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Fixes for Solaris
2017-09-05
Mark Ab
r
aham
F
ix
e
s
for Solari
s
commit
|
commitdiff
|
tree
2017-09-03
Ma
r
k Abra
h
am
Fix compiler flags for us
i
n
g
MKL
commit
|
commitdiff
|
tree
2017-09-03
M
ark A
b
raham
Mer
g
e branch
r
eleas
e
-5-1
into release-2016
commit
|
commitdiff
|
tree
2017-08-25
Mark Ab
r
aham
F
i
x
f
lat-bottomed position restraints
with mult
i
ple
.
.
.
commit
|
commitdiff
|
tree
2017-08-21
Ma
r
k Abraham
Fix
compi
l
at
i
on issu
e
s with ARM SIMD
commit
|
commitdiff
|
tree
2017-08-18
V
edran Mile
t
ić
I
mpr
o
ve the "files n
o
t pres
e
nt" error
m
essage
commit
|
commitdiff
|
tree
2017-08-15
David van der
Spoel
Work
e
d
aroun
d
missing OpenMP implemen
t
ation i
n
or
i
r
es
.
commit
|
commitdiff
|
tree
2017-08-15
Mark Abraham
Merg
e
b
r
a
n
ch releas
e
-5-
1
into relea
s
e-
2
016
commit
|
commitdiff
|
tree
2017-08-15
Jiri Kr
a
u
s
C
U
DA 9/Volta
s
u
ppo
r
t for the nonbond
e
d mo
d
ule
commit
|
commitdiff
|
tree
2017-08-15
Mark Abraham
Fix value
o
f Ew
a
ld s
h
ift
commit
|
commitdiff
|
tree
2017-08-06
Mark A
b
raham
Removed unused host-side
a
llocation c
o
de
commit
|
commitdiff
|
tree
2017-08-03
B
e
rk Hess
Add check for
n
r of ori
e
ntation
r
estraints
commit
|
commitdiff
|
tree
2017-08-03
Be
r
k
He
s
s
F
ix bugs with or
i
entation
r
estraints
commit
|
commitdiff
|
tree
2017-08-03
Carsten Kutzne
r
Added
m
issing
.
m
dp f
i
le documentation for the
enforced
.
.
.
commit
|
commitdiff
|
tree
2017-06-28
Mark
A
brah
a
m
Fix
sp
e
c
ification for gcc-6
commit
|
commitdiff
|
tree
2017-06-27
Mark Abraham
M
i
n
o
r improve
m
ent
s
t
o
t
est configs
commit
|
commitdiff
|
tree
2017-06-12
Berk Hess
Disable P
M
E tuni
n
g
with the group scheme
commit
|
commitdiff
|
tree
2017-05-29
Vedran Miletić
Standar
d
iz
e
us
e
of |Gromacs| in reST do
c
s
commit
|
commitdiff
|
tree
2017-05-26
Mark
Abraha
m
Test invsixthroot fu
n
ction as int
e
nded
commit
|
commitdiff
|
tree
2017-05-15
Ma
r
k
Abraha
m
U
pdat
e
d
use
of gcc-5 specifiers
commit
|
commitdiff
|
tree
2017-05-14
Justi
n
Lemkul
Clar
i
f
ications to
e
ditconf help
t
e
xt
.
commit
|
commitdiff
|
tree
2017-05-09
Mark Abr
a
ham
Fix for
m
atting of MKL cmake doc
s
commit
|
commitdiff
|
tree
2017-04-19
Berk
H
e
ss
F
i
x unused SIMD PME table ker
n
el
commit
|
commitdiff
|
tree
2017-04-17
Ma
r
k Abraham
Propos
e
a
p
o
st-submit
matrix
commit
|
commitdiff
|
tree
2017-03-22
M
ark Abra
h
a
m
Add section
t
o
us
e
r guid
e
for managing simul
a
tions
commit
|
commitdiff
|
tree
2017-03-14
Mark Abr
a
ham
Bumpe
d
vers
i
o
n
t
o prepare for next patch release
commit
|
commitdiff
|
tree
2017-03-13
Mark Ab
r
aham
Version 2016
.
