Precalculate pbc shift for analysis nbsearch
[gromacs/AngularHB.git] / doxygen / CMakeLists.txt
blob7401e9560c5e12c6c0c1183f4e7a37d44bc715b1
2 # This file is part of the GROMACS molecular simulation package.
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35 include(gmxOptionUtilities)
37 find_package(Doxygen QUIET)
38 if (DOXYGEN_FOUND)
39     # This logic closely follows that found in FindDoxygen.cmake for dot,
40     # except that the PATH variable is not cached.
41     FIND_PROGRAM(DOXYGEN_MSCGEN_EXECUTABLE
42         NAMES mscgen
43         DOC "Message sequence chart renderer tool (http://www.mcternan.me.uk/mscgen/)")
44     if (DOXYGEN_MSCGEN_EXECUTABLE)
45         set(DOXYGEN_MSCGEN_FOUND TRUE)
46         get_filename_component(DOXYGEN_MSCGEN_PATH "${DOXYGEN_MSCGEN_EXECUTABLE}" PATH)
47     endif()
48     mark_as_advanced(DOXYGEN_MSCGEN_EXECUTABLE)
49 endif()
51 gmx_dependent_option(
52     GMX_COMPACT_DOXYGEN
53     "Skip parts of Doxygen documentation (in particular, many graphs) to save disk space and time"
54     OFF
55     DOXYGEN_FOUND)
56 mark_as_advanced(GMX_COMPACT_DOXYGEN)
58 find_package(PythonInterp)
59 set(USE_PYTHON_SCRIPTS OFF)
60 if (PYTHONINTERP_FOUND AND NOT PYTHON_VERSION_STRING VERSION_LESS "2.6")
61     set(USE_PYTHON_SCRIPTS ON)
62 endif()
64 add_custom_target(find-installed-headers
65     COMMAND ${CMAKE_COMMAND}
66         -D SRCDIR=${CMAKE_SOURCE_DIR}
67         -D BUILDDIR=${CMAKE_BINARY_DIR}
68         -D OUTFILE=${CMAKE_CURRENT_BINARY_DIR}/installed-headers.txt
69         -P ${CMAKE_CURRENT_SOURCE_DIR}/getInstalledHeaders.cmake
70     COMMENT "Generating installed headers list" VERBATIM)
72 ########################################################################
73 # Doxygen configuration
74 ########################################################################
75 if (DOXYGEN_FOUND)
76     FILE(GLOB NB_KERNEL_DIRS
77          ${CMAKE_SOURCE_DIR}/src/gromacs/gmxlib/nonbonded/nb_kernel_*/)
78     LIST(REMOVE_ITEM NB_KERNEL_DIRS
79          ${CMAKE_SOURCE_DIR}/src/gromacs/gmxlib/nonbonded/nb_kernel_c)
80     FOREACH(NB_KERNEL_DIR ${NB_KERNEL_DIRS})
81         SET(NB_KERNEL_DIRS_TO_IGNORE_IN_DOXYGEN
82             "${NB_KERNEL_DIRS_TO_IGNORE_IN_DOXYGEN} \\\n                         ${NB_KERNEL_DIR}")
83     ENDFOREACH(NB_KERNEL_DIR)
84     set(DOXYGEN_SECTIONS "")
85     CONFIGURE_FILE(Doxyfile-common.cmakein Doxyfile-common)
86     CONFIGURE_FILE(Doxyfile-full.cmakein Doxyfile-full)
87     CONFIGURE_FILE(Doxyfile-lib.cmakein Doxyfile-lib)
88     CONFIGURE_FILE(Doxyfile-user.cmakein Doxyfile-user)
89     CONFIGURE_FILE(Doxyfile-xml.cmakein Doxyfile-xml)
91     if (GMX_COMPACT_DOXYGEN)
92         FILE(APPEND ${CMAKE_CURRENT_BINARY_DIR}/Doxyfile-common
93              "@INCLUDE   = ${CMAKE_CURRENT_SOURCE_DIR}/Doxyfile-compact\n")
94     endif()
96     FILE(COPY index.html DESTINATION ${CMAKE_CURRENT_BINARY_DIR})
97     configure_file(RunDoxygen.cmake.cmakein RunDoxygen.cmake @ONLY)
98     gmx_configure_version_file(Doxyfile-version.cmakein Doxyfile-version
99                                TARGET doxygen-version)
100     add_custom_target(doc-full
101         ${CMAKE_COMMAND} -DDOCTYPE=full -P RunDoxygen.cmake
102         WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
103         COMMENT "Generating full documentation with Doxygen" VERBATIM)
104     add_custom_target(doc-lib
105         ${CMAKE_COMMAND} -DDOCTYPE=lib -P RunDoxygen.cmake
