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Update instructions in containers.rst
2020-11-24
Erik Lindah
l
Make su
r
e
frexp() ret
u
rns corre
c
t fo
r
argument 0
.
0
commit
|
commitdiff
|
tree
2020-10-19
Erik L
i
ndahl
New Twi
t
ter
-
b
ased qu
o
te
commit
|
commitdiff
|
tree
2020-10-07
Eri
k
Lin
d
ahl
New release, new quote
s
!
commit
|
commitdiff
|
tree
2020-09-15
Eri
k
Lin
d
ahl
E
nable GM
X
_G
P
U=
S
YCL compiles
commit
|
commitdiff
|
tree
2020-09-15
Erik L
i
n
d
ahl
Fix m
i
nor warnings noticed by Intel compilers
commit
|
commitdiff
|
tree
2020-08-20
Erik L
i
ndahl
E
nable
CI testing o
f
O
penAPI / OpenCL
commit
|
commitdiff
|
tree
2020-08-13
Eri
k
Lindah
l
CMake SYC
L
& In
t
el
O
penMP handli
n
g
commit
|
commitdiff
|
tree
2020-08-04
Eri
k
Lin
d
a
h
l
Si
m
p
l
ified uni
f
orm GP
U
selection in CMake
commit
|
commitdiff
|
tree
2020-06-17
Eri
k
Linda
h
l
Simp
l
ified un
i
f
o
rm GPU selection in CMake
commit
|
commitdiff
|
tree
2020-06-15
Er
i
k
Lindahl
Repla
c
e
t
riv
a
lue opti
o
ns wit
h
plain boole
a
n
s
commit
|
commitdiff
|
tree
2020-06-11
Erik
L
indah
l
Replace
t
riv
a
lue
options with plain boole
a
ns
commit
|
commitdiff
|
tree
2020-06-10
Erik Lindahl
Replace automatic
rdtscp checks with
bool
e
an option
commit
|
commitdiff
|
tree
2020-06-09
Erik
L
indahl
Av
o
id using AU
T
O settin
g
s in CI buil
d
s
commit
|
commitdiff
|
tree
2020-06-03
Eri
k
Lin
d
a
hl
R
em
o
ve 'r
e
gister' storage class in
c
l
FF
T
commit
|
commitdiff
|
tree
2020-05-25
E
rik Lindahl
Fix warn
i
ngs on llvm
1
1
compilers
commit
|
commitdiff
|
tree
2020-01-07
Erik Lindahl
W
rite
T
PR bod
y
as opaqu
e
XDR data
in big-endian format
commit
|
commitdiff
|
tree
2020-01-01
Erik
Lin
d
a
hl
Add
link to
p
aper explaining G
R
OMO
S
twin
-
ran
g
e issues
.
commit
|
commitdiff
|
tree
2019-12-29
Eri
k
Lind
a
hl
Wr
i
t
e TPR bo
d
y a
s
opaq
u
e XDR data in big-endian
f
o
r
mat
commit
|
commitdiff
|
tree
2019-11-13
Erik
L
i
n
dahl
Updated physica
l
constants
t
o CO
D
ATA
2018
commit
|
commitdiff
|
tree
2019-11-06
Er
i
k Lindahl
Work around broken Apple
c
o
mp
i
l
e
r
s
in Mac O
S
10
.
15
commit
|
commitdiff
|
tree
2019-11-06
E
rik L
i
ndahl
Wo
r
k a
r
ou
n
d broken Apple compilers
in
Mac OS 10
.
