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Introduce stream management to GPU Update-Constraints
2019-09-27
Ar
t
em Zhmurov
Introd
u
ce
s
tream
management
t
o GPU Update-Co
n
strai
n
ts
commit
|
commitdiff
|
tree
2019-09-22
Art
e
m Zhmurov
Disable GPU
update/constraints when neit
h
er PME
n
o
r
.
.
.
commit
|
commitdiff
|
tree
2019-09-12
Artem Zhmu
r
ov
Change
P
addedVector t
o
PaddedHo
s
tVector for fo
r
ce CPU
.
.
.
commit
|
commitdiff
|
tree
2019-09-11
Artem Zhmurov
F
ix for the post-submit f
a
ilure
commit
|
commitdiff
|
tree
2019-09-11
Artem Zh
m
urov
Decouple GPU fo
r
ce buffer management from buffer ops
.
.
.
commit
|
commitdiff
|
tree
2019-09-11
A
rtem Z
h
mur
o
v
Dec
o
u
p
le
co
o
rdinates buffer management f
r
om b
u
f
f
er
.
.
.
commit
|
commitdiff
|
tree
2019-09-11
Artem Zhmurov
Re
o
rganize PME code:
commit
|
commitdiff
|
tree
2019-09-10
Artem Z
h
m
u
rov
Making DeviceBuffe
r
availible in non-
G
PU
b
uilds
commit
|
commitdiff
|
tree
2019-09-03
A
r
tem Zh
m
u
r
ov
Ad
d
Parrinello-Rah
m
an
p
r
e
ssure coup
l
ing to C
U
DA Leap
.
.
.
commit
|
commitdiff
|
tree
2019-08-26
Artem Zhmurov
Add temperature coupl
i
ng to CUDA Le
a
p
-Fr
o
g integrator
commit
|
commitdiff
|
tree
2019-08-25
Artem Zhmurov
Make
use of recen
t
changes to pr
e
pareKerne
l
Argument
s
.
.
.
commit
|
commitdiff
|
tree
2019-08-25
Art
e
m Zh
m
urov
Mis
c
elene
o
us
improvement
s
to t
h
e Leap
Fro
g
tests
commit
|
commitdiff
|
tree
2019-08-14
Arte
m
Z
hmurov
BugFix: Zeroing the
p
added a
r
e
a
of coord
i
nates vectors
.
.
.
commit
|
commitdiff
|
tree
2019-08-13
Artem
Zhmur
o
v
Make use of
reference
data
i
n integrato
r
tes
t
s
commit
|
commitdiff
|
tree
2019-08-13
A
r
te
m
Zhmur
o
v
Ma
k
e
use of reference data in SETTLE tests
commit
|
commitdiff
|
tree
2019-08-09
A
rtem Zhmurov
Prepare Update and Con
s
t
raints
for Domain Decomposition
commit
|
commitdiff
|
tree
2019-08-09
A
r
tem
Z
hmurov
Refact
o
r
ing
of the SETTLE tests
commit
|
commitdiff
|
tree
2019-08-08
Artem Zhmurov
Refactor Leap-Frog tes
t
s and connect them to
C
PU
version
commit
|
commitdiff
|
tree
2019-08-06
Art
e
m Zhmurov
F
ix for cmak
e
lists in mdlib
tests
commit
|
commitdiff
|
tree
2019-08-06
Art
e
m Z
h
murov
Re
m
ove PIm
p
l scaffolding from CUDA version of
Leap
.
.
.
commit
|
commitdiff
|
tree
2019-07-31
Arte
m
Zhmurov
Chang
e
the file struct
u
re in constraints tests
commit
|
commitdiff
|
tree
2019-07-31
Artem Zhmurov
Introduc
e
func
t
ion that checks if the
c
o
m
putations
.
.
.
commit
|
commitdiff
|
tree
2019-07-26
A
r
tem Z
h
murov
R
e
mo
v
e PImpl scaffol
d
in
g
from CUDA version
of SETTLE
commit
|
commitdiff
|
tree
2019-07-05
Arte
m
Zhmurov
Remove
P
Impl scaff
o
l
ding
from CUDA v
e
rsion of LINCS
commit
|
commitdiff
|
tree
2019-07-04
Arte
m
Zhmur
o
v
Use reallocateDev
i
ceBuf
f
er
(
.
.