106         WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
107         COMMENT "Generating library documentation with Doxygen" VERBATIM)
108     add_custom_target(doc-user
109         ${CMAKE_COMMAND} -DDOCTYPE=user -P RunDoxygen.cmake
110         WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
111         COMMENT "Generating public API documentation with Doxygen" VERBATIM)
112     add_custom_target(doc-xml
113         ${CMAKE_COMMAND} -DDOCTYPE=xml -P RunDoxygen.cmake
114         WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
115         COMMENT "Extracting Doxygen documentation to XML" VERBATIM)
116     add_custom_target(doc-all)
117     add_dependencies(doc-all doc-full doc-lib doc-user)
118     add_dependencies(doc-full doxygen-version)
119     add_dependencies(doc-lib  doxygen-version)
120     add_dependencies(doc-user doxygen-version)
121     add_dependencies(doc-xml  doxygen-version)
123     if (USE_PYTHON_SCRIPTS)
124         # TODO: Consider whether this is the best name and location for this
125         # code, since not all of it is Doxygen-specific (but nearly all of it
126         # relies on the Doxygen XML documentation).
127         set(doc_check_command
128             ${PYTHON_EXECUTABLE} ${CMAKE_CURRENT_SOURCE_DIR}/doxygen-check.py
129             -S ${CMAKE_SOURCE_DIR} -B ${CMAKE_BINARY_DIR}
130             --installed ${CMAKE_CURRENT_BINARY_DIR}/installed-headers.txt
131             -l ${CMAKE_CURRENT_BINARY_DIR}/doxygen-check.log
132             --ignore ${CMAKE_CURRENT_SOURCE_DIR}/suppressions.txt
133             --ignore-cycles ${CMAKE_CURRENT_SOURCE_DIR}/cycle-suppressions.txt)
134         add_custom_target(doc-check COMMAND ${doc_check_command}
135             COMMENT "Checking Doxygen documentation" VERBATIM)
136         add_dependencies(doc-check doc-xml find-installed-headers)
138         set(graphdir ${CMAKE_CURRENT_BINARY_DIR}/depgraphs)
139         set(dep_graphs_command_python
140             ${PYTHON_EXECUTABLE} ${CMAKE_CURRENT_SOURCE_DIR}/graphbuilder.py
141             -S ${CMAKE_SOURCE_DIR} -B ${CMAKE_BINARY_DIR}
142             --installed ${CMAKE_CURRENT_BINARY_DIR}/installed-headers.txt
143             --ignore-cycles ${CMAKE_CURRENT_SOURCE_DIR}/cycle-suppressions.txt
144             -o ${CMAKE_CURRENT_BINARY_DIR}/depgraphs)
145         set(dep_graphs_command_dot
146             ${CMAKE_COMMAND} -DGRAPHDIR=${graphdir}
147             -DDOT_EXECUTABLE=${DOXYGEN_DOT_EXECUTABLE}
148             -P ${CMAKE_CURRENT_SOURCE_DIR}/generateGraphs.cmake)
149         add_custom_target(dep-graphs
150             COMMAND ${dep_graphs_command_python}
151             COMMAND ${dep_graphs_command_dot}
152             COMMENT "Generating include dependency graphs" VERBATIM)
153         add_dependencies(dep-graphs doc-xml find-installed-headers)
155         # These targets are the same as above, but they don't rerun the
156         # dependencies each time, making it faster and more convenient for
157         # testing.
158         add_custom_target(doc-check-fast COMMAND ${doc_check_command}
159             COMMENT "Checking Doxygen documentation" VERBATIM)
160         add_custom_target(dep-graphs-fast
161             COMMAND ${dep_graphs_command_python}
162             COMMAND ${dep_graphs_command_dot}
163             COMMENT "Generating include dependency graphs" VERBATIM)
164     endif()
165 endif()