3
commit
|
commitdiff
|
tree
2017-03-13
Ake
S
andgr
e
n
Fix
tune_pme detection of GPU
s
u
p
por
t
commit
|
commitdiff
|
tree
2017-03-13
Ake Sandgren
Fix spacing in tu
n
e_pme ca
l
l to thread-mpi m
d
ru
n
commit
|
commitdiff
|
tree
2017-03-09
Szi
l
á
rd Páll
Fix m
d
run
h
a
n
gi
n
g upon exit with sep PME
r
ank
s
commit
|
commitdiff
|
tree
2017-03-07
Mark Abr
a
ham
Fi
x
minor issues in gmx traj -av
-af
commit
|
commitdiff
|
tree
2017-03-04
Da
v
i
d
v
an der Spoel
Removes
r
o
gu
e
print
i
ng to xvg file in
g
mx mindi
s
t
commit
|
commitdiff
|
tree
2017-03-04
M
ark Abraham
F
i
x
es
f
or
x
l compile
r
s 13
.
1
.
5 on Power
8
commit
|
commitdiff
|
tree
2017-02-15
Mark Abraham
Merg
e
branch release-5-1 into release-
2
016
commit
|
commitdiff
|
tree
2017-02-10
Ma
r
k A
b
raham
Corrected outp
u
t
o
f gmx do_dssp -sc
commit
|
commitdiff
|
tree
2017-02-07
Vedran
Mile
t
ić
Document running C
l
ang
s
t
ati
c
a
n
alyzer manua
l
ly
commit
|
commitdiff
|
tree
2017-02-07
Mark Abraham
Bump
e
d versio
n
to pr
e
par
e
f
o
r next pa
t
ch
r
elease
commit
|
commitdiff
|
tree
2017-02-07
Mark
A
braham
Version 2016
.
2
commit
|
commitdiff
|
tree
2017-02-07
Ber
k
Hess
Add mdp option
c
h
eck with decoupled modes
commit
|
commitdiff
|
tree
2017-02-05
Mark Abra
h
am
Me
r
g
e
branc
h
release-5-1 int
o
r
elease-2016
commit
|
commitdiff
|
tree
2017-01-31
M
a
r
k
Abraham
Mer
g
e b
r
a
n
ch rele
a
s
e
-5-1 into release-2016
commit
|
commitdiff
|
tree
2017-01-22
M
ark
Abraham
F
i
xed gmx rmsf -q -oq
.
commit
|
commitdiff
|
tree
2017-01-20
Be
r
k
Hess
Disallow overwriti
n
g of
dihedral type
9
commit
|
commitdiff
|
tree
2017-01-04
Mark Abraha
m
S
t
o
p trying to use objdump --reloc on Mac
commit
|
commitdiff
|
tree
2017-01-03
Mark Abraham
Merge b
r
an
c
h release-
5
-1
i
n
t
o
r
e
lease-2016
commit
|
commitdiff
|
tree
2016-12-20
M
a
rk Abraham
C
orrected do
c
umentation ab
o
ut eigenvalue handling
commit
|
commitdiff
|
tree
2016-12-10
Teemu
M
urtola
Build
s
cript
s
for
improve
d
release workflow
commit
|
commitdiff
|
tree
2016-12-09
Szilárd Páll
Turn off hwlo
c
suppor
t
w
hen static lib
f
ound
commit
|
commitdiff
|
tree
2016-12-08
T
e
e
mu Murtola
F
i
x possible m
e
mory e
r
r
or wi
t
h
l
ong select
i
ons
commit
|
commitdiff
|
tree
2016-12-07
Teemu Murtola
Fix
use of position variables w
i
th plus/me
r
ge
commit
|
commitdiff
|
tree
2016-12-07
Mark Abraham
Fix memor
y
handl
i
n
g
in gmx dum
p
of TNG
files
commit
|
commitdiff
|
tree
2016-12-05
Mark Ab
r
ah
a
m
R
emove undue nar
r
o
wing of i
n
t
eger in TNG readin
g
commit
|
commitdiff
|
tree
2016-12-01
M
a
r
k Abraham
Fix
m
inor trjc
o
nv bug
commit
|
commitdiff
|
tree
2016-11-16
Carsten Kutz
n
er
In
c
r
e
ase
d
the defau
l
t
reset step to 1
5
00 in gmx tune_p
m
e
commit
|
commitdiff
|
tree
2016-11-08
Dan Horák
Fix x86 conditional
commit
|
commitdiff
|
tree
2016-10-28
Mark
A
br
a
ham
Bu
m
ped v
e
rsion to
p
rep
a
r
e
f
o
r
next pa
t
ch
r
elease
commit
|
commitdiff
|
tree
2016-10-28
Ma
r
k Abraham
Version 2016
.
