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Fix gmx density for non-mass calculations
2018-01-01
Eri
k
Lindahl
Fix gmx densit
y
fo
r
non-mass calcu
l
ations
commit
|
commitdiff
|
tree
2017-10-30
David van
de
r
Spoel
Fixed mdp ou
t
put from electric field
c
ode
.
commit
|
commitdiff
|
tree
2017-10-27
A
l
ek
s
ei Iupinov
Remov
e
unused PME
g
rid dump de
b
u
g functi
o
ns
commit
|
commitdiff
|
tree
2017-10-17
David va
n
der Spoel
Fixed missing ent
r
ies in nrnb arrays
.
commit
|
commitdiff
|
tree
2017-09-04
Teemu
M
u
rto
l
a
Intro
d
uce self
-
pairs sear
c
h i
n
nbsearch
commit
|
commitdiff
|
tree
2017-09-04
Teemu Murtola
Re
f
a
cto
r
an
a
lysi
s
nbsea
r
ch
tests
commit
|
commitdiff
|
tree
2017-08-09
R
o
land
Schulz
U
s
e
t
able
E
wal
d
for Skylake
commit
|
commitdiff
|
tree
2017-08-03
David van der Spoel
Fixe
d
bug
in gmx disres indexing arrays
.
commit
|
commitdiff
|
tree
2017-08-02
Berk Hess
Make loop
variables in
o
rires
.
c
p
p local
commit
|
commitdiff
|
tree
2017-08-02
Berk Hess
Add check for
n
r
of orientation restr
a
ints
commit
|
commitdiff
|
tree
2017-07-19
D
a
vid van de
r
Spo
e
l
F
ixed test-order depende
n
cy in gmxpreprocess tests
.
commit
|
commitdiff
|
tree
2017-07-19
David
van
der Spoel
Fix
non
-
reproducabilit
y
of clustsize tests
.
commit
|
commitdiff
|
tree
2017-04-29
Carsten Kutzner
M
inor
h
eader file clea
n
up in
ED,
IMD and CompEL modules
commit
|
commitdiff
|
tree
2017-04-22
M
a
rk Abraham
Clea
n
up memo
r
y
usage
w
i
t
h oenv and
xvg writing
commit
|
commitdiff
|
tree
2017-03-13
Teem
u
Murtola
I
mp
r
o
v
e o
p
tion supp
o
rt & te
s
ts
for key-value trees
commit
|
commitdiff
|
tree
2017-03-13
T
e
e
mu Murt
o
la
Remove m
a
nual alignm
e
n
t from
InMemorySerializer
commit
|
commitdiff
|
tree
2017-03-12
Te
e
mu Murtola
Consistent TextWriter trailing wh
i
te
s
pace handling
commit
|
commitdiff
|
tree
2017-03-12
D
a
v
id van der Spoel
Added tests for
gmx clustsize
.
commit
|
commitdiff
|
tree
2017-03-04
Ve
d
ran Mil
e
tić
D
o
cum
e
nt that
w
e now support AMD GCN on Mesa/LL
V
M
commit
|
commitdiff
|
tree
2017-02-28
Berk Hess
Add load
balance fr
a
ct
i
on
t
o D
L
B print
commit
|
commitdiff
|
tree
2017-02-28
Teemu Mu
r
to
l
a
M
ore
documentation for ke
y
-value trees
commit
|
commitdiff
|
tree
2017-02-27
Da
v
id van der Sp
o
el
Fixes bug in gmx
solvate with -
s
he
l
l that yielded 0
.
.