15
commit
|
commitdiff
|
tree
2019-09-13
Erik
L
i
n
dahl
Add rounding correction
t
o
unsafe simd exp
te
s
t
s
too
commit
|
commitdiff
|
tree
2019-09-13
Erik Lindahl
F
i
x
clang
t
idy warnin
g
s in SI
M
D code
commit
|
commitdiff
|
tree
2019-09-12
Eri
k
Lindahl
Adjust test rang
e
an
d
fix
s
ingleaccura
c
y te
s
ts
commit
|
commitdiff
|
tree
2019-09-12
Erik Lindah
l
Ad
d
ed SIMD cbrt
a
nd in
v
c
brt
functions
commit
|
commitdiff
|
tree
2019-09-12
Erik L
i
n
dahl
Added SIMD log2 and pow math functions
commit
|
commitdiff
|
tree
2019-09-12
E
rik Lindahl
Update
S
IMD
m
ath
t
ests and impr
o
ve accuracy
commit
|
commitdiff
|
tree
2019-09-03
Er
i
k Li
n
dahl
Fi
x
C
P
U detection
a
nd SIMD on modern Mac/cmake c
o
mbos
commit
|
commitdiff
|
tree
2019-08-30
Erik Lindahl
F
i
x CPU detect
i
on and SIMD on modern Mac/cmake combos
commit
|
commitdiff
|
tree
2019-08-29
Er
i
k Linda
h
l
Some
q
uo
t
es
I
bumped into last week
commit
|
commitdiff
|
tree
2019-08-23
Erik Lin
d
ahl
Default to AVX2_256 SIMD for Ze
n
2
commit
|
commitdiff
|
tree
2019-08-20
E
r
i
k L
i
ndahl
Avoid
u
sing GMX_SIMD macros t
o
d
e
tect _
m
m_pa
u
se()
commit
|
commitdiff
|
tree
2019-06-09
E
r
ik Lin
d
a
h
l
More quote
s
commit
|
commitdiff
|
tree
2019-05-16
Eri
k
Lindahl
A
dded mor
e
quotes
commit
|
commitdiff
|
tree
2018-08-14
Erik Lind
a
hl
Fix SIM
D
a
n
yTrue
bug
,
and
a
dd bett
e
r unit
test
commit
|
commitdiff
|
tree
2018-06-06
Erik Lindah
l
Use defa
u
lt CM
a
ke path
variables
commit
|
commitdiff
|
tree
2018-06-06
Eri
k
Lin
d
ahl
Bu
m
p G
M
X_BUILD_OWN_FFTW to
3
.
3
.
8
to
a
void bugs
commit
|
commitdiff
|
tree
2018-01-10
Er
i
k Lindahl
Improv
e
pdb2gmx f
o
r no
n
standard r
e
si
d
ue types
commit
|
commitdiff
|
tree
2018-01-10
Erik Lindahl
Clarified
gmx rmsf documentation
commit
|
commitdiff
|
tree
2018-01-05
E
rik Lindahl
T
e
st th
a
t nvcc/ho
s
t compiler combo works
commit
|
commitdiff
|
tree
2018-01-05
Erik
L
indahl
Make TN
G
writing wo
r
k with
multi
p
le identical steps
commit
|
commitdiff
|
tree
2018-01-05
Erik L
i
ndahl
Add AVX_512 and
K
NC symbols to FFTW S
I
MD
t
est
commit
|
commitdiff
|
tree
2018-01-04
Erik Lind
a
hl
Imp
r
ove
frame time/step handling in trjco
n
v
commit
|
commitdiff
|
tree
2018-01-04
E
r
ik Lindahl
Implem
e
nt cha
n
ges
for CMake
policy 0068
commit
|
commitdiff
|
tree
2018-01-03
Eri
k
Lindahl
Fi
x
trjconv
f
o
r td
u
mp<frame timestep
commit
|
commitdiff
|
tree
2018-01-03
Erik Lin
d
ahl
Fix
i
n
dex
e
r
ror in gm
x
c
h
i
commit
|
commitdiff
|
tree
2018-01-03
Eri
k
Lind
a
hl
F
i
x com
p
lexit
y
for large
e
xclusion orders
commit
|
commitdiff
|
tree
2018-01-03
Erik Lindahl
Don't
a
llo
w
mult
i
ple energ
y
groups
f
or GPU runs
commit
|
commitdiff
|
tree
2018-01-03
Er
i
k
L
indahl
Remove
d
up
l
i
c
ations
in
GMXLIB sea
r
ch
p
at
h
s
commit
|
commitdiff
|
tree
2018-01-03
Erik Lindahl
A
v
oid FTZ triggeri
n
g simd test failure
s
commit
|
commitdiff
|
tree
2018-01-02
Erik Linda
h
l
Document
required
p
osit
i
on
r
estraint files
commit
|
commitdiff
|
tree
2018-01-02
Erik Lindahl
A
l
l
ow
e
m
pty lines in h
d
b files
commit
|
commitdiff
|
tree
2018-01-02
E
r
ik Lindahl
Fix OpenCL compiles on Ma
c
OS
commit
|
commitdiff
|
tree
2018-01-02
Eri
k
Lindahl
Impro
v
e
manual from comments by
G
ang Li
u
commit
|
commitdiff
|
tree
2018-01-02
Erik Li
n
dahl
Make it expli
c
it that t
i
me units
apply t
o
begi
n
/end
.