1
commit
|
commitdiff
|
tree
2016-10-28
Berk He
s
s
DLB can
now turn o
f
f
,
w
hen
slower
commit
|
commitdiff
|
tree
2016-10-28
S
z
ilárd Pál
l
GPU-rel
a
ted addit
i
o
n
s to the inst
a
ll/user
guide
commit
|
commitdiff
|
tree
2016-10-28
Berk Hess
Fix D
L
B
timin
g
with
C
UDA
and
O
p
enC
L
commit
|
commitdiff
|
tree
2016-10-27
Szil
á
rd Páll
Make
-
c
l-fast-relaxed-math defau
l
t
commit
|
commitdiff
|
tree
2016-10-21
Mark
Abraham
Upd
a
t
e
ins
t
a
ll
guide
commit
|
commitdiff
|
tree
2016-10-18
Ma
r
k Abraha
m
Fix SIMD
suggestion for VMX
commit
|
commitdiff
|
tree
2016-10-12
B
erk Hess
Fixed
p
rint bug in gmx wham
commit
|
commitdiff
|
tree
2016-10-11
James W
.
Barne
t
t
fix
t
ypo
commit
|
commitdiff
|
tree
2016-10-07
Mark Abra
h
am
Add scrip
t
for Jenk
i
ns regressiontest upd
a
t
e job
commit
|
commitdiff
|
tree
2016-10-06
Carlo
Cam
i
l
l
oni
Always update mdatoms when do
i
n
g
energ
y
minimisation
commit
|
commitdiff
|
tree
2016-10-03
Mark Abraham
Merge branch release-
5
-1 into
release
-
2016
commit
|
commitdiff
|
tree
2016-10-03
Mark Abr
a
ham
Replace
use
of dep
r
ecated rea
d
dir_r
commit
|
commitdiff
|
tree
2016-09-28
Joch
e
n Hu
b
Fix
e
d
b
ug i
n
gmx wh
a
m f
o
r reading pullx files
.
commit
|
commitdiff
|
tree
2016-09-27
David van
d
er
S
poel
F
i
x
ed script
x
plor
2
gmx
.
pl to work wi
t
h GMXDATA
commit
|
commitdiff
|
tree
2016-09-08
Mark A
b
raham
Merge branch
r
elease
-
5-1 into
r
elease-2016
commit
|
commitdiff
|
tree
2016-09-08
Mark Abra
h
am
Bu
m
ped pat
c
h number
to prep
a
re for futur
e
5
.
1
.
5
r
elease
commit
|
commitdiff
|
tree
2016-09-07
Mark Abraham
Ve
r
sion 5
.
1
.
