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Moved copyrite.* to fileio from gmxlib and legacyheaders.
2015-11-12
David van der Spoel
Moved copyrite
.
*
t
o fileio from gm
x
lib and legacyheaders
.
commit
|
commitdiff
|
tree
2015-11-11
D
a
v
i
d va
n
der Spo
e
l
M
o
ved inputrec
.
*
from gm
x
lib and legacyh
e
aders to mdtype
s
.
commit
|
commitdiff
|
tree
2015-11-10
David van
d
er Spoel
Remov
e
d legacyheaders/
t
ypede
f
s
.
h
commit
|
commitdiff
|
tree
2015-11-03
David van der Spoe
l
Moved df_
h
istory u
t
ility rou
t
ines
f
rom type
d
efs
t
o
.
.
.
commit
|
commitdiff
|
tree
2015-11-01
Da
v
id van der Spoel
Replaced NOTSE
T
from typedefs
.
h by lo
c
al solutions
.
commit
|
commitdiff
|
tree
2015-10-23
David van
d
er Spoel
Removed e
n
ergyhistory
code
from typedefs
to a separ
a
te
.
.
.
commit
|
commitdiff
|
tree
2015-10-18
David van der
Spoel
Mo
v
ed
p
bc/cut-off related
u
tili
t
ies from typedefs
to
.
.
.
commit
|
commitdiff
|
tree
2015-10-15
David van
d
er Spo
e
l
Freed
memo
r
y
i
n le
g
acy stati
s
t
ics routi
n
e
s
.
commit
|
commitdiff
|
tree
2015-10-03
David van der Spoel
Remo
v
e
d
simple
.
h
commit
|
commitdiff
|
tree
2015-10-02
David van d
e
r Spoel
Removed
s
imple
.
h
from nb_kernel_sse4_1_XX
commit
|
commitdiff
|
tree
2015-10-02
D
a
vid van
d
e
r
Spoe
l
Remove
d
s
impl
e
.
h
f
r
om nb_kerne
l
_sse2_XX
commit
|
commitdiff
|
tree
2015-10-02
David
v
a
n der Spoe
l
Removed simple
.
h
f
r
om nb_kernel_c and nb_ker
n
el_sparc64_hpc
.
.
.
commit
|
commitdiff
|
tree
2015-10-02
David van d
e
r
Spoel
R
emoved
in
c
lude
simple
.
h fr
o
m nb_kern
e
l_avx_
1
28_fma_X
X
commit
|
commitdiff
|
tree
2015-10-02
David van
der Sp
o
e
l
Removed
s
impl
e
.
h from nb_kernel
_
avx_256_X
X
commit
|
commitdiff
|
tree
2015-10-02
David van
d
e
r Spoel
Rem
o
ved output_
e
nv_t, now
u
sing gm
x
_out
p
ut_
e
nv_t *
.
.
.
commit
|
commitdiff
|
tree
2015-10-01
David van der Spoel
Re
m
o
v
ed types
/
nrnb
.
h
f
rom t
y
pedefs
.
h
.
commit
|
commitdiff
|
tree
2015-09-30
Da
v
id van der S
p
oel
Removed type
s
/nbli
s
t
.
h and types/nsgrid
.
h
from typ
e
defs
.
h
commit
|
commitdiff
|
tree
2015-09-30
David van der Spoel
Removed types/mdatom
.
h fro
m
typedefs
.
h
commit
|
commitdiff
|
tree
2015-09-29
Dav
i
d van de
r
S
poel
R
e
moved types/inp
u
tr
e
c
.
h
f
ro
m
t
y
pedef
s
.
h and releted
.
.
.
commit
|
commitdiff
|
tree
2015-09-29
David
va
n
der Spoel
Fi
x
es bug in
the computat
i
on of Coefficient of Th
e
rmal
.
.