.
.
commit
|
commitdiff
|
tree
2018-01-02
Erik Lindahl
Don't require matching names between rt
p
and tdb files
commit
|
commitdiff
|
tree
2018-01-02
Erik Lindahl
Don't write reference pull group 0 to
log
commit
|
commitdiff
|
tree
2018-01-01
E
rik Lindahl
Fix gmx
dens
i
ty for
n
o
n
-mass calculations
commit
|
commitdiff
|
tree
2018-01-01
Er
i
k Linda
h
l
Clarify XTC error me
s
s
age
commit
|
commitdiff
|
tree
2017-12-26
Erik Lindahl
Fix builds
o
n
ARM
& clarify
(ARM) G
P
U
sup
p
ort
commit
|
commitdiff
|
tree
2017-12-19
E
r
i
k Lindah
l
Use reduced default
to
l
eran
c
e
s f
o
r tpx comparison
commit
|
commitdiff
|
tree
2017-12-14
Er
i
k
Lindahl
Work around
A
VX-5
1
2
issu
e
s in
gcc-5
.
4 and
7
.
1
commit
|
commitdiff
|
tree
2017-12-14
Erik Lin
d
ahl
Fix P
B
C error in
g
m
x_spa
t
i
al
commit
|
commitdiff
|
tree
2017-12-12
Erik L
i
ndahl
Documented
p
o
w
er spectrum to
g
mx vel
a
cc
commit
|
commitdiff
|
tree
2017-12-12
Erik Lindahl
Require TPR f
i
le for gmx cluster
commit
|
commitdiff
|
tree
2017-12-12
Erik Lindahl
Disallow ascii form
a
t
s
for gmx trjc
a
t
commit
|
commitdiff
|
tree
2017-12-11
Erik Lin
d
ahl
Remove dupl
i
cated lines from OPLS ff
b
onded
.
itp
commit
|
commitdiff
|
tree
2017-12-11
Erik Linda
h
l
Don't
w
arn about NVML clock
s
th
a
t are at ma
x
commit
|
commitdiff
|
tree
2017-12-10
Erik Lindahl
Revert "
D
is
a
ble default-o
n
NVML
s
upp
o
rt in CMake"
commit
|
commitdiff
|
tree
2017-12-07
Erik
L
indahl
Ad
d
ed
c
ool
quote
from Viv
e
c
a
's defense
commit
|
commitdiff
|
tree
2017-12-04
E
rik Lindahl
Fix co
m
p
i
l
ation issues for AVX-512
commit
|
commitdiff
|
tree
2017-11-28
Er
i
k L
i
ndahl
Fix AVX-
5
12 SIMD
test for C
commit
|
commitdiff
|
tree
2017-11-28
Erik Lindahl
Improve status message
s
for SIMD chec
k
s
commit
|
commitdiff
|
tree
2017-11-27
E
rik
Lindahl
Test more AVX-512F ins
t
ructions before en
a
blin
g
support
commit
|
commitdiff
|
tree
2017-11-24
Erik Lindahl
Detect
AVX-512 FMA units to choose best
SIMD
commit
|
commitdiff
|
tree
2017-11-21
Erik Lindahl
Separa
t
e SIMD
f
lag
d
etectio
n
f
r
om management
commit
|
commitdiff
|
tree
2017-11-12
Er
i
k Lindahl
Only issue FFT warning m
e
ssages
o
n c
h
anges
commit
|
commitdiff
|
tree
2017-09-12
Er
i
k L
i
ndahl
Improve accuracy of SIMD exp
f
