
|
tree
2019-08-05
Pascal Merz
Add const gette
r
to MDAtoms
commit
|
commitdiff
|
tree
2019-08-05
P
a
scal Mer
z
M
o
ve o
w
nershi
p
of kinetic
ene
r
gy object to ISi
m
ul
a
tor
commit
|
commitdiff
|
tree
2019-08-05
Pas
c
a
l
M
e
rz
Added Sim
u
l
ator comparison tes
t
commit
|
commitdiff
|
tree
2019-08-05
Pascal Me
r
z
In
t
roduce Simulato
r
B
uilder
commit
|
commitdiff
|
tree
2019-08-02
Pascal
Merz
Int
r
oduce Sim
u
lator base class
commit
|
commitdiff
|
tree
2019-07-31
Pascal
M
erz
Rena
m
e
S
i
mulator to Legac
y
Simulator
commit
|
commitdiff
|
tree
2019-07-11
Pascal Merz
Ge
t
r
id
o
f
c
lan
g
-tidy
wa
r
ning in do_md/rerun/mimic
commit
|
commitdiff
|
tree
2019-07-11
Pas
c
al
Merz
Remove depen
d
ence
of c
o
mpute_
g
lobals on t_state
commit
|
commitdiff
|
tree
2019-07-11
Pascal Merz
Make r
e
lax_
s
he
l
l_flexcon
independent
of t_state
commit
|
commitdiff
|
tree
2019-07-09
P
asca
l
M
e
rz
Added trivial
c
o
nst qual
i
f
i
e
r to relax_shell_flexcon()
commit
|
commitdiff
|
tree
2019-07-09
Pas
c
al Mer
z
Co
n
st qualifier fo
r
forces in update_coo
r
ds
commit
|
commitdiff
|
tree
2019-07-01
Pasca
l
Merz
F
i
x
m
o
dule detection for phys
i
cal validation
commit
|
commitdiff
|
tree
2019-06-24
Pasc
a
l Merz
M
ake glo
b
al t
o
pology c
o
nstant
i
n
t
r
aj
e
ctory writing
commit
|
commitdiff
|
tree
2019-05-27
Pasc
a
l Mer
z
Cle
a
n u
p
rename
d
simu
l
ato
r
.
h f
i
le
commit
|
commitdiff
|
tree
2019-05-25
Pascal Merz
Remove depende
n
ce
o
f
mdo
u
tf_write_to_t
r
ajectory_files
.
.
.
commit
|
commitdiff
|
tree
2019-05-25
Pascal Merz
Renam
e
Int
e
grator clas
s
commit
|
commitdiff
|
tree
2019-05-16
Pas
c
al Merz
Use Python
3
commit
|
commitdiff
|
tree
2018-12-10
P
a
s
cal Merz
Fail
p
r
oo
f
signal conversion
commit
|
commitdiff
|
tree
2018-09-26
Pascal Merz
(Re-)
f
ix typo in DD load balancing p
r
inting
commit
|
commitdiff
|
tree
2018-09-25
Pa
s
c
al Merz
Re
m
ove obsol
e
t
e br
a
ce
s
in do_md()
commit
|
commitdiff
|
tree
2018-09-25
Pascal
Mer
z
R
e
move rerun
from do_md
commit
|
commitdiff
|
tree
2018-09-25
Pascal
Merz
Rem
o
ve
u
nnece
s
sary fu
n
ct
i
onality from
d
o_r
e
run
commit
|
commitdiff
|
tree
2018-09-25
Pascal Merz
Prepare
r
eru
n
commit
commit
|
commitdiff
|
tree
2018-09-21
Pascal Merz
Make CGLO_CHECK_
N
UMBER_OF_B
O
NDED_INTERACTIO
N
S requ
i
re
.
.
.
commit
|
commitdiff
|
tree
2018-09-18
Pascal Merz
Documenta
t
i
o
n fix: Rerun and n
s
tlist
commit
|
commitdiff
|
tree
2018-09-18
P
a
scal Merz
Introduce stop handler
commit
|
commitdiff
|
tree
2018-09-18
Pascal Merz
Int
r
oduce ch
e
ckpoint handler
commit
|
commitdiff
|
tree
2018-09-18
Pascal Merz
Int
r
oduce res
e
t
h
andler
commit
|
commitdiff
|
tree
2018-09-17
Pa
s
cal Merz
F
ix
t
ypo in DD load balancing
printing
commit
|
commitdiff
|
tree
2018-09-11
Pascal
Merz
Added
t
rivial const qualifiers
commit
|
commitdiff
|
tree
2018-09-11
Pascal Merz
Ini
t
ialize
t
ota
l
_vir
a
nd pres in in
i
t_md
commit
|
commitdiff
|
tree
2018-04-04
Pascal Merz
Mov
e
checkNumberOfBondedInterac
t
i
o
ns
commit
|
commitdiff
|
tree
2017-12-21
Pascal Merz
Docu
m
entation and fixes for physic
a
l validation
commit
|
commitdiff
|
tree
2017-11-22
Pascal Merz
Proof o
f
concept: Physical
v
a
li
d
at
i
on suite
commit
|
commitdiff
|
tree