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Fix erroneous PME GPU "step" namings
2012-01-04
David v
a
n
der Spoel
Intro
d
uced fatal er
r
o
r
in gro
m
pp fo
r
incorrect use
.
.
.
commit
|
commitdiff
|
tree
2011-10-18
Davi
d
van d
e
r
S
poel
Merge "Doxygen
u
pdate
s
for fatale
r
ror mo
d
ule
.
"
commit
|
commitdiff
|
tree
2011-10-18
David van der Sp
o
el
M
e
rge "Misc
.
Doxygen
improvements
.
"
commit
|
commitdiff
|
tree
2011-09-21
David van
d
e
r
S
p
oel
Commented
out part of
th
i
s new progr
a
m that was not
.
.
.
commit
|
commitdiff
|
tree
2011-09-21
Da
v
id van der Spoel
Fixed docu
m
entation iss
u
e d
e
s
c
r
i
b
e
d in redmine
i
ssue
.
.
.
commit
|
commitdiff
|
tree
2011-09-21
David
v
an der Spoel
Fixed documenta
t
i
on issue described in redmine
issue
.
.
.
commit
|
commitdiff
|
tree
2011-09-19
D
avid van de
r
Spo
e
l
Fixed
c
o
mpi
l
ati
o
n i
s
sues
commit
|
commitdiff
|
tree
2011-09-19
Da
v
i
d
v
a
n der Spoel
Resolved gerrit issue https://gerrit
.
gro
m
ac
s
.
org/#
c
hange
,
126
commit
|
commitdiff
|
tree
2011-09-13
David van der Spoel
A
d
ded wa
r
n
ing line
.
commit
|
commitdiff
|
tree
2011-07-20
David v
a
n der
Spo
e
l
Mer
g
e branch 'r
e
l
e
ase-4-5
-
pa
t
c
hes' o
f
git@
g
it
.
gromacs
.
.
.
commit
|
commitdiff
|
tree
2011-07-20
David van der Spoel
Ad
d
e
d in
i
tializat
i
o
n
o
f arrays
after s
r
enew call
.
commit
|
commitdiff
|
tree
2011-07-20
David van der
S
poel
Added initialization of arrays
after s
r
e
n
ew
c
a
l
l
.
commit
|
commitdiff
|
tree
2011-07-02
David van der Spoel
Merge branch '
m
a
s
t
er' of gi
t
@
g
it
.
gromacs
.
or
g
:gromacs
commit
|
commitdiff
|
tree
2011-07-02
D
a
vid van der Spoel
C
o
mpilation fixes in g
m
x
_densi
t
y
.
c and
h
i
s
togr
a
m
.
cpp
commit
|
commitdiff
|
tree
2011-07-01
David van der Sp
o
el
Merge b
r
anch 'r
e
leas
e
-4-5-
p
a
tch
e
s' of gi
t
@
g
it
.
g
r
o
m
acs
.
.
.
commit
|
commitdiff
|
tree
2011-06-10
David van de
r
Spoel
Merge
b
ra
n
ch
'
release-4-5-patches' of g
i
t@g
i
t
.
gromacs
.
.
.
commit
|
commitdiff
|
tree
2011-06-10
David van
der S
p
oe
l
Added g_dos
t
arget
.
commit
|
commitdiff
|
tree
2011-05-31
David van der
S
p
o
el
F
urther pa
t
ches to f
l
uc
t
uat
i
on code an
d
density
of
.
.
.
commit
|
commitdiff
|
tree
2011-05-31
D
a
vid van der Sp
o
el
Added comput
a
tion of
A
a
nd U
.
commit
|
commitdiff
|
tree
2011-05-31
David van der Spoel
Updated, made default tolera
n
c
e for
b
isector
m
ore
s
tringent
.
.
.
commit
|
commitdiff
|
tree
2011-05-31
David van der
Spoel
Fixed weight
funct
i
ons an
d
add
e
d -d
u
mp option (hidden
.
.
.
commit
|
commitdiff
|
tree
2011-05-31
David
van der Spoel
Upda
t
ed
.
Fixed computation o
f
freq
u
ency
.
commit
|
commitdiff
|
tree
2011-05-31
Davi
d
van d
e
r Spo
e
l
Updated the eqn for
c
omputi
n
g De
l
ta
.
Now get roughly
.
.
.
commit
|
commitdiff
|
tree
2011-05-31
D
avi
d
van der Spoel
Multiplied the DoS by the timestep (between fram
e
s)
.
commit
|
commitdiff
|
tree
2011-05-31
Da
v
id
v
an der S
p
o
el
Updat
e
d
.