4
commit
|
commitdiff
|
tree
2016-09-07
Ma
r
k Abraham
R
e
mo
v
ed HIS1 fro
m
oplsaa and charmm d
e
finitions
commit
|
commitdiff
|
tree
2016-09-06
M
a
rk Abr
a
ham
Work ar
o
und glibc 2
.
23 with CUDA
commit
|
commitdiff
|
tree
2016-09-02
Berk Hess
Fi
x
Parrinello-Rahman with
nstpcou
p
le>1
commit
|
commitdiff
|
tree
2016-08-30
Berk
H
es
s
Make virial
r
eproducible
commit
|
commitdiff
|
tree
2016-08-15
Mark A
b
raham
Fix
e
s for BG/
Q
pl
a
t
f
o
rm f
i
l
es a
n
d in
s
tall
g
u
ide
commit
|
commitdiff
|
tree
2016-08-15
Berk Hess
Reduce FE pair-
l
ist memo
r
y u
s
age
commit
|
commitdiff
|
tree
2016-08-12
Mark Abraham
Bum
p
n
u
mber to prepare for first patch rel
e
ase
commit
|
commitdiff
|
tree
2016-08-04
Mark
A
braham
V
e
rsion 2016
commit
|
commitdiff
|
tree
2016-08-03
David
v
a
n
der Spoel
Thr
e
e
ne
w
q
uo
t
es
.
commit
|
commitdiff
|
tree
2016-08-03
Vedran
Mileti
ć
Use only legal charact
e
rs in OpenCL
c
ache filename
commit
|
commitdiff
|
tree
2016-07-29
Mark Abraham
Improve handl
i
n
g of gmock and gc
c
6
commit
|
commitdiff
|
tree
2016-07-29
Mark Abraham
Merge br
a
nch relea
s
e-5-1 into relea
s
e-2016
commit
|
commitdiff
|
tree
2016-07-29
David van
d
er Spoel
Fixe
s
incorrect charges in OPLS/AA-L for HISD and HIS
E
commit
|
commitdiff
|
tree
2016-07-28
Mark
Abraham
Add toolchain flags
f
o
r SSE2
compil
a
tion
commit
|
commitdiff
|
tree
2016-07-21
Mark Abraham
B
umped patch nu
m
ber to prep
a
re for futu
r
e 5
.
1
.
4
relea
s
e
commit
|
commitdiff
|
tree
2016-07-14
Mark Abraham
Fix issues with using
i
nt fo
r
numbe
r
o
f steps
commit
|
commitdiff
|
tree
2016-07-13
Mark
A
braham
Version 5
.
1
.
3
commit
|
commitdiff
|
tree
2016-07-12
Mark Abraham
Fi
x
trr m
a
gic number
read
i
ng
commit
|
commitdiff
|
tree
2016-07-11
Mark
A
braham
Fix gmx mdr
u
n -membed -
n
tmp
i
-1
commit
|
commitdiff
|
tree
2016-07-11
E
r
ik
Lindahl
Fix
m
embed with partia
l
r
eve
r
t
o
f
29943f
commit
|
commitdiff
|
tree
2016-07-11
M
ic
h
ael Shirts
Fix
for incor
r
ectly setting expanded ens
e
mble when
.
.
.
commit
|
commitdiff
|
tree
2016-07-11
Mark Abraham
Fix regressiontest
download md5sum
commit
|
commitdiff
|
tree
2016-07-09
Mark Abraham
F
irst
2016 relea
s
e candidate
commit
|
commitdiff
|
tree
2016-07-09
Erik Lindahl
H
ard
w
ar
e
detection cl
e
an-up an
d
pre/post-p
r
oces
s
in
g
commit
|
commitdiff
|
tree
2016-07-08
Jochen Hub
Updated g_wham for
th
e
new pull
s
etup
commit
|
commitdiff
|
tree
2016-07-08
M
a
rk Abraham
Merge br
a
nch release
-
5-1 into release-2016
commit
|
commitdiff
|
tree
next