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Update instructions in containers.rst
2020-11-24
Paul Bauer
Merge
b
ranch 'origin/release-2021' i
n
to merge
-
202
1
.
.
.
commit
|
commitdiff
|
tree
2020-11-24
Paul Bauer
Merge branch '
o
rigin
/
release-2020'
i
nto merge-2020
.
.
.
commit
|
commitdiff
|
tree
2020-11-24
P
aul Bauer
F
ix gm
x
h2orde
r
-d
o
ption
commit
|
commitdiff
|
tree
2020-11-23
Paul Bauer
Fix
e
s for In
t
e
l
and
con
t
a
i
ner
build fixes
commit
|
commitdiff
|
tree
2020-11-20
Paul Bauer
F
ix missing copyright changes
commit
|
commitdiff
|
tree
2020-11-12
Paul Baue
r
Fix thread mpi linkin
g
for m
d
run
only bu
i
ld
commit
|
commitdiff
|
tree
2020-11-12
Pa
u
l
Bauer
Restore
c
o
rrect
d
ynamics linking behaviour
commit
|
commitdiff
|
tree
2020-11-11
Paul
Bauer
Fix gmx do_
d
ss
p
CHARMM sup
p
ort
commit
|
commitdiff
|
tree
2020-11-11
P
aul B
a
uer
Fix seg
m
ent
a
tion fault in gm
x
pairdist
commit
|
commitdiff
|
tree
2020-11-11
Paul B
a
uer
Seco
n
d GROMAC
S
202
1
b
e
ta release
commit
|
commitdiff
|
tree
2020-11-10
Paul Bauer
Disable failing NB-LIB listed fo
r
ce
s
te
s
ts
commit
|
commitdiff
|
tree
2020-11-09
Paul Bauer
U
s
e
i
mages
from
G
itLab do
c
ker repo
s
it
o
ry
commit
|
commitdiff
|
tree
2020-11-05
P
a
ul Bauer
Allow pdb2gmx
t
o handle cy
c
lic mo
l
ecules
commit
|
commitdiff
|
tree
2020-11-05
P
a
u
l
Bauer
All
o
w CUDA build tests
to s
u
cc
e
ed without GPU
commit
|
commitdiff
|
tree
2020-11-05
P
aul Bauer
Merge
b
ranch 'origin/
r
ele
a
se-2
0
21
'
into mer
g
e
-20
2
1
.
.
.
commit
|
commitdiff
|
tree
2020-11-05
Paul Bauer
Limit
p
a
r
a
l
lel
i
sm in Github
C
I
commit
|
commitdiff
|
tree
2020-11-03
Pau
l
Bau
e
r
Add
C
lang
CUDA build to
CI
commit
|
commitdiff
|
tree
2020-10-30
Pau
l
B
a
uer
Fix unused varia
b
le wa
r
nings
commit
|
commitdiff
|
tree
2020-10-30
P
aul Bauer
Add
m
issing fix f
o
r Cl
a
n
g CUDA
commit
|
commitdiff
|
tree
2020-10-30
Paul
B
a
uer
F
ix
b
ui
l
d
i
s
sues with Clang CUDA
commit
|
commitdiff
|
tree
2020-10-29
Paul Bau
e
r
Fix CUDA code iss
u
es
commit
|
commitdiff
|
tree
2020-10-29
Pa
u
l Bauer
De
f
ault ini
t
ia
l
iz
e
p
u
l
l data
s
tructures
commit
|
commitdiff
|
tree
2020-10-27
P
aul Ba
u
er
Fix remaining
clang tidy is
s
ues
with Ope
n
CL
commit
|
commitdiff
|
tree
2020-10-27
Paul Bauer
M
ix minor clang-tidy
w
arn
i
ng in double
commit
|
commitdiff
|
tree
2020-10-27
Paul Bau
e
r
Don't d
e
p
l
oy
nigh
t
ly webpages
commit
|
commitdiff
|
tree
2020-10-24
Paul Bauer
Disal
l
ow OpenMP on Wi
n
dows in C
I
commit
|
commitdiff
|
tree
2020-10-22
Pa
u
l Bau
e
r
Fix pro
p
agating flags
f
o
r
Inte
l
+ W
i
ndows
commit
|
commitdiff
|
tree
2020-10-22
Paul Ba
u
er
F
i
x
s
t
a
t
i
c
linking with MS
V
C
commit
|
commitdiff
|
tree
2020-10-22
Paul Baue
r
P
r
epare ma
s
ter for 2
0
22
commit
|
commitdiff
|
tree
2020-10-21
Paul Ba
u
er
O
nly bu
i
ld nb
l
ib
tests when requested
commit
|
commitdiff
|
tree
2020-10-20
Paul Bau
e
r
M
e
rge branch 'origin/re
l
eas
e
-202
0
' into merge
-
release
.
.