or small args
commit
|
commitdiff
|
tree
2017-09-04
Erik
L
inda
h
l
More SI
M
D
m
ath argument
check
i
ng
,
adde
d
unsafe options
commit
|
commitdiff
|
tree
2017-08-28
Er
i
k Linda
h
l
Imp
r
oved SIMD t
e
st d
a
ta to use all
b
i
t
s
commit
|
commitdiff
|
tree
2017-06-26
E
r
ik Lindahl
Fix ARM NE
O
N s
i
md debug builds
commit
|
commitdiff
|
tree
2017-06-13
Eri
k
Lindahl
M
or
e
quotes
commit
|
commitdiff
|
tree
2017-05-23
Erik Lindahl
Upda
t
ed cool quot
e
s
commit
|
commitdiff
|
tree
2017-04-17
Erik
Lindahl
Fi
x
ed AVX-51
2
F
c
ompiler flags
commit
|
commitdiff
|
tree
2017-03-19
Erik Lindahl
Use OpenMP
u
p to 16
thread
s
wi
t
h AMD Ryzen
commit
|
commitdiff
|
tree
2017-03-19
Erik Lindahl
128-bit AVX2 SIMD for
AMD R
y
zen
commit
|
commitdiff
|
tree
2017-03-14
Eri
k
Lindah
l
Fix gcc compiles of
A
VX-512 S
I
MD
commit
|
commitdiff
|
tree
2017-02-09
Erik Lindahl
Work arou
n
d false
xlc-13
.
1
.
5 bug in
SIMD test
commit
|
commitdiff
|
tree
2016-10-17
Er
i
k Li
n
d
ahl
New c
l
as
s
es
for
s
pline int
e
rpolation
t
ab
l
es
commit
|
commitdiff
|
tree
2016-09-07
Erik
L
indahl
Bu
m
p old
e
st
c
make, compiler and CUDA versions required
commit
|
commitdiff
|
tree
2016-08-05
Er
i
k Lindahl
Fix
proper relativ
e
toleranc
e
ch
e
cki
n
g in t
e
stutils
commit
|
commitdiff
|
tree
2016-07-11
E
rik Lindahl
Fix
membed
w
ith part
i
al
r
evert of 29943f
commit
|
commitdiff
|
tree
2016-07-09
Erik Lindahl
Hardwa
r
e de
t
e
ction
clea
n
-up and pre
/
post-pro
c
essing
commit
|
commitdiff
|
tree
2016-07-09
Eri
k
Lindahl
Prevent fr
a
gile use
c
a
s
es o
f
checkpoi
n
t app
e
nding
commit
|
commitdiff
|
tree
2016-07-08
Erik Lindahl
U
pdat
e
a
f
f
inity chec
k
in
g
for Intel compiler
commit
|
commitdiff
|
tree
2016-07-08
Erik
Li
n
dah
l
Add detecti
o
n for ARM
v
7
cyc
l
e counter support
commit
|
commitdiff
|
tree
2016-07-08
Erik Lindahl
Work arou
n
d
compile
r
issu
e
with random test
commit
|
commitdiff
|
tree
2016-07-07
Erik Li
n
d
a
hl
Red
u
ce hwloc & cpuid test require
m
e
n
ts
commit
|
commitdiff
|
tree
2016-06-08
Erik Lindah
l
Di
s
a
bl
e
st
a
tic li
b
cudart on OS X
commit
|
commitdiff
|
tree
2016-06-04
Erik Li
n
dah
l
Check number of items read in mdp
s
tatements
commit
|
commitdiff
|
tree
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