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2016-03-31	Berk Hess	Add option for external pull potential	commit \| commitdiff \| tree
2016-03-26	Berk Hess	Add real/SIMD template for LJ-14 pairs	commit \| commitdiff \| tree
2016-03-22	Berk Hess	Make gmx vanhove work without PBC	commit \| commitdiff \| tree
2016-03-22	Berk Hess	LJ combination rule kernels for CUDA	commit \| commitdiff \| tree
2016-03-21	Berk Hess	Moved pull initialization back to mdrunner	commit \| commitdiff \| tree
2016-03-12	Berk Hess	Split off Fermi kernel from CUDA kernel	commit \| commitdiff \| tree
2016-03-04	Berk Hess	Converted csettle() to use real/SimdReal template	commit \| commitdiff \| tree
2016-03-03	Berk Hess	Use SIMD transpose scatter in bondeds	commit \| commitdiff \| tree
2016-03-03	Berk Hess	Use rvec4 for listed force buffer	commit \| commitdiff \| tree
2016-02-27	Berk Hess	Remove epsfac from GPU kernel inner-loops	commit \| commitdiff \| tree
2016-02-27	Berk Hess	Minor code reordering in GPU kernels	commit \| commitdiff \| tree
2016-02-26	Berk Hess	Fix compilation with Simd4Float, without Simd4Double	commit \| commitdiff \| tree
2016-02-19	Berk Hess	Fix excessive list splitting	commit \| commitdiff \| tree
2016-02-17	Berk Hess	Renamed nbnxn static const ints	commit \| commitdiff \| tree
2016-02-11	Berk Hess	Add SIMD version of pbc_dx_aiuc	commit \| commitdiff \| tree
2016-02-09	Berk Hess	Replaced nbnxn search+grid simd macros	commit \| commitdiff \| tree
2016-02-07	Berk Hess	Fix incorrect cmap parsing	commit \| commitdiff \| tree
2016-02-05	Berk Hess	Fix incorrect cmap parsing	commit \| commitdiff \| tree
2016-02-03	Berk Hess	Replaced literals in nbnxn lists by ints	commit \| commitdiff \| tree
2016-02-03	Berk Hess	Fix mdrun removing Verlet buffer with EM	commit \| commitdiff \| tree
2016-02-03	Berk Hess	Fix SETTLE error handling	commit \| commitdiff \| tree
2016-01-29	Berk Hess	Added documentation for pme grid indexing	commit \| commitdiff \| tree
2016-01-29	Berk Hess	Fix TPI ignoring PME mesh contributions.	commit \| commitdiff \| tree
2016-01-29	Berk Hess	Update -ntomp_pme -npme check	commit \| commitdiff \| tree
2016-01-29	Berk Hess	Add check for double perturbation	commit \| commitdiff \| tree
2016-01-29	Berk Hess	Fix LINCS triangle constraint thread issue	commit \| commitdiff \| tree
2016-01-28	Berk Hess	Update pair-list buffer manual	commit \| commitdiff \| tree
2016-01-24	Berk Hess	Fix exact continuation from non-energy steps	commit \| commitdiff \| tree
2016-01-24	Berk Hess	Fix energy file continuation with md-vv	commit \| commitdiff \| tree
2016-01-24	Berk Hess	Fix energy average with continuation	commit \| commitdiff \| tree
2016-01-08	Berk Hess	Fix PME load balancing skipping a setup	commit \| commitdiff \| tree
2015-12-29	Berk Hess	Correct vector check of gmx check	commit \| commitdiff \| tree
2015-12-27	Berk Hess	Reorganized domdec initialization	commit \| commitdiff \| tree
2015-12-20	Berk Hess	Merge release-5-1 into master	commit \| commitdiff \| tree
2015-12-19	Berk Hess	Bring performance estimation up to date	commit \| commitdiff \| tree
2015-12-17	Berk Hess	Removed topology pointers from DD struct	commit \| commitdiff \| tree
2015-12-16	Berk Hess	Add one element to state rvec arrays	commit \| commitdiff \| tree
2015-12-12	Berk Hess	Removed unused mdrun option -dn	commit \| commitdiff \| tree
2015-12-11	Berk Hess	Fix bug with pull group weights	commit \| commitdiff \| tree
2015-12-07	Berk Hess	Moved pull params to mdtypes/pull-params.h	commit \| commitdiff \| tree
2015-12-02	Berk Hess	Increase pdb chain ids to 62 in output	commit \| commitdiff \| tree
2015-12-02	Berk Hess	Refactored set_pbc_dd	commit \| commitdiff \| tree
2015-12-02	Berk Hess	Made t_inputrec const in PME load balancing	commit \| commitdiff \| tree
2015-12-01	Berk Hess	Pull group count for coords stored in tpr	commit \| commitdiff \| tree
2015-11-19	Berk Hess	Removed mdrun fatal_error with P3M-AD	commit \| commitdiff \| tree
2015-11-18	Berk Hess	Removed Reaction-Field-nec	commit \| commitdiff \| tree
2015-11-14	Berk Hess	Optimized the bonded thread force reduction	commit \| commitdiff \| tree
2015-11-11	Berk Hess	Fixed (harmless) fp exception in wallcycle_sum	commit \| commitdiff \| tree
2015-11-09	Berk Hess	Correct LINCS dHdl contribution	commit \| commitdiff \| tree
2015-11-03	Berk Hess	Fix no wallcycle support	commit \| commitdiff \| tree