.
commit
|
commitdiff
|
tree
2015-09-27
David v
a
n der Spoel
Removed types/forcerec
.
h fr
o
m
t
ypedefs
.
h
commit
|
commitdiff
|
tree
2015-09-25
David van d
e
r Spoel
Removed inclu
d
e
of types/ifunc
.
h
f
rom typedefs
.
h
commit
|
commitdiff
|
tree
2015-09-22
D
avid van der Sp
o
e
l
Removed
f
ou
r
includes from
l
egacy
h
e
a
d
e
rs
/
t
y
p
e
defs
.
h
commit
|
commitdiff
|
tree
2015-09-22
D
avid van der Spoel
Removed legacyheaders/types/commrec
_
fwd
.
h from ty
p
edef
.
h
commit
|
commitdiff
|
tree
2015-09-10
D
a
vid van der Spo
e
l
M
o
ved content from mdrun
.
h to
s
epara
t
e he
a
der
s
.
commit
|
commitdiff
|
tree
2015-09-10
D
avid v
a
n de
r
Spoel
Removed <sys/types
.
h> and
"types/c
o
ns
t
r
.
h" from type
d
efs
commit
|
commitdiff
|
tree
2015-09-09
D
a
vid van
der
Spoel
R
e
moved
fileio/
t
rx
.
h from ty
p
edefs
.
h
commit
|
commitdiff
|
tree
2015-09-08
David
van der Spoel
Moved function
s
operat
i
ng on forcerec to
s
eparate he
a
d
e
r
.
commit
|
commitdiff
|
tree
2015-08-28
D
avid van d
e
r S
p
oel
Add
e
d energy (edr
)
file type to
O
ptions
head
e
r
s
.
commit
|
commitdiff
|
tree
2015-08-28
Dav
i
d
van
der Spoel
A
d
ded
a
d
d
it
i
onal constructor to String
S
tream cla
s
s
.
.
.
commit
|
commitdiff
|
tree
2015-08-03
Da
v
id van
d
er Spoel
Made output from d
u
m
p
i
n
g
ne
i
g
htborlists ea
s
i
e
r to read
.
commit
|
commitdiff
|
tree
2015-07-31
Da
v
id van der Spoel
Change initial
p
a
r
a
mete
r
s for testing expfi
t
.
commit
|
commitdiff
|
tree
2015-07-29
D
a
vid van der Spoel
Code for c
h
ecking xvg files in
t
es
t
utils
.
commit
|
commitdiff
|
tree
2015-04-17
David van der Spoel
Updated e
x
ponential fit
t
ing t
o
make i
t
robust
.
commit
|
commitdiff
|
tree
2015-04-09
David van der Spoel
Cl
a
ri
f
ie
d
comments for time-dependent electric fields
.
commit
|
commitdiff
|
tree
2015-04-08
David van der Spoel
Fixed incorrect output of gb_algo
r
ith
a
s sa_algorithm
.
commit
|
commitdiff
|
tree
2015-03-02
Da
v
id v
a
n der Sp
o
el
Up
d
ated do
c
umentation
f
or ele
c
tric fields
.
commit
|
commitdiff
|
tree
2014-12-13
Dav
i
d va
n
der Spoel
F
o
ur new qu
o
tes from around
t
he world
.
commit
|
commitdiff
|
tree
2014-11-28
David van
d
er Spoel
Fixes recently introduced
b
u
g in gmx analyze
.
commit
|
commitdiff
|
tree
2014-11-24
David van der Spoe
l
Ad
d
ed warnin
g
s for ewal
d
-
g
eometry and surfac
e
-epsilon
commit
|
commitdiff
|
tree
2014-10-28
David
van
d
er
S
poel
Even more refreshing quotes
.
commit
|
commitdiff
|
tree
2014-10-14
Da
v
i
d van der Sp
o
el
R
eorgani
z
ing analysis
of corr
e
lation f
u
n
ctions
.
commit
|
commitdiff
|
tree
2014-09-23
David van der Spoel
Fixes
p
ote
n
tial bug in nei
g
hborse
a
r
c
hing
.
commit
|
commitdiff
|
tree
2014-09-17
Da
v
id van der
S
po
e
l
Mer
g
e
rel
e
ase-5-0 int
o
master
commit
|
commitdiff
|
tree
2014-09-10
David va
n
der
S
poel
Remove
.
tp
a
,
.
tpb,
.
tpx,
.
trj
f
iles
.