.
commit
|
commitdiff
|
tree
2020-10-20
P
a
ul Ba
u
er
Update CI rules
for
re
l
ease-
2
021
commit
|
commitdiff
|
tree
2020-10-20
Paul Bauer
GROMACS
2
021
f
i
rst b
e
ta release
commit
|
commitdiff
|
tree
2020-10-20
Paul Bauer
Reve
r
t "GROMACS 202
1
first beta release"
commit
|
commitdiff
|
tree
2020-10-20
Paul Ba
u
er
GROMAC
S
2021 first beta release
commit
|
commitdiff
|
tree
2020-10-19
Pa
u
l Bauer
Add
release highlights
commit
|
commitdiff
|
tree
2020-10-19
Pau
l
Bau
e
r
R
e
vert "Add muparser
and CMa
k
e hand
l
i
n
g
"
commit
|
commitdiff
|
tree
2020-10-18
P
a
ul Ba
u
e
r
E
nable MSV
C
and
M
a
cOSX testi
n
g on Github
commit
|
commitdiff
|
tree
2020-10-13
P
au
l
B
a
uer
Fix
missing copyright and r
e
lease notes
commit
|
commitdiff
|
tree
2020-10-13
Paul B
a
uer
Do
not validate
build for external source
mana
g
ement
commit
|
commitdiff
|
tree
2020-10-09
Pa
u
l Bauer
Remove under
t
he
h
ood edi
t
i
ng of pdb files
commit
|
commitdiff
|
tree
2020-10-07
Paul Bauer
F
i
x
excessive h
a
c
kblock warning output
commit
|
commitdiff
|
tree
2020-10-07
Paul B
a
uer
F
ix
downl
o
ad l
o
cat
i
o
n for reg
r
essiontests
commit
|
commitdiff
|
tree
2020-10-07
P
aul Bauer
F
ix SYCL compilation
commit
|
commitdiff
|
tree
2020-10-07
Pau
l
Bau
e
r
M
e
rge branch 'origin/release-2020' into merg
e
-re
l
ease
.
.
.
commit
|
commitdiff
|
tree
2020-10-06
Paul Bauer
Set proper
d
evic
e
Ven
d
o
r
with SYCL
commit
|
commitdiff
|
tree
2020-10-06
Paul Bauer
Prepare for GROM
A
CS 2
0
20
.
5
commit
|
commitdiff
|
tree
2020-10-06
P
aul Bauer
GROMACS
v
ersion 202
0
.
4
commit
|
commitdiff
|
tree
2020-10-05
Paul Bauer
Always se
t
DeviceVend
o
r
commit
|
commitdiff
|
tree
2020-10-05
Pa
u
l Bauer
Fix
d
ebug message
lo
c
ation
commit
|
commitdiff
|
tree
2020-10-05
Paul Bau
e
r
Add mupa
r
ser and C
M
ake
ha
n
dling
commit
|
commitdiff
|
tree
2020-10-05
Paul Bauer
Fix
d
ox
y
gen warnings
commit
|
commitdiff
|
tree
2020-10-02
P
aul Bauer
Work-a
r
o
u
nd for
RDRAND returning
-1 on Ryzen
commit
|
commitdiff
|
tree
2020-10-02
Paul
B
auer
R
emove an
o
nymous namespace i
n
AR
M
S
VE header
commit
|
commitdiff
|
tree
2020-10-01
P
a
u
l Bauer
Br
e
ak
up MP
I
tes
t
s
commit
|
commitdiff
|
tree
2020-10-01
Paul
B
auer
Fix
p
ost merge
a
c
c
epta
n
ce pipeline fo
r
release-20
2
0
commit
|
commitdiff
|
tree
2020-09-30
Paul B
a
uer
Update CI
o
n
2
0
20
bra
n
c
h
commit
|
commitdiff
|
tree
2020-09-30
Pau
l
Bauer
Revert "Add new G
R
O
M
AC
S
l
o
g
o and use
i
t
in the manual
.
"
commit
|
commitdiff
|
tree
2020-09-30
Paul Bauer
Add new GR
O
M
ACS log
o
and use it in the
m
a
n
ual
.
commit
|
commitdiff
|
tree
2020-09-29
Paul
Bauer
Fix
d
oxygen war
n
ings
commit
|
commitdiff
|
tree
2020-09-29
Paul B
a
u
er
A
dd post submi
t
rules t
o
C
I
commit
|
commitdiff
|
tree
2020-09-28
P
aul Bauer
Change do
w
nload for regressiontest away from
g
errit
commit
|
commitdiff
|
tree
2020-09-25
Paul Bauer
F
i
x bad logic in regressiontest branch selection
commit
|
commitdiff
|
tree
2020-09-24
Paul Baue
r
Allo
w
d
e
ploym
e
nt o
f
nigh
t
ly webp
a
ge
to server
commit
|
commitdiff
|
tree
2020-09-22
Paul Ba
u
e
r
M
a
ke On
e
api us
e
CCache again
commit
|
commitdiff
|
tree
2020-09-21
Paul Bau
e
r
Fix sc
r
ipt
building all CI con
t
ainers and add gcovr
commit
|
commitdiff
|
tree
2020-09-21
Paul B
a
u
er
Add OpenS
S
H t
o
docs build images
commit
|
commitdiff
|
tree
2020-09-16
Paul
B
auer
B
reak off
s
ome tests
f
rom mdrun
t
ests
commit
|
commitdiff
|
tree
2020-09-15
Paul Bauer
Break
of
f
s
o
me tests from mdrun tes
t
s
commit
|
commitdiff
|
tree
2020-09-15
Pa
u
l Bau
e
r
Fix missing
installed file
s
f
o
r OpenCL PME
commit
|
commitdiff
|
tree
2020-09-15
Paul
B
a
uer
Fix missin
g
include for MSV
C
build
commit
|
commitdiff
|
tree
2020-09-11
Paul
B
au
e
r
Remove leftover data
a
f
ter refactoring
commit
|
commitdiff
|
tree
2020-09-11
Paul Bau
e
r
Fix doxy
g
en fo
r
un
u
se
d
par
a
meters
.