N
o
w computes diffusio
n
from the VACF
.
commit
|
commitdiff
|
tree
2011-05-31
Da
v
id van der Spoel
Fixed x-axis to be
in recipr
o
cal cm
.
commit
|
commitdiff
|
tree
2011-05-31
David van der Spo
e
l
Further upd
a
tes
.
Stil
l
not perfect
.
commit
|
commitdiff
|
tree
2011-05-31
David van
d
er Spoe
l
Added stuff to
compute cP
and
S
.
N
ot complete yet
.
commit
|
commitdiff
|
tree
2011-05-31
David van der
Spoel
Upd
a
ted to compute t
h
e
f
lu
i
dicity
.
Added
r
efs for citation
.
commit
|
commitdiff
|
tree
2011-05-31
David v
a
n der Spoel
U
p
dated
commit
|
commitdiff
|
tree
2011-05-31
David van der Sp
o
el
New
commit
|
commitdiff
|
tree
2011-05-31
David van der Spoel
F
urt
h
er patches
t
o
fluctuati
o
n
c
ode and density of
.
.
.
commit
|
commitdiff
|
tree
2011-05-31
David van d
e
r Sp
o
e
l
Mer
g
e branch
'
m
a
ster'
o
f git@git
.
gromac
s
.
o
rg:gromac
s
commit
|
commitdiff
|
tree
2011-05-31
David van der
S
po
e
l
Adde
d
quote
.
commit
|
commitdiff
|
tree
2011-05-31
David van
der Spoel
Further
p
a
t
ches to fluctu
a
tion
code and density of
.
.
.
commit
|
commitdiff
|
tree
2011-05-31
David van der
S
poel
A
d
de
d
quote
.
commit
|
commitdiff
|
tree
2011-05-31
Davi
d
va
n
der
S
poel
Merge
branch
'
relea
s
e-4
-
5-patches'
o
f git@git
.
gromac
s
.
.
.
commit
|
commitdiff
|
tree
2011-05-23
Da
v
i
d
v
a
n d
e
r Spoel
Merge branch 'release-
4
-5-patches' of git@git
.
grom
a
cs
.
.
.
commit
|
commitdiff
|
tree
2011-05-23
Dav
i
d van der Spoel
Re-impleme
n
t
e
d
the f
l
uctuation analysi
s
, based on E
n
tha
l
py
.
.
.
commit
|
commitdiff
|
tree
2011-05-23
David v
a
n der Spoel
R
e
-i
m
plemented
t
he flu
c
tuation an
a
lysis
,
based on Enthalpy
.
.
.
commit
|
commitdiff
|
tree
2011-05-07
David
v
an der S
p
oel
Added co
m
putation of A
a
nd U
.
commit
|
commitdiff
|
tree
2011-05-06
D
avid van der Spoel
U
p
d
ated, m
a
de default tolerance fo
r
bisecto
r
more s
t
rin
g
ent
.
.
.
commit
|
commitdiff
|
tree
2011-05-06
Da
v
id v
a
n der
Spo
e
l
Fixed weight functions and added -dump option (h
i
d
den
.
.
.
commit
|
commitdiff
|
tree
2011-05-06
D
a
vid va
n
der Spo
e
l
Upda
t
ed
.
Fixed co
m
pu
t
ation of frequency
.
commit
|
commitdiff
|
tree
2011-05-06
David
v
a
n der Spoe
l
Merge
br
a
n
c
h 'release-4-5
-
pat
c
h
e
s'
o
f
g
it@g
i
t
.
grom
a
cs
.
.
.
commit
|
commitdiff
|
tree
2011-05-02
D
a
v
id v
a
n de
r
S
po
e
l
U
pda
t
ed
t
he e
q
n for
c
omputi
n
g
Delta
.
Now get roughl
y
.
.
.
commit
|
commitdiff
|
tree
2011-05-01
David van der Sp
o
el
Mu
l
tiplied
t
he DoS by the
t
imest
e
p (between
f
rames)
.
commit
|
commitdiff
|
tree
2011-04-26
David
van der
S
poel
Updated
.
Now co
m
put
e
s
d
iffusion fro
m
the VACF
.
commit
|
commitdiff
|
tree
2011-04-23
David van der Spoe
l
Fixed x-axis to be in recipro
c
al cm
.
commit
|
commitdiff
|
tree
2011-04-23
David
van der Spoel
Further update
s
.