Part
of #1
5
00
.
commit
|
commitdiff
|
tree
2014-08-30
David van
der S
p
oel
Fixes
iss
u
e with vsiten and v
e
rlet
b
u
f
fers
.
commit
|
commitdiff
|
tree
2014-07-05
David va
n
der
Spoel
Fix
e
d inconsist
e
ncy in blocka
h
a
ndl
i
n
g
.
commit
|
commitdiff
|
tree
2014-06-29
D
a
vid van der
S
p
o
el
Fixes #1532, SEGV in g_curre
n
t
.
commit
|
commitdiff
|
tree
2014-06-25
David van de
r
Spoel
Added check fo
r
doma
i
n deco
m
posit
i
on an
d
shells
.
commit
|
commitdiff
|
tree
2014-06-24
David
va
n
der S
p
o
el
Added check i
n
gromp
p
for shells and inputrec issues
.
commit
|
commitdiff
|
tree
2014-06-22
David van der Spoel
Implemente
d
fatal error for nstcalce
n
erg
y
!=1 with sh
e
lls
.
commit
|
commitdiff
|
tree
2014-06-13
David van der Spoel
Fix memory-usage
e
rror in
g_chi
commit
|
commitdiff
|
tree
2014-06-11
David va
n
der Sp
o
el
Fi
x
es bu
g
where -
e
and -dt flags did not work any
m
or
e
.
commit
|
commitdiff
|
tree
2014-06-07
Da
v
id v
a
n der Spoel
M
erge "Merge release-
5
-0 into
m
a
st
e
r"
commit
|
commitdiff
|
tree
2014-06-07
D
av
i
d
van d
e
r
S
poel
Merge release-5-0
i
nto
m
a
st
e
r
commit
|
commitdiff
|
tree
2014-06-02
David van der Spoel
F
ixed wrong jo
u
rn
a
l refere
n
ce in m
a
nual
commit
|
commitdiff
|
tree
2014-05-31
David van der Spoel
Permit trjconv
to read
and
wri
t
e ve
l
o
cities with TN
G
.
.
.
commit
|
commitdiff
|
tree
2014-05-16
David van der Spoe
l
Fixes a complicated bug in g_anaeig
.
commit
|
commitdiff
|
tree
2014-05-15
D
avid
v
an d
e
r
S
poel
Added
cmak
e
p
r
ofiling sup
p
ort
commit
|
commitdiff
|
tree
2014-04-02
D
avi
d
van
d
er Spoel
Removed possibility of compilin
g
with GSL
.
commit
|
commitdiff
|
tree
2014-03-31
D
avid van der Spoel
Fixed
c
ompilation issue in fgrid
.
cp
p
due t
o
int/en
u
m
commit
|
commitdiff
|
tree
2014-03-06
David va
n
der Spoel
Six ne
w
quotes from
c
las
s
i
c
li
t
eratur
e
.
commit
|
commitdiff
|
tree
2014-02-11
David van der
Spo
e
l
Fi
x
ed
another vmd
i
o issue
.
commit
|
commitdiff
|
tree
2014-02-10
David van der Sp
o
el
Moved cond
i
tional cmake
c
ode for vm
d
io
.
commit
|
commitdiff
|
tree
2014-01-28
Da
v
i
d van der Spoel
M
oved random
number gener
a
tor code to separa
t
e d
i
r
.
commit
|
commitdiff
|
tree
2014-01-18
David van der S
p
oel
This pat
c
h moves the statistic
s
library t
o
i
ts ow
n
.
.
.
commit
|
commitdiff
|
tree
2014-01-17
Da
v
id va
n
der Spoel
This p
a
tch m
o
ves preprocessing
he
a
der
s
to gmxpreprocess
commit
|
commitdiff
|
tree
2014-01-15
D
a
vid
v
an der Spoel
This patch moves the n
r
ama
.
[ch] to the
gmxana dir
.
commit
|
commitdiff
|
tree
2014-01-13
David van der Spoel
Cle
a
ned up
l
ist of GROMACS authors
commit
|
commitdiff
|
tree
2014-01-09
Davi
d
van der Spoel
Fixed precision i
n
thermal expans
i
on coefficient calc
.
commit
|
commitdiff
|
tree
2013-12-23
David van der Sp
o
el
Fix
e
d compilation issu
e
due
t
o
gcc4
.