commit
|
commitdiff
|
tree
2020-09-11
Pau
l
Bauer
Force use of Python
3
in Doxygen CMak
e
F
i
le
s
commit
|
commitdiff
|
tree
2020-09-10
Paul
Ba
u
e
r
Mino
r
f
i
x t
o
the
printout for regtest builds
commit
|
commitdiff
|
tree
2020-09-08
P
a
ul Bauer
Mo
v
e densi
t
yfitting t
o
it
s
own directory
commit
|
commitdiff
|
tree
2020-09-07
Paul
B
a
u
er
Fix
output s
t
ring for
G
PU sup
p
ort
commit
|
commitdiff
|
tree
2020-08-31
Paul Ba
u
er
Merge
b
ranch
'
release-2020
'
into maste
r
commit
|
commitdiff
|
tree
2020-08-17
Paul Bauer
Fix
c
lang-format
commit
|
commitdiff
|
tree
2020-08-17
Paul
B
auer
Redu
c
e artifac
t
size
commit
|
commitdiff
|
tree
2020-07-27
Pau
l
B
a
uer
R
e
vert "Change builds that use fail
i
ng docker contain
e
rs"
commit
|
commitdiff
|
tree
2020-07-09
Paul Bauer
Prepare for GROMACS
2020
.
4
commit
|
commitdiff
|
tree
2020-07-09
Paul Bauer
GROMACS ve
r
sion
2
0
20
.
3
commit
|
commitdiff
|
tree
2020-07-07
Paul Bau
e
r
Move
densityfitting to its ow
n
directory
commit
|
commitdiff
|
tree
2020-07-01
Pau
l
Bauer
Re
v
ert
"
Ma
k
e e
v
erything run on G
i
tlab inf
r
ast
r
ucture
.
"
commit
|
commitdiff
|
tree
2020-07-01
Paul Bauer
Change b
u
ilds
that
u
se
failing do
c
ker
c
onta
i
ners
commit
|
commitdiff
|
tree
2020-07-01
Pau
l
B
auer
Disable failing
b
uilds for m
a
ste
r
branch
commit
|
commitdiff
|
tree
2020-06-29
Paul
Bauer
M
a
ke everythin
g
run on
Gitlab infrastructur
e
.
commit
|
commitdiff
|
tree
2020-06-26
Paul Ba
u
er
M
a
ke DSSP def
a
ult pa
t
h
c
on
f
igurable
commit
|
commitdiff
|
tree
2020-06-26
Paul Bauer
Minor cleanup
in g
m
x bar
commit
|
commitdiff
|
tree
2020-06-24
Paul
Bauer
Fix warning
about needi
n
g
config
.
h
commit
|
commitdiff
|
tree
2020-06-18
Paul Bauer
Fix
missing #i
n
clude <string>
commit
|
commitdiff
|
tree
2020-06-12
P
aul Bauer
Fix false initialization valu
e
s in gmx hbon
d
commit
|
commitdiff
|
tree
2020-06-11
Paul Ba
u
er
Fix f
a
ls
e
init
i
alization
values in gmx h
b
ond
commit
|
commitdiff
|
tree
2020-06-10
Paul Bauer
Proper fix for gmx do_dssp
commit
|
commitdiff
|
tree
2020-06-09
Pa
u
l
B
auer
E
x
tract COM h
a
n
d
li
n
g fr
o
m trjconv
commit
|
commitdiff
|
tree
2020-06-05
Paul Bauer
Fix segm
e
nt
a
tion fa
u
lt when rea
d
ing energ
y
terms
commit
|
commitdiff
|
tree
2020-06-05
Paul Bauer
Use
m
o
lt
y
pe directly for
o
b
t
ai
n
ing residueAtomRanges
commit
|
commitdiff
|
tree
2020-06-05
P
aul
B
au
e
r
Fix failing webpage bui
l
d
commit
|
commitdiff
|
tree
2020-06-04
Pa
u
l
Bauer
A
dd ability
t
o
chose regression
t
es
t
commit and
branch
commit
|
commitdiff
|
tree
next