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Fix flat-bottomed position restraints with multiple ranks
2017-08-25
Mark
A
braham
Fix flat-bottomed position r
e
s
t
raints
with
multiple
.
.
.
commit
|
commitdiff
|
tree
2017-08-15
Mark
A
braham
Fix value of Ew
a
l
d
shift
commit
|
commitdiff
|
tree
2017-06-12
Berk H
e
ss
Disable PME tuning with the group scheme
commit
|
commitdiff
|
tree
2017-01-22
Mark Abr
a
ham
F
i
xed gmx rmsf -q -oq
.
commit
|
commitdiff
|
tree
2016-11-16
Carsten Kutzner
Increas
e
d the
d
efault
reset
s
tep to 1500 i
n
gmx tune_pme
commit
|
commitdiff
|
tree
2016-10-06
C
a
r
lo Camilloni
Always update m
d
a
t
oms when doin
g
ene
r
g
y
minimisat
i
on
commit
|
commitdiff
|
tree
2016-09-08
Mark Abr
a
ham
Bumped pa
t
c
h
num
b
er to prepar
e
fo
r
futu
r
e 5
.
1
.
5
release
commit
|
commitdiff
|
tree
2016-09-07
Mark Abraham
V
ers
i
on 5
.
1
.
4
commit
|
commitdiff
|
tree
2016-09-07
Mark A
b
raham
Removed HIS1 from
oplsaa and
c
harmm de
f
in
i
tions
commit
|
commitdiff
|
tree
2016-09-06
M
ark Abraham
Work around glibc 2
.
23 with CUD
A
commit
|
commitdiff
|
tree
2016-09-02
Berk Hess
Fix Parrinello-R
a
hman wi
t
h
nstpcouple>1
commit
|
commitdiff
|
tree
2016-07-29
David van der
Spoel
Fixes in
c
o
rrect
c
harge
s
in
OPLS/AA-L
f
or HISD an
d
HISE
commit
|
commitdiff
|
tree
2016-07-21
Mark Abraham
B
umped patch num
b
er to prep
a
re for
f
uture 5
.
1
.
4
release
commit
|
commitdiff
|
tree
2016-07-13
Mark Abra
h
am
Version 5
.
1
.
3
commit
|
commitdiff
|
tree
2016-07-11
Michael Shirts
Fix f
o
r incorrect
l
y setti
n
g exp
a
n
d
ed ensembl
e
when
.
.
.
commit
|
commitdiff
|
tree
2016-07-08
David
v
an der Spoel
I
ntroduce
fatal error for too
f
ew fra
m
es i
n
g
mx dos
.
commit
|
commitdiff
|
tree
2016-06-28
Berk
H
ess
Properl
y
r
e
set
C
UDA
applicat
i
on clocks
commit
|
commitdiff
|
tree
2016-06-27
Berk H
e
ss
Use sy
s
c
o
nf(_SC_NPROCESSORS_ONLN)
commit
|
commitdiff
|
tree
2016-06-23
Mark
A
braham
P
revent use
of mdrun -maxh -multi
commit
|
commitdiff
|
tree
2016-06-17
Mark Abraham
Fix multi-sim + DD +
s
i
m
p
le distance rest
r
a
i
nts
commit
|
commitdiff
|
tree
2016-06-02
Mark Abrah
a
m
Make
m
ore
CMake variables advanced
commit
|
commitdiff
|
tree
2016-06-02
Mark Abraham
Ignore s
t
derr when dete
c
ting S
I
MD
and build in
f
o
commit
|
commitdiff
|
tree
2016-05-27
Mar
k
A
brah
a
m
Fix reading of b
o
nded tables
commit
|
commitdiff
|
tree
2016-05-10
Mark Abraham
M
inor update to sphi
n
x
dep
e
ndency
commit
|
commitdiff
|
tree
2016-04-19
Mark
Abraham
Fix mdp la
b
el genera
t
i
o
n
commit
|
commitdiff
|
tree
2016-04-14
Carste
n
Kutzner
Corrected
v
a
l
ue of elect
r
ic convers
i
on f
a
ctor f in
.
.
.
commit
|
commitdiff
|
tree
2016-04-04
Erik Lindah
l
Fix
c
o
m
pil
e
erro
r
f
or IBM V
M
X o
n
ppc64
commit
|
commitdiff
|
tree
2016-04-04
Eri
k
Lin
d
ahl
F
i
x
S
I
MD d
e
tectio
n
on new AMD AVX
CPUs w/o fma
commit
|
commitdiff
|
tree
2016-03-31
James W
.
Barnett
Rev
e
rt behavi
o
r
f
o
r
handling
S
ETTLE
e
rro
r
s
commit
|
commitdiff
|
tree
2016-03-30
Berk
H
ess
Correct
m
d
run tMP
I
(non-)parallel error m
e
ssage
commit
|
commitdiff
|
tree
2016-03-18
Mark Abraham
Warn about OpenMPI 1
.
8
.