.
commit
|
commitdiff
|
tree
2017-02-09
Aleksei Iupinov
Add initialization to
dvdlambda
in bonded fo
r
ces
t
ests
commit
|
commitdiff
|
tree
2017-02-08
Mark Abraham
Remove
docs fo
r
un
i
mplem
e
nted trjconv -
c
lustercenter
commit
|
commitdiff
|
tree
2017-02-02
Mark Abr
a
ham
Clarify use of tau-p and
pcoupltype
commit
|
commitdiff
|
tree
2017-01-30
Mark Abraham
Don
'
t print
i
n
valid performan
c
e
data
commit
|
commitdiff
|
tree
2016-12-14
M
ark Abraham
Fix misleadin
g
p
a
ra
l
lelization
docs
for gmx wh
a
m
commit
|
commitdiff
|
tree
2016-11-21
Aleksei Iupino
v
M
o
v
e hard
c
oded PME gri
d
i
n
dexing c
o
nstants int
o
header
commit
|
commitdiff
|
tree
2016-11-18
David
v
an der Spoel
Added
f
irst tests
o
f b
o
nded fo
r
c
e
functions
.
commit
|
commitdiff
|
tree
2016-11-16
Mar
k
Abraha
m
Enhan
c
ed ArrayRef
commit
|
commitdiff
|
tree
2016-11-16
Mark Abraham
Cr
e
ated pa
d
d
e
dvecto
r
.
h
commit
|
commitdiff
|
tree
2016-10-24
Teemu Murtola
E
lectric field
m
d
p
p
arsi
n
g u
s
ing options
commit
|
commitdiff
|
tree
2016-10-24
Teem
u
Murtola
Support for de
f
ault values from Opti
o
ns t
o
KeyV
a
lueTree
commit
|
commitdiff
|
tree
2016-10-14
Be
r
k
H
ess
Apply Ber
e
ndsen P-couple at nstpcouple
s
teps
commit
|
commitdiff
|
tree
2016-10-14
Teemu Mu
r
to
l
a
Use gmx_mt
o
p_t in selec
t
ions
,
part 3
commit
|
commitdiff
|
tree
2016-10-13
Teemu M
u
rtola
Getter f
o
r mapped path
s
from KeyValueTr
e
eTransform
commit
|
commitdiff
|
tree
2016-10-08
Berk Hess
A
d
d
rea
d
ConfAndTopolog
y
commit
|
commitdiff
|
tree
2016-10-03
Philip Loche
EW3DC for
n
on-neut
r
al systems
commit
|
commitdiff
|
tree
2016-10-01
B
e
rk Hess
Fix
inputrec initia
l
i
zation
i
n 4 to
o
ls
commit
|
commitdiff
|
tree
2016-09-29
B
e
rk Hess
Us
e
std::vector in
t
_
state
commit
|
commitdiff
|
tree
2016-09-29
Berk He
s
s
Add
f
lags for optional t_ato
m
s entries
commit
|
commitdiff
|
tree
2016-09-20
Berk
Hess
Remove
s
tate
d
u
plica
t
i
o
n in serial
runs
commit
|
commitdiff
|
tree
2016-09-20
D
a
v
i
d
van der
Spoel
Made correlation function routine use std::vector
commit
|
commitdiff
|
tree
2016-09-16
Berk Hess
Made distance restraints work with threads
a
n
d DD
commit
|
commitdiff
|
tree
2016-09-15
Aleksei Iupinov
Move th
e
PME Ewald coeffi
c
ients to the PME st
r
ucture
commit
|
commitdiff
|
tree
2016-09-13
Roland Schulz
T
idy: m
o
dernize-use-emplace
commit
|
commitdiff
|
tree
2016-09-13
Berk
H
ess
Cha
n
ge ED and swa
p
state to pointer
s
i
n t_sta
t
e
commit
|
commitdiff
|
tree
2016-09-11
V
e
dran Miletić
Print Op
e
nCL error string ins
t
ead of
erro
r
co
d
e
commit
|
commitdiff
|
tree
2016-09-10
Berk Hess
R
emove continuation f
r
om convert_t
p
r
commit
|
commitdiff
|
tree
2016-09-10
A
l
eksei
I
upinov
Fix PME da
t
a
destructor no
t
bei
n
g
c
a
l
led
commit
|
commitdiff
|
tree
2016-09-05
David van der Spoel
Merg
e
"Merge
bra
n
ch release-2016"
commit
|
commitdiff
|
tree
2016-08-27
Szilárd P
á
ll
Mak
e
ASAN/TSAN/MSAN
b
uild type
s
easier
to d
i
scover
commit
|
commitdiff
|
tree
2016-08-27
Mark A
b
raham
St
o
p using gm
x
_fatal
i
n gromp
p
commit
|
commitdiff
|
tree
2016-08-27
Teemu Murtola
Su
p
port KeyValueTree
obj
e
cts in refdata
commit
|
commitdiff
|
tree
2016-08-27
B
e
rk
He
s
s
Reduce rou
n
ding
e
r
r
ors i
n
SETTLE
commit
|
commitdiff
|
tree
2016-08-27
Rola
n
d Schulz
Fix
b
u
ild w
i
th GMX_USE_TNG=off
commit
|
commitdiff
|
tree
2016-08-24
David va
n
der Spoel
Ad
d
e
d
documentati
o
n for shell poten
t
ials
.