Still
n
ot perfect
.
commit
|
commitdiff
|
tree
2011-04-22
David v
a
n der S
p
o
e
l
Added stuf
f
to comp
u
te cP and
S
.
N
o
t
c
omplete y
e
t
.
commit
|
commitdiff
|
tree
2011-04-21
Davi
d
van der S
p
oel
U
pdated
t
o compute the fluidicity
.
Added
r
ef
s
for cit
a
tion
.
commit
|
commitdiff
|
tree
2011-04-21
David va
n
der Spoel
Firs
t
version of
a
Density of States analysis tool
.
commit
|
commitdiff
|
tree
2011-04-10
David van der Spoel
Merg
e
branch
'release
-
4-5-
p
at
c
hes' of git
.
gromacs
.
org
.
.
.
commit
|
commitdiff
|
tree
2011-04-10
D
a
vid va
n
d
e
r Spoel
A
dded g_hydorder
.
1 man page
.
commit
|
commitdiff
|
tree
2011-04-06
David v
a
n
der Spoel
Fixed
h
ead
e
r
f
or gm
x
_
c
onect
_
init
commit
|
commitdiff
|
tree
2011-04-06
David v
a
n
der Spoel
Fixe
d
header for gmx_conect_init
commit
|
commitdiff
|
tree
2011-04-04
D
a
vid
van der Spo
e
l
M
erge
branc
h
'
r
elease-4-5-patches' of git@g
i
t
.
gromacs
.
.
.
commit
|
commitdiff
|
tree
2011-04-04
David van der Spo
e
l
Removed s
u
perfluous
f
ile
.
commit
|
commitdiff
|
tree
2011-04-04
David van
de
r
S
p
oel
Made
n
e
w progr
a
ms comp
i
le
with gcc -pedantic
.
commit
|
commitdiff
|
tree
2011-04-04
David van der
Spoel
N
ew
ent
r
y
commit
|
commitdiff
|
tree
2011-04-04
David van d
e
r
S
po
e
l
Add
e
d 1 analy
s
is tool manua
l
.
commit
|
commitdiff
|
tree
2011-04-04
David van der S
p
o
e
l
Me
r
ge bra
n
ch 'rele
a
se-4-5-patc
h
es' into order
p
arm
commit
|
commitdiff
|
tree
2011-04-04
Da
v
id va
n
der Spoel
Latest
f
ixes from Bjorn Ste
e
n Saethre
commit
|
commitdiff
|
tree
2011-03-24
David
van
der
S
poel
Added
B
jo
r
n's
c
o
d
e, implemented run
n
ing averag
e
filtering
.
commit
|
commitdiff
|
tree
2011-03-05
David van der S
p
o
e
l
Merge branch 'r
e
lease-4-5-patches' of git@gi
t
.
gromacs
.
.
.
commit
|
commitdiff
|
tree
2011-03-05
David van de
r
Spo
e
l
F
i
xed S
E
GV in
e
neconv
when using
the -e fl
a
g
.
commit
|
commitdiff
|
tree
2011-01-30
D
a
vid v
a
n der Spoel
Fi
x
ed more PBC
a
nd
index
i
ng stuff
.
commit
|
commitdiff
|
tree
2011-01-30
David van de
r
Spoel
Fix
e
d ty
p
o
.
commit
|
commitdiff
|
tree
2011-01-30
David va
n
de
r
Spoel
Merg
e
branc
h
'release-4-5
-
patches'
i
n
t
o orderparm
commit
|
commitdiff
|
tree
2011-01-29
D
a
vid van der Sp
o
el
Merge branch 'release
-
4-5
-
p
a
tches' of
git@
g
it
.
gromacs
.
.
.
commit
|
commitdiff
|
tree
2011-01-29
David van der
S
poel
A
d
de
d
c
ode in g_
n
m
e
ig to compu
t
e the q
u
a
ntum corrections
.
.
.
commit
|
commitdiff
|
tree
2011-01-26
Davi
d
v
an der
S
poel
Me
r
ge bra
n
ch 'release-4-5-
p
atche
s
' of git@git
.
g
romacs
.
.
.
commit
|
commitdiff
|
tree
2011-01-22
David
van de
r
Sp
o
el
Fixed b
u
g
678
w
hich was due
to cal
l
ing
gmx_
f
atal without
.
.
.
commit
|
commitdiff
|
tree
2011-01-22
David
van der Spo
e
l
Fix
e
d bug 678 whi
c
h was
due to callin
g
gmx_fatal
w
i
thout
.
