Move init of specialized dynamical algorithms to do_md
commit29943fe59dca471b202e72373c7c4a0133a185d1
authorMark Abraham <mark.j.abraham@gmail.com>
Fri, 19 Feb 2016 19:00:28 +0000 (19 20:00 +0100)
committerGerrit Code Review <gerrit@gerrit.gromacs.org>
Mon, 22 Feb 2016 09:26:04 +0000 (22 10:26 +0100)
tree770d85cd3b426984cccd4ad2d9c392a9290d5140
parent65e33d97eb2cb8e2192831c614aae230b195711f
Move init of specialized dynamical algorithms to do_md

These algorithms only make sense with dynamical integrators, so they
should be initialized in do_md.

Noted TODO for essential dynamics, which has a non-trivial interaction
with the constraint code, and no test coverage.

Noted TODO for swapcoords, which has no clean-up code.

Change-Id: I584ad264ef1b0ecfcb4fb95bf7b595a02d668114
src/gromacs/mdlib/integrator.h
src/gromacs/mdlib/minimize.cpp
src/gromacs/mdlib/tpi.cpp
src/programs/mdrun/md.cpp
src/programs/mdrun/runner.cpp