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2016-03-31	Berk Hess	Add option for external pull potential	commit \| commitdiff \| tree
2016-03-31	Szilárd Páll	refactor CUDA texture-based table initialization	commit \| commitdiff \| tree
2016-03-31	Szilard Pall	avoid CPU oversubscription with GPUs	commit \| commitdiff \| tree
2016-03-30	Szilárd Páll	LJ combination rule kernels for OpenCL	commit \| commitdiff \| tree
2016-03-30	Szilárd Páll	Re-enable i-atom type local mem prefetch in OpenCL	commit \| commitdiff \| tree
2016-03-30	Teemu Murtola	Make includesorter.py work with Doxygen 1.8.10+	commit \| commitdiff \| tree
2016-03-30	Szilárd Páll	Describe AMD APPSDK 3.0 issues in the guide	commit \| commitdiff \| tree
2016-03-30	Teemu Murtola	Fix error reporting for documentation build	commit \| commitdiff \| tree
2016-03-30	Mark Abraham	Clean up vsite code	commit \| commitdiff \| tree
2016-03-22	Carsten Kutzner	Clean-up code for swapcoords.	commit \| commitdiff \| tree
2016-03-22	Berk Hess	LJ combination rule kernels for CUDA	commit \| commitdiff \| tree
2016-03-19	Mark Abraham	Add more const correctness	commit \| commitdiff \| tree
2016-03-19	Mark Abraham	Improved some mdrun integration tests	commit \| commitdiff \| tree
2016-03-18	Viveca Lindahl	Added pull coordinate geometry angle.	commit \| commitdiff \| tree
2016-03-18	David van der Spoel	Fixed division by zero in polarize.	commit \| commitdiff \| tree
2016-03-18	Nicholas Breen	Various minor spelling fixes - messages and code comments...	commit \| commitdiff \| tree
2016-03-17	Carsten Kutzner	Fix membed initialization	commit \| commitdiff \| tree
2016-03-10	Mark Abraham	Require 2015 version for MSVC	commit \| commitdiff \| tree
2016-02-27	Berk Hess	Remove epsfac from GPU kernel inner-loops	commit \| commitdiff \| tree
2016-02-23	Mark Abraham	Replace cppcheck suppression in checkpoint code	commit \| commitdiff \| tree
2016-02-16	Mark Abraham	Merge branch release-5-0 into release-5-1	commit \| commitdiff \| tree
2016-02-14	Mark Abraham	Re-generated eps for figure 4.8	commit \| commitdiff \| tree
2016-02-10	Mark Abraham	Re-remove *_stochd_state function declarations	commit \| commitdiff \| tree
2016-02-10	Erik Lindahl	Scalar functions mimicking the SIMD interface	commit \| commitdiff \| tree
2016-02-08	Mark Abraham	Merge branch release-5-0 into release-5-1	commit \| commitdiff \| tree
2016-02-06	Mark Abraham	Merge branch release-5-1	commit \| commitdiff \| tree
2016-02-03	Mark Abraham	Bumped patch number to prepare for future 5.1.3 release	commit \| commitdiff \| tree
2016-02-03	Mark Abraham	Version 5.1.2	commit \| commitdiff \| tree
2016-02-03	Mark Abraham	Merge release-5-0 into release-5-1	commit \| commitdiff \| tree
2016-01-28	Mark Abraham	Merge branch release-5-1	commit \| commitdiff \| tree
2016-01-28	Mark Abraham	Avoid FP exception	commit \| commitdiff \| tree
2016-01-27	Mark Abraham	Merge branch release-5-1	commit \| commitdiff \| tree
2016-01-27	Mark Abraham	Remove bNotLastFrame	commit \| commitdiff \| tree
2016-01-26	Mark Abraham	Fix default for GMX_USE_NVML	commit \| commitdiff \| tree
2016-01-25	Mark Abraham	Merge branch release-5-1	commit \| commitdiff \| tree
2016-01-12	Mark Abraham	Merge branch release-5-0 into release-5-1	commit \| commitdiff \| tree
2016-01-08	Mark Abraham	Merge branch release-5-1	commit \| commitdiff \| tree
2016-01-07	Mark Abraham	Fix some mdrun header dependencies	commit \| commitdiff \| tree
2016-01-07	Mark Abraham	Avoid more C++ bindings for MPI	commit \| commitdiff \| tree
2016-01-07	Mark Abraham	Stop using UNDEFINED as name of a symbol	commit \| commitdiff \| tree
2016-01-07	Mark Abraham	Remove fields used only for SD2	commit \| commitdiff \| tree
2016-01-07	Mark Abraham	Backport md-vv fixes	commit \| commitdiff \| tree
2016-01-06	Mark Abraham	Fix spurious gcc warning	commit \| commitdiff \| tree
2015-12-29	Berk Hess	Correct vector check of gmx check	commit \| commitdiff \| tree
2015-12-29	Teemu Murtola	Packaging build script for web site	commit \| commitdiff \| tree
2015-12-28	Mark Abraham	Merge branch release-5-1	commit \| commitdiff \| tree
2015-12-27	Mark Abraham	Fix some OpenCL issues	commit \| commitdiff \| tree
2015-12-27	Berk Hess	Reorganized domdec initialization	commit \| commitdiff \| tree
2015-12-24	Mark Abraham	Shell code cleanup	commit \| commitdiff \| tree
2015-12-24	Erik Lindahl	IBM Power6 VMX extended SIMD	commit \| commitdiff \| tree