commit
|
commitdiff
|
tree
2016-07-31
Da
v
id van
der Spoe
l
Merge "
M
erge
branch release-5-1 into release-2
0
1
6"
.
.
.
commit
|
commitdiff
|
tree
2016-07-08
Vedr
a
n Miletić
P
rin
t
working dir befo
r
e command line
commit
|
commitdiff
|
tree
2016-07-08
David van der Spoe
l
M
e
rge "Merge bran
c
h r
e
leas
e
-5-1 into
r
elea
s
e-2016"
.
.
.
commit
|
commitdiff
|
tree
2016-07-08
Szilár
d
Páll
U
s
e
r guide cla
r
ificati
o
ns
commit
|
commitdiff
|
tree
2016-07-07
Berk Hess
Relax pull PBC check
commit
|
commitdiff
|
tree
2016-07-03
Berk Hess
Add
g
r
o
m
p
p
che
c
k for pull group
commit
|
commitdiff
|
tree
2016-06-27
David v
a
n der Spoel
Made gmx dos work again
.
commit
|
commitdiff
|
tree
2016-06-26
Berk Hess
Fix v
s
i
te b
u
g wit
h
MPI+OpenMP
commit
|
commitdiff
|
tree
2016-06-21
B
e
r
k Hess
Fix bug with
fbposres
+
M
P
I+O
p
e
nMP
commit
|
commitdiff
|
tree
2016-05-30
Be
r
k
Hess
Add grompp
c
heck for
unbound
a
toms
commit
|
commitdiff
|
tree
2016-05-08
Mar
k
Abraham
Fix
c
onstan
t
s
,
unit
s
and conv
e
r
s
i
on fac
t
ors
commit
|
commitdiff
|
tree
2016-03-23
David
va
n
der Spoel
Removed srenew that wa
s
making
a
rra
y
s
m
alle
r
in
c
orrectly
.
commit
|
commitdiff
|
tree
2016-01-20
David
van der Spoel
C
ouple
of new q
u
otes
commit
|
commitdiff
|
tree
2015-12-09
Teemu Murto
l
a
Sp
l
it
t
xtdump
.
*, part 1
commit
|
commitdiff
|
tree
2015-12-05
M
agnus Lund
b
org
Write forces and velocit
i
e
s
to
c
ompressed TNG
.
commit
|
commitdiff
|
tree
2015-11-24
David van der Spoel
Fi
x
es n
e
wly in
t
roduced bug in make_ndx
.
commit
|
commitdiff
|
tree
2015-11-23
David van der Spoel
Moved domd
e
c
structures out of commrec
.
h
.
commit
|
commitdiff
|
tree
2015-11-22
David v
a
n
der
S
poel
Cleanups in
legacy
h
eader/t
y
pes/
c
omm
r
e
c
.
h
commit
|
commitdiff
|
tree
2015-11-21
D
a
vid v
a
n
der Spoel
Merged l
e
gacyhead
e
rs/typ
e
s/qmmmrec
.
h into md
l
i
b/qmmm
.
h
commit
|
commitdiff
|
tree
2015-11-20
Davi
d
v
a
n der Spoel
Mo
v
ed legacyhea
d
ers/types/g
r
oup
.
h t
o
mdtypes
.
commit
|
commitdiff
|
tree
2015-11-20
Da
v
id
van der Spoel
Merged legacyheaders/types/ns
.
h
a
n
d nb
l
ist
.
h to mdtyp
e
s
.
