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Make gmx_multisim_t a C++ object
2019-09-11
Mark Abraham
Make gmx_
m
ultisi
m
_t
a
C++ object
commit
|
commitdiff
|
tree
2019-09-10
Mark
A
braham
Avo
i
d warning in no-mpi b
u
ild
commit
|
commitdiff
|
tree
2019-09-10
Art
e
m Zhmurov
Making DeviceBuffe
r
availible in non-GPU build
s
commit
|
commitdiff
|
tree
2019-09-10
Paul Bauer
Add indication on how to
e
nable
I
mageMagick conv
e
rt
commit
|
commitdiff
|
tree
2019-09-09
Szilá
r
d Páll
Assert the types of
OpenCL kern
e
ls
ar
g
uments
commit
|
commitdiff
|
tree
2019-08-25
Artem Zhmuro
v
Make use of recent changes to prepare
K
er
n
el
A
rgu
m
ents
.
.
.
commit
|
commitdiff
|
tree
2019-08-25
Artem Zh
m
u
rov
Misce
l
ene
o
us improve
m
ents to the Leap
F
rog tests
commit
|
commitdiff
|
tree
2019-08-20
Ma
r
k Abraham
A
pply clang-tidy-8 readability-upperca
s
e
-literal-
s
uffix
commit
|
commitdiff
|
tree
2019-08-20
Mark Abraham
Use potential-shift as
d
efau
l
t modifier
commit
|
commitdiff
|
tree
2019-08-09
Berk Hess
Move bonded
fun
c
tion t
a
ble
into bon
d
e
d
.
cpp
commit
|
commitdiff
|
tree
2019-08-08
M
a
rk Abraham
Initialize gmx_ekindata_t and t_vcm
properly
commit
|
commitdiff
|
tree
2019-08-06
Artem Zh
m
urov
Fix f
o
r
cmake
l
i
sts in
m
dlib
tes
t
s
commit
|
commitdiff
|
tree
2019-07-31
Artem Zhm
u
rov
Change the f
i
le stru
c
ture in c
o
nstraints tests
commit
|
commitdiff
|
tree
2019-07-31
Szi
l
á
rd Páll
Store w
c
yc
l
e pointer in no
n
bond
e
d_verl
e
t_t
commit
|
commitdiff
|
tree
2019-07-26
Artem Zhm
u
rov
Remove PIm
p
l scaf
f
o
l
d
ing
f
rom CUDA version of SETTLE
commit
|
commitdiff
|
tree
2019-07-05
Kevin Boyd
Ch
a
nge error
m
ess
a
ge
w
hen attempting to offlo
a
d to
.
.
.
commit
|
commitdiff
|
tree
2019-07-05
Ar
t
e
m Zhmurov
Rem
o
ve PIm
p
l sc
a
ffolding
f
r
om CUDA
ve
r
s
i
on o
f
L
I
NCS
commit
|
commitdiff
|
tree
2019-07-04
A
r
te
m
Zhmur
o
v
Use reallocate
D
e
vice
B
uffer
(
.
.
.
)
i
n
CU
D
A v
e
rsion o
f
.
.
.
commit
|
commitdiff
|
tree
2019-07-03
Ar
t
em Zhmurov
Ear
l
y ex
i
t for CUDA v
e
rsions of SETTLE and LI
N
C
S
commit
|
commitdiff
|
tree
2019-07-03
Artem
Z
hmurov
Memor
y
m
a
nagement fixes in
CUDA version
of LI
N
CS
commit
|
commitdiff
|
tree
2019-06-28
Szilárd Páll
Separate CPU NB kern
e
l and buffer cl
e
aring
subc
o
unter
s
commit
|
commitdiff
|
tree
2019-06-28
Magnus Lundborg
Fused GPU
b
onded kernels
commit
|
commitdiff
|
tree
2019-06-18
Arte
m
Z
hmurov
Combine CU
D
A
Leap-
F
rog
,
LINCS and SETTL
E
.
I
.
commit
|
commitdiff
|
tree
2019-05-24
Ar
t
e
m
Zhmurov
Clar
i
f
y which
o
f
the
main
e
nergy terms
a
re
p
rinted
.
commit
|
commitdiff
|
tree
2019-05-13
P
aul
B
au
e
r
Fix
m
ath formatting in reference man
u
a
l
commit
|
commitdiff
|
tree
2019-05-12
Artem Zhmurov
CUDA version
o
f Leap-Frog in
t
egrator with basic test
s
commit
|
commitdiff
|
tree
2019-05-06
M
a
rk Abraham
Improve how
mdrun -noappend nam
e
s
out
p
ut files
commit
|
commitdiff
|
tree
2019-05-02
Artem Z
h
murov
U
s
e
t
e
s
t with
p
arameters f
o
r EnergyOutput
commit
|
commitdiff
|
tree
2019-04-30
Artem Zhmur
o
v
CUDA ve
r
sion
o
f SET
T
LE algorithm wi
t
h
ba
s
ic tests
commit
|
commitdiff
|
tree
2019-04-29
Artem Zhmurov
Fix fo
r
t
h
e CUDA
ver
s
ion of LINCS
commit
|
commitdiff
|
tree
2019-04-28
Arte
m
Zhm
u
rov
CUDA version of
L
INCS constraints
.
commit
|
commitdiff
|
tree
2019-04-04
Carsten
K
u
tzner
Early
e
xit fr
o
m mdrun i
f
gr
o
u
p sc
h
eme is detected in
.
.
.
commit
|
commitdiff
|
tree
2019-04-04
Artem Zhmurov
Remove isPressur
e
C
o
upling
S
tep(
.
.
.
)
commit
|
commitdiff
|
tree
2019-04-04
Artem Zhmuro
v
R
e
mo
v
e isT
e
mper
a
tureCoupl
i
ngSt
e
p(
.
.
.
)
commit
|
commitdiff
|
tree
2019-03-13
Artem Zhm
u
rov
Basic
r
outines to
h
andle periodic boundar
y
.
commit
|
commitdiff
|
tree
2019-02-19
Artem
Zhmu
r
ov
PBC
s
etup for GPU is
m
o
v
e
d
in
t
o
p
bcutils
.
commit
|
commitdiff
|
tree
2019-02-13
Artem Zhmurov
Ignore Visual
S
tudio Code metadata
.
commit
|
commitdiff
|
tree