2015-11-03	Berk Hess	Removed nbnxn kernel blendv optimization	commit \| commitdiff \| tree
2015-11-02	Berk Hess	Fix intermolecular interactions with small mols	commit \| commitdiff \| tree
2015-10-15	Berk Hess	Fixed nbnxn_4xN performance regression	commit \| commitdiff \| tree
2015-10-07	Berk Hess	Fix bugs with intermol interactions and DD	commit \| commitdiff \| tree
2015-10-01	Berk Hess	Removed CUDA polling wait	commit \| commitdiff \| tree
2015-09-27	Berk Hess	Move gmx_domdec_comm_t definition	commit \| commitdiff \| tree
2015-09-22	Berk Hess	Removed useless multiple shifts in pbc.cpp	commit \| commitdiff \| tree
2015-09-16	Berk Hess	Split nbnxn_grid.c off from nbnxn_search.c	commit \| commitdiff \| tree
2015-09-15	Berk Hess	Detect incorrect cycle counting	commit \| commitdiff \| tree
2015-08-25	Berk Hess	Simplify changing the tpx_version	commit \| commitdiff \| tree
2015-08-14	Berk Hess	Make mdrun -nt work again	commit \| commitdiff \| tree
2015-08-13	Berk Hess	Added set_pull_coord_reference_value	commit \| commitdiff \| tree
2015-08-12	Berk Hess	Added const qualifiers to core MD routines	commit \| commitdiff \| tree
2015-07-08	Berk Hess	Separated bonded and Ewald correction threading	commit \| commitdiff \| tree
2015-07-06	Berk Hess	Fix too small GPU pair count estimates	commit \| commitdiff \| tree
2015-07-06	Berk Hess	Fix bug in GPU list balancing	commit \| commitdiff \| tree
2015-07-05	Berk Hess	Fix DD DLB state issue	commit \| commitdiff \| tree
2015-07-05	Berk Hess	Fix bug in GPU list balancing	commit \| commitdiff \| tree
2015-07-04	Berk Hess	Obey OpenMP thread count limit with tMPI	commit \| commitdiff \| tree
2015-07-04	Berk Hess	Fix two PME DLB trigger issues	commit \| commitdiff \| tree
2015-07-03	Berk Hess	Correct grompp pull warning message	commit \| commitdiff \| tree
2015-06-30	Berk Hess	Fix inconsistent OpenMP automation	commit \| commitdiff \| tree
2015-06-30	Berk Hess	enabled 1 PP + 1 PME node	commit \| commitdiff \| tree
2015-06-30	Berk Hess	Add checks for inefficient resource usage	commit \| commitdiff \| tree
2015-06-29	Berk Hess	Improve DLB+PME tuning with GPUs	commit \| commitdiff \| tree
2015-06-27	Berk Hess	Improve pair search thread load balance	commit \| commitdiff \| tree
2015-06-27	Berk Hess	Improved the intra-GPU load balancing	commit \| commitdiff \| tree
2015-06-27	Berk Hess	Reduce the use of nbnxn_consts.h	commit \| commitdiff \| tree
2015-06-27	Berk Hess	Corrected nstcalclr/nstfep/nst_repl_ex checks	commit \| commitdiff \| tree
2015-06-26	Berk Hess	Fixed Verlet buffer issue with 2-wide SIMD	commit \| commitdiff \| tree
2015-06-25	Berk Hess	Intermolecular bonded interaction support added	commit \| commitdiff \| tree
2015-06-25	Berk Hess	Reenabled SIMD kernels without cut-offs	commit \| commitdiff \| tree
2015-06-24	Berk Hess	GPU Ewald table kernel now uses CPU spacing	commit \| commitdiff \| tree
2015-06-24	Berk Hess	Avoid GPU selection with GPU emulation	commit \| commitdiff \| tree
2015-06-24	Berk Hess	Minor reformatting of SIMD mismatch message	commit \| commitdiff \| tree
2015-06-24	Berk Hess	Add sugar to print empty line in printBinaryInformation	commit \| commitdiff \| tree
2015-06-22	Berk Hess	Fix g_energy average/RMSD bug	commit \| commitdiff \| tree
2015-06-22	Berk Hess	Update launch configuration for physical nodes	commit \| commitdiff \| tree
2015-06-22	Berk Hess	Avoid fp exceptions in pair search debug	commit \| commitdiff \| tree
2015-06-22	Berk Hess	Replaced hardware threads by logical cores in output	commit \| commitdiff \| tree
2015-06-18	Berk Hess	Reduced the cost of the pull communication	commit \| commitdiff \| tree
2015-06-17	Berk Hess	Refactored pull data structures	commit \| commitdiff \| tree
2015-06-16	Berk Hess	Added missing DD cycle counting	commit \| commitdiff \| tree
2015-06-16	Berk Hess	Automated the -gpu_id option	commit \| commitdiff \| tree
2015-06-14	Berk Hess	Refactored mdrun resource division	commit \| commitdiff \| tree
2015-06-13	Berk Hess	Hardware reporting now covers all nodes	commit \| commitdiff \| tree
2015-06-05	Berk Hess	Don't use PME ranks with GPUs and -npme=-1	commit \| commitdiff \| tree
2015-05-27	Berk Hess	Refactoring of PME load balancing	commit \| commitdiff \| tree
2015-05-23	Berk Hess	Removed static from variables in gmx_lapack	commit \| commitdiff \| tree
2015-05-16	Berk Hess	LINCS thread tasks can now be independent	commit \| commitdiff \| tree
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