.
.
commit
|
commitdiff
|
tree
2010-12-26
David va
n
der Spoel
Merge bra
n
ch
'
re
l
ease-4-
5
-patches'
o
f git@git
.
gro
m
acs
.
.
.
commit
|
commitdiff
|
tree
2010-12-25
David van der Spoe
l
Added w
a
rn
i
ng in g_dipole
s
commit
|
commitdiff
|
tree
2010-12-23
D
a
v
id van d
e
r
Spoel
Merge branch '
r
elease-4-5-patch
e
s'
commit
|
commitdiff
|
tree
2010-12-23
David van d
e
r
S
poel
Fixed
bug in statistic
s
which
did not a
l
low f
i
tti
n
g
.
.
.
commit
|
commitdiff
|
tree
2010-12-11
David van der S
p
oel
M
e
rge b
r
anch
'
release-4-5-patches'
commit
|
commitdiff
|
tree
2010-12-11
David
v
an der Spoel
Merge branch 'rele
a
se-4-5-patches' of git
.
gromac
s
.
org
.
.
.
commit
|
commitdiff
|
tree
2010-12-11
Davi
d
van der Spo
e
l
M
erge bra
n
c
h
'
m
a
st
e
r'
of git
.
gromac
s
.
o
r
g:gromacs
commit
|
commitdiff
|
tree
2010-12-11
David van
d
e
r
Spoel
Merge br
a
nch 'release-
4
-
5
-pat
c
hes'
commit
|
commitdiff
|
tree
2010-12-11
Davi
d
van der
S
poel
Added 1 quote
.
commit
|
commitdiff
|
tree
2010-12-09
David van der
Spoel
Merge b
r
anch '
r
elease-4-
5
-p
a
tches
'
commit
|
commitdiff
|
tree
2010-12-09
Davi
d
van der Spoel
Added fatal error for when people use energ
y
files
.
.
.
commit
|
commitdiff
|
tree
2010-11-28
David va
n
d
er
Spoel
Merge branch '
r
e
l
ease-4-5-patches'
commit
|
commitdiff
|
tree
2010-11-28
Davi
d
van der Sp
o
el
Fix
e
d bugzilla 616 about formatting
i
n
t
he
hel
p
text
.
commit
|
commitdiff
|
tree
2010-11-26
D
avid
van der Spoe
l
Fixed
S
E
G
V bug in g_sha
m
.
commit
|
commitdiff
|
tree
2010-11-18
David van der Spoel
Made pri
n
ti
n
g in check_multi_ini
t
condi
t
ional,
depen
d
ing
.
.
.
commit
|
commitdiff
|
tree
2010-11-05
David
van der Spoel
F
ixed compil
a
tion issue
.
commit
|
commitdiff
|
tree
2010-11-05
D
a
vid van der Spoel
Fixed compilation is
s
ue
.
commit
|
commitdiff
|
tree
2010-11-05
David van der
Spoel
A
dded flag to gmx_s
t
ats_get_point
commit
|
commitdiff
|
tree
2010-11-02
Dav
i
d van der Spoel
Fi
x
ed bug 608 by
t
hrowi
n
g a fatal error in g
r
om
p
p
.
commit
|
commitdiff
|
tree
2010-10-28
D
a
vid van der S
p
oe
l
Merge branch 're
l
e
ase-4-5-p
a
tches' of git
.
gro
m
acs
.
o
r
g
.
.
.
commit
|
commitdiff
|
tree
2010-10-28
David van de
r
Spoel
F
i
xed bu
g
604
as requeste
d
.
commit
|
commitdiff
|
tree
2010-10-08
David
v
an der Spoel
Me
r
ge bran
c
h 'relea
s
e-4-5-patches' o
f
g
it
.
gromacs
.
org
.
.
.
commit
|
commitdiff
|
tree
2010-10-07
Davi
d
van der Spoel
Fixe
d
compil
a
tio
n
issues
w
ith
C
99 compatibilit
y
.
commit
|
commitdiff
|
tree
2010-10-07
Davi
d
van der Sp
o
el
Fixes and small
a
d
dition
s
t
o
g_wham, due to Jochen
.
.
.
commit
|
commitdiff
|
tree
2010-09-28
David van der Spoel
Re-ad
d
ed g_ki
n
etics
t
o
src/tools/M
a
kefile
.
am
commit
|
commitdiff
|
tree
next