.
.
commit
|
commitdiff
|
tree
2015-11-20
David van de
r
S
p
oel
Combine enum
s
.
h and
n
ames*
.
commit
|
commitdiff
|
tree
2015-11-20
Mark Abraham
Split wal
l
cycle int
e
rf
a
ce
commit
|
commitdiff
|
tree
2015-11-20
Davi
d
van der Spo
e
l
Merged legacyheaders/nr
n
b
.
h and types/nrnb
.
h
to gmxlib
.
commit
|
commitdiff
|
tree
2015-11-20
David van der Spoel
Moved
m
datom
.
h
from legacyheader/types to mdtypes
.
commit
|
commitdiff
|
tree
2015-11-15
David van de
r
Spoel
Merged legacyheaders/ty
p
es/state
.
h
i
nto mdtypes/st
a
te
.
h
commit
|
commitdiff
|
tree
2015-11-14
Berk Hes
s
Optimi
z
ed
the bon
d
ed thread forc
e
reduct
i
o
n
commit
|
commitdiff
|
tree
2015-11-13
D
avid van der Sp
o
el
Moved genborn
.
h
to mdlib
commit
|
commitdiff
|
tree
2015-11-12
D
avid va
n
der Spoel
M
oved tx
t
dump
.
*
t
o fileio
.
commit
|
commitdiff
|
tree
2015-11-12
David van der Sp
o
el
M
oved copyrite
.
* to fileio from gmxlib and lega
c
yhe
a
ders
.
commit
|
commitdiff
|
tree
2015-10-18
David van d
e
r
Spo
e
l
M
oved pbc/cut-off rel
a
t
e
d utilities from typed
e
fs t
o
.
.
.
commit
|
commitdiff
|
tree
2015-10-15
Dav
i
d
va
n
der Spoel
F
r
eed memory in
l
e
gacy s
t
atistics routines
.
commit
|
commitdiff
|
tree
2015-10-15
Berk Hess
Fixed nbnxn_4xN performance regressi
o
n
commit
|
commitdiff
|
tree
2015-10-07
Berk H
e
ss
Fix bugs with intermol
i
nteractio
n
s
a
n
d
D
D
commit
|
commitdiff
|
tree
2015-10-03
David van der Spoel
Removed
simple
.
h
commit
|
commitdiff
|
tree
2015-10-02
David va
n
der
S
p
oel
Remo
v
ed simple
.
h from nb_kernel_avx
_
2
5
6
_XX
commit
|
commitdiff
|
tree
2015-10-01
T
eemu Murtola
Ena
b
le t
i
m
e uni
t
and s
e
l
ections in ICommandLineOptions
M
o
d
ule
commit
|
commitdiff
|
tree
2015-09-30
Dav
i
d van de
r
Spoel
Rem
o
v
e
d types
/
nblist
.
h an
d
types/
n
s
grid
.
h
from
typ
e
defs
.
h
commit
|
commitdiff
|
tree
2015-09-30
David
van der S
p
oel
Rem
o
ved types/mdatom
.
h fr
o
m typedefs
.
h
commit
|
commitdiff
|
tree
2015-09-29
Da
v
id van de
r
S
p
oel
Remov
e
d type
s
/
i
n
p
u
trec
.
h from typedefs
.
h and releted
.
.
.
commit
|
commitdiff
|
tree
2015-09-29
M
ark Abraham
Clean up of t
a
bles co
d
e
commit
|
commitdiff
|
tree
2015-09-29
Mark Abra
h
am
M
ove tables
.
c
to
n
ew module an
d
C++
commit
|
commitdiff
|
tree
2015-09-29
David van der S
p
oel
Fixes bug
i
n the
com
p
ut
a
tion of Coeffi
c
ie
n
t of
Thermal
.
.
.
commit
|
commitdiff
|
tree
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