2015-12-17	Mark Abraham	Simplified energy-summation code	commit \| commitdiff \| tree
2015-12-16	Berk Hess	Add one element to state rvec arrays	commit \| commitdiff \| tree
2015-12-15	Erik Lindahl	C++ math function cleanup	commit \| commitdiff \| tree
2015-12-15	Teemu Murtola	Move main., splitter., gmx_omp_nthreads.* to mdlib	commit \| commitdiff \| tree
2015-12-15	Teemu Murtola	Move readinp.* and warninp.* to fileio/	commit \| commitdiff \| tree
2015-12-15	Teemu Murtola	Move hardware detection to hardware/	commit \| commitdiff \| tree
2015-12-15	Teemu Murtola	Move some mdrun code out of gmxlib/	commit \| commitdiff \| tree
2015-12-12	Teemu Murtola	Move disre.* and orires.* to listed-forces/	commit \| commitdiff \| tree
2015-12-12	Teemu Murtola	Move put_atoms_in_box_omp() to sim_util.*	commit \| commitdiff \| tree
2015-12-12	Teemu Murtola	Remove topology -> fileio dependency	commit \| commitdiff \| tree
2015-12-10	Mark Abraham	Merge branch 'origin/release-5-1'	commit \| commitdiff \| tree
2015-12-08	Mark Abraham	Merge branch 'release-5-0' into release-5-1	commit \| commitdiff \| tree
2015-12-08	Mark Abraham	Fix Trotter integration	commit \| commitdiff \| tree
2015-12-03	Mark Abraham	Remove mdrun -compact	commit \| commitdiff \| tree
2015-12-03	Teemu Murtola	Move strdb.* to utility/	commit \| commitdiff \| tree
2015-12-02	Berk Hess	Made t_inputrec const in PME load balancing	commit \| commitdiff \| tree
2015-12-02	Mark Abraham	Remove twin-range scheme	commit \| commitdiff \| tree
2015-11-30	Mark Abraham	Refactor hardware information management	commit \| commitdiff \| tree
2015-11-25	Elton Carvalho	Rotate Figure 8.2 in manual.	commit \| commitdiff \| tree
2015-11-24	Mark Abraham	Fix error in multi-sim communication	commit \| commitdiff \| tree
2015-11-23	Mark Abraham	Update and expand pre-submit commit matrix	commit \| commitdiff \| tree
2015-11-16	Mark Abraham	Remove t_adress	commit \| commitdiff \| tree
2015-11-16	Mark Abraham	Removed state_global from mdrun energy-summation	commit \| commitdiff \| tree
2015-11-16	Mark Abraham	Merge branch release-5-1	commit \| commitdiff \| tree
2015-11-15	Mark Abraham	Remove AdResS	commit \| commitdiff \| tree
2015-11-11	Mark Abraham	Merge release-5-0 into release-5-1	commit \| commitdiff \| tree
2015-11-10	Mark Abraham	Bump patch version to prepare for 5.1.2	commit \| commitdiff \| tree
2015-11-04	Mark Abraham	Merge branch release-5-1	commit \| commitdiff \| tree
2015-11-04	Mark Abraham	Even less moving from unique_ptr	commit \| commitdiff \| tree
2015-11-04	Mark Abraham	Version 5.1.1	commit \| commitdiff \| tree
2015-10-28	Mark Abraham	Suppress warnings when we have OpenCL 2.0 support	commit \| commitdiff \| tree
2015-10-15	Szilárd Páll	Add CUDA nvcc >=7.0 support	commit \| commitdiff \| tree
2015-10-14	Mark Abraham	Merge release-5-0 into release-5-1	commit \| commitdiff \| tree
2015-10-14	Mark Abraham	Version bumps after release	commit \| commitdiff \| tree
2015-10-14	Mark Abraham	Simplify genconf	commit \| commitdiff \| tree
2015-10-14	Mark Abraham	Version 5.0.7	commit \| commitdiff \| tree
2015-10-13	Mark Abraham	Merge branch release-4-6 into release-5-0	commit \| commitdiff \| tree
2015-10-13	Erik Lindahl	Replace GROMACS-specific math functions with C++11...	commit \| commitdiff \| tree
2015-10-07	Mark Abraham	Merge branch release-5-1 into master	commit \| commitdiff \| tree
2015-10-07	Mark Abraham	Fixed FFTW detection status message location	commit \| commitdiff \| tree
2015-10-05	Mark Abraham	Merge release-5-0 into release-5-1	commit \| commitdiff \| tree
2015-10-02	Mark Abraham	Temporarily test on a machine with only two GPUs	commit \| commitdiff \| tree
2015-09-28	Mark Abraham	Eliminate use of typedefs.h in kernel C code	commit \| commitdiff \| tree
2015-09-26	Mark Abraham	Fix reaction-field warning message	commit \| commitdiff \| tree
2015-09-22	Teemu Murtola	Move oenv.* to fileio/	commit \| commitdiff \| tree
2015-09-16	Mark Abraham	Remove GMX_NOCHARGEGROUPS	commit \| commitdiff \| tree
2015-09-16	Szilard Pall	Fix OpenCL build	commit \| commitdiff \| tree
2015-09-15	Mark Abraham	Merge branch release-5-1	commit \| commitdiff \| tree
2015-09-10	David van der Spoel	Moved content from mdrun.h to separate headers.	commit \| commitdiff \| tree
2015-09-08	Teemu Murtola	Reduce coupling between refdata and libxml2	commit \| commitdiff \| tree
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