Broke up copyright.*
commit5922c55f2bee75b57a9d2ce0a5cd9d38ff55702e
authorMark Abraham <mark.j.abraham@gmail.com>
Wed, 11 Nov 2015 21:23:35 +0000 (11 22:23 +0100)
committerGerrit Code Review <gerrit@gerrit.gromacs.org>
Sat, 12 Dec 2015 03:17:02 +0000 (12 04:17 +0100)
tree204a88c38c83f88db9703b034c17b914f85719ab
parentfa14fefdbd310eb63a87a944d777aa38a1ea6bab
Broke up copyright.*

Split unrelated content into binaryinformation.* and pleasecite.*, and
move them to utility/.  This removes functionality from fileio that does
not really belong there, and helps in removing cyclic dependencies.

One new cyclic dependency suppressed for now; it will disappear with
simplification of gmx_invsqrt().

Part of #1415.

Change-Id: I65f07768d46852783d30cf1a28dd22d614dde125
50 files changed:
docs/doxygen/cycle-suppressions.txt
src/gromacs/commandline/cmdlinemodulemanager-impl.h
src/gromacs/fileio/matio.cpp
src/gromacs/fileio/xvgr.cpp
src/gromacs/gmxana/gmx_anadock.cpp
src/gromacs/gmxana/gmx_analyze.cpp
src/gromacs/gmxana/gmx_angle.cpp
src/gromacs/gmxana/gmx_densorder.cpp
src/gromacs/gmxana/gmx_dielectric.cpp
src/gromacs/gmxana/gmx_dipoles.cpp
src/gromacs/gmxana/gmx_dos.cpp
src/gromacs/gmxana/gmx_dyecoupl.cpp
src/gromacs/gmxana/gmx_energy.cpp
src/gromacs/gmxana/gmx_hbond.cpp
src/gromacs/gmxana/gmx_nmeig.cpp
src/gromacs/gmxana/gmx_pme_error.cpp
src/gromacs/gmxana/gmx_rms.cpp
src/gromacs/gmxana/gmx_sans.cpp
src/gromacs/gmxana/gmx_saxs.cpp
src/gromacs/gmxana/gmx_trjconv.cpp
src/gromacs/gmxana/gmx_wham.cpp
src/gromacs/gmxana/pp2shift.cpp
src/gromacs/gmxlib/disre.cpp
src/gromacs/gmxlib/main.cpp
src/gromacs/gmxlib/network.cpp
src/gromacs/gmxlib/orires.cpp
src/gromacs/gmxlib/readinp.cpp
src/gromacs/gmxpreprocess/pdb2top.cpp
src/gromacs/gmxpreprocess/x2top.cpp
src/gromacs/mdlib/clincs.cpp
src/gromacs/mdlib/constr.cpp
src/gromacs/mdlib/forcerec.cpp
src/gromacs/mdlib/mdoutf.cpp
src/gromacs/mdlib/rf_util.cpp
src/gromacs/mdlib/sim_util.cpp
src/gromacs/pulling/pull.cpp
src/gromacs/pulling/pull_rotation.cpp
src/gromacs/swap/swapcoords.cpp
src/gromacs/topology/atomprop.cpp
src/gromacs/trajectoryanalysis/modules/freevolume.cpp
src/gromacs/trajectoryanalysis/modules/sasa.cpp
src/gromacs/utility/CMakeLists.txt
src/gromacs/utility/binaryinformation.cpp [new file with mode: 0644]
src/gromacs/utility/binaryinformation.h [moved from src/gromacs/fileio/copyrite.h with 93% similarity]
src/gromacs/utility/cuda_version_information.cu [copied from src/gromacs/gmxlib/cuda_tools/copyrite_gpu.cu with 97% similarity]
src/gromacs/utility/cuda_version_information.h [copied from src/gromacs/gmxlib/cuda_tools/copyrite_gpu.cu with 71% similarity]
src/gromacs/utility/pleasecite.cpp [moved from src/gromacs/fileio/copyrite.cpp with 62% similarity]
src/gromacs/utility/pleasecite.h [moved from src/gromacs/gmxlib/cuda_tools/copyrite_gpu.cu with 71% similarity]
src/programs/mdrun/repl_ex.cpp
src/programs/mdrun/runner.cpp