8
commit
|
commitdiff
|
tree
2013-12-21
Dav
i
d van
de
r
Spoel
More
Nobel quot
e
s and others
commit
|
commitdiff
|
tree
2013-11-07
David van der Spoel
12 n
e
w quotes
commit
|
commitdiff
|
tree
2013-09-30
D
a
vid van der
S
poel
Chan
g
e name of gmxdump
t
o
dump
an
d
gm
x
check to che
c
k
commit
|
commitdiff
|
tree
2013-09-29
David van der Spoel
Fi
x
es bug in processin
g
virtual_sitesn in g
r
o
m
pp
.
commit
|
commitdiff
|
tree
2013-09-26
D
avi
d
van
der Spoel
Made MW of th
e
Vs
i
te particle type
.
commit
|
commitdiff
|
tree
2013-09-21
D
avid van der
S
poel
Moved n
g
mx to
C++, renamed i
t
to view
.
commit
|
commitdiff
|
tree
2013-08-30
Da
v
i
d
van der Spoel
Up
d
a
t
e
d
g_cluster
commit
|
commitdiff
|
tree
2013-07-24
Da
v
id van der Spoel
Fixes #131
2
uni
n
iti
a
lized erro
r
in g_enema
t
.
commit
|
commitdiff
|
tree
2013-07-17
David v
a
n der Spoel
A
d
d
e
d cit
a
t
i
on to
free volu
m
e
pa
p
er
.
commit
|
commitdiff
|
tree
2013-06-14
David van der Spoel
N
e
w analysis tool
t
o compu
t
e
t
he free
volume and tot
a
l
.
.
.
commit
|
commitdiff
|
tree
2013-05-30
David van der Spoel
Fixe
s
#1194 error reading 4
.
5
.
5 tpr
files
with
dihres
commit
|
commitdiff
|
tree
2013-05-16
Dav
i
d
v
a
n der Spoel
Fi
x
e
d two comp
i
lation
i
s
sue
s
.
commit
|
commitdiff
|
tree
2013-05-02
David van der Spoel
Fi
x
es #
1
238 g_hydorde
r
does not call set_pbc
.
commit
|
commitdiff
|
tree
2013-05-01
Dav
i
d van de
r
Spo
e
l
Merge "
U
pd
a
ted source fo
r
Van d
e
r Waals radii
.
"
commit
|
commitdiff
|
tree
2013-04-25
Dav
i
d van
der Spoel
Updated source for Van der Waa
l
s radii
.
commit
|
commitdiff
|
tree
2013-04-16
David van der Sp
o
el
M
e
rge "correct
e
d grompp rvdw
c
harge-group ra
d
i
i check
.
.
.
commit
|
commitdiff
|
tree
2013-04-13
David van der
S
poel
Merge "added mdrun check for
V
erlet+p
e
rturbed
atom
s
.
.
.
commit
|
commitdiff
|
tree
2013-04-12
David van der Sp
o
el
Me
r
ge "
A
dd hi
s
togr
a
m output for
'
gmx
gang
l
e'
.
"
commit
|
commitdiff
|
tree
2013-03-07
Da
v
id van der Spoel
Fixes #1183
PBC bug in g_mindis
t
commit
|
commitdiff
|
tree
2013-02-15
David van
d
e
r
S
p
o
el
Mer
g
e
"Fixed an init
i
a
lization issu
e
in gmx_d
i
poles
.
.
.
commit
|
commitdiff
|
tree
2013-02-13
David
v
a
n der Spoel
Plain text q
u
otes
.
commit
|
commitdiff
|
tree
2013-01-14
David van der Spoel
Merge "Fixing
t
r
j
conv
-sub" i
n
to release-4
-
5-patches
commit
|
commitdiff
|
tree
2013-01-14
Dav
i
d
v
an der Spoe
l
Merge "Noting t
h
a
t
and why
gm
x
dump -s -sys is broken
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
D
a
v
id
v
an d
e
r Spoe
l
Fi
x
es #994 confusion
in atomprop
.
commit
|
commitdiff
|
tree
2013-01-07
D
a
vid van der Spoel
Merge "Rem
o
ved
reference to nonexistent file in g_h
e
lix
.
.
.
commit
|
commitdiff
|
tree
2012-11-27
David van der
S
poe
l
Merge "Mer
g
e
release-4-5-
p
atc
h
es into release-4-6"
.
.
.
commit
|
commitdiff
|
tree
2012-11-26
D
avid van
d
er Spoel
Fixes
#
1035 Na
N
i
n g_c
l
uster output
.
commit
|
commitdiff
|
tree
2012-11-20
D
avid v
a
n
der Sp
o
el
Fixes bug
i
n g
_
hbond that makes it pr
o
duce fatal err
o
r
.
commit
|
commitdiff
|
tree
2012-11-17
David van der Sp
o
el
Me
r
ge
"Added grompp w
a
rnin
g
"
into
r
elease-4-6
commit
|
commitdiff
|
tree
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