.
) in
C
UDA
ver
s
ion of
.
.
.
commit
|
commitdiff
|
tree
2019-07-03
A
r
tem
Zhmu
r
ov
Early exit for CUDA ver
s
ions of SETT
L
E a
n
d LINCS
commit
|
commitdiff
|
tree
2019-07-03
A
r
tem Z
h
murov
M
e
mo
r
y management
f
ixe
s
in CUDA
v
ersion of LINCS
commit
|
commitdiff
|
tree
2019-07-03
Art
e
m Zhmurov
Combine CUDA Leap-
F
rog, LI
N
CS and SETTLE
.
II
.
commit
|
commitdiff
|
tree
2019-06-18
A
r
t
e
m Zhmurov
Combine CUDA Leap-Frog, LINCS and SET
T
LE
.
I
.
commit
|
commitdiff
|
tree
2019-06-18
Artem
Zhmur
o
v
Bug fix:
C
onstrai
n
ts
t
ests are not instantiated w
i
th
.
.
.
commit
|
commitdiff
|
tree
2019-05-24
Artem Zhmuro
v
C
l
a
rify which of the
ma
i
n ene
r
gy
term
s
are
printed
.
commit
|
commitdiff
|
tree
2019-05-24
Artem Zhmurov
Clarify the EnergyOutput III
commit
|
commitdiff
|
tree
2019-05-24
Artem Zhmurov
Cl
a
rify the EnergyOu
t
pu
t
II
commit
|
commitdiff
|
tree
2019-05-13
A
rtem Zhmur
o
v
Clarify the EnergyOutput I
commit
|
commitdiff
|
tree
2019-05-12
Artem Zh
m
urov
CUDA version of
L
eap-Frog integrato
r
w
ith basic tests
commit
|
commitdiff
|
tree
2019-05-06
Artem
Zhmuro
v
Fixin
g
minor memory i
s
s
ues in
M
DLib
commit
|
commitdiff
|
tree
2019-05-02
Art
e
m
Z
hmurov
U
se test with
p
arameters f
o
r EnergyOutput
commit
|
commitdiff
|
tree
2019-04-30
Arte
m
Zhmurov
CUD
A
ver
s
ion of SETTL
E
algori
t
h
m with basic te
s
t
s
commit
|
commitdiff
|
tree
2019-04-29
A
r
tem Zhmurov
Fix for the CUDA
ver
s
i
on
of LINCS
commit
|
commitdiff
|
tree
2019-04-28
Artem
Z
hm
u
rov
CU
D
A
v
e
rsio
n
of LINCS constraints
.
commit
|
commitdiff
|
tree
2019-04-25
Artem Zhmurov
Improvements for ene
r
gy output test
.
commit
|
commitdiff
|
tree
2019-04-16
A
r
t
e
m Zhmurov
Fix for the memory acc
e
ss error
in
c
onstraint
s
t
es
t
.
commit
|
commitdiff
|
tree
2019-04-04
Artem Zhmurov
Remove is
P
res
s
ur
e
CouplingStep(
.
.
.
)
commit
|
commitdiff
|
tree
2019-04-04
Ar
t
em Zhmurov
Remove i
s
Tem
p
eratureCou
p
ling
S
tep(
.
.
.
)
commit
|
commitdiff
|
tree
2019-03-28
Artem Zhmurov
GPU naming conventions
commit
|
commitdiff
|
tree
2019-03-25
Artem
Zhmurov
R
emove unu
s
e
d headers
commit
|
commitdiff
|
tree
2019-03-13
Artem Zhmu
r
ov
B
a
sic ro
u
tines to handle p
e
riodic
bounda
r
y
.
commit
|
commitdiff
|
tree
2019-02-21
Ar
t
em Zhmurov
T
est for LINCS an
d
SHAKE
c
on
s
traints
.
commit
|
commitdiff
|
tree
2019-02-19
Artem
Zhmurov
PB
C
setup
for G
P
U
is moved into
pbc
u
tils
.
commit
|
commitdiff
|
tree
2019-02-13
Artem Zhmurov
Ignore Visual Studio
C
o
d
e m
e
ta
d
ata
.
commit
|
commitdiff
|
tree
2018-12-27
Ar
t
em Zhmurov
The tests for LINCS and S
H
AKE constraints
.
commit
|
commitdiff
|
tree