6
commit
|
commitdiff
|
tree
2016-03-18
Berk H
e
ss
Fix non-no
r
malization of
FFT auto
c
orr
commit
|
commitdiff
|
tree
2016-03-18
M
a
r
k Ab
r
aham
Fi
x
typo i
n
Fou
r
ier dihed
r
al
e
quation
commit
|
commitdiff
|
tree
2016-03-15
Mark A
b
raham
M
e
r
g
e
b
ranch
r
e
lease-5
-
0 into release
-
5-1
commit
|
commitdiff
|
tree
2016-03-11
M
a
rk Abraham
Mer
g
e b
r
anch r
e
lease-5-0 into rele
a
se-5-1
commit
|
commitdiff
|
tree
2016-02-16
Mark
Abraham
Merge branch release-5-0 into relea
s
e-5-1
commit
|
commitdiff
|
tree
2016-02-14
Mark Abraham
Re-gen
e
rated
e
p
s
for fi
g
ure 4
.
8
commit
|
commitdiff
|
tree
2016-02-08
Mark Abraham
M
e
rge bra
n
c
h
rel
e
ase-5-0 into release-5
-
1
commit
|
commitdiff
|
tree
2016-02-03
Mark Abra
h
am
Bumped patch
n
u
mber t
o
prepare
f
or f
u
t
u
r
e
5
.
1
.
3
r
e
lea
s
e
commit
|
commitdiff
|
tree
2016-02-03
Mark Abraham
Versi
o
n 5
.
1
.
2
commit
|
commitdiff
|
tree
2016-02-03
Mar
k
Abraham
M
e
rge rele
a
se-5-0
i
nto re
l
ease-5-1
commit
|
commitdiff
|
tree
2016-01-26
Mark
A
brah
a
m
Fix defau
l
t fo
r
GMX_USE_N
V
ML
commit
|
commitdiff
|
tree
2016-01-12
Mark Abraham
Merge branch release
-
5-
0
i
nto release-5
-
1
commit
|
commitdiff
|
tree
2016-01-07
Mark
A
braham
Avoi
d
m
ore C++ bindings for MPI
commit
|
commitdiff
|
tree
2016-01-07
M
ark Abr
a
h
am
Sto
p
using U
N
DEFI
N
ED as name of a s
y
mbol
commit
|
commitdiff
|
tree
2016-01-07
Mar
k
Abraham
Ba
c
kport md-vv
f
ix
e
s
commit
|
commitdiff
|
tree
2015-12-29
B
erk Hess
C
orrect vector check
o
f
gmx check
commit
|
commitdiff
|
tree
2015-12-27
Mark Abr
a
ham
Fix some OpenCL issues
commit
|
commitdiff
|
tree
2015-12-08
Mark Abra
h
am
Merge branch '
r
elease-5-0' i
n
to release-
5
-1
commit
|
commitdiff
|
tree
2015-12-08
Mark
Abraham
Fix Tro
t
ter integration
commit
|
commitdiff
|
tree
2015-11-25
E
l
ton Carvalho
R
o
tate Figure
8
.
2 in
man
u
al
.
commit
|
commitdiff
|
tree
2015-11-24
Mar
k
Abrah
a
m
Fix
error in multi-
s
im commu
n
icat
i
on
commit
|
commitdiff
|
tree
2015-11-11
Mark Abraham
Merge release-5-
0
into
r
elease-
5
-
1
commit
|
commitdiff
|
tree
2015-11-10
M
a
rk Abraham
B
u
mp pa
t
ch version to prepare for 5
.
1
.
2
commit
|
commitdiff
|
tree
2015-11-04
Mark
Ab
r
aham
Version
5
.
1
.
1
commit
|
commitdiff
|
tree
2015-10-28
Mark Abr
a
ham
Su
p
press warnings when we
have OpenCL 2
.
0 s
u
p
p
ort
commit
|
commitdiff
|
tree
2015-10-15
Szilárd
Páll
Add CUDA nvcc >=7
.
0 support
commit
|
commitdiff
|
tree
2015-10-14
Mark Abraham
Mer
g
e
r
elease-5-0 into releas
e
-5-1
commit
|
commitdiff
|
tree
2015-10-14
Mark Abraham
Version
b
umps after r
e
l
e
ase
commit
|
commitdiff
|
tree
2015-10-14
M
a
r
k
Abraham
Vers
i
on 5
.
0
.
7
commit
|
commitdiff
|
tree
2015-10-13
Ma
r
k Abrah
a
m
Merge branch
rele
a
se-4-6 into release-5-0
commit
|
commitdiff
|
tree
2015-10-07
Mark A
b
rah
a
m
F
ixed F
F
T
W
d
e
tection st
a
tus message lo
c
ation
commit
|
commitdiff
|
tree
2015-10-05
Mar
k
A
braham
Merge releas
e
-5-0
i
nt
o
release-5-1
commit
|
commitdiff
|
tree
2015-09-26
Ma
r
k Abraham
Fix r
e
acti
o
n-field warnin
g
me
s
sage
commit
|
commitdiff
|
tree
2015-09-16
Szilard
Pall
Fix OpenCL build
commit
|
commitdiff
|
tree
2015-08-19
M
a
rk A
b
raham
Har
d
en FindS
p
h
i
nx
.
cmake
commit
|
commitdiff
|
tree
2015-08-14
Mark Abraham
B
u
mp pat
c
h
v
e
r
sion to
p
repare f
o
r
5
.
1
.
1
commit
|
commitdiff
|
tree
2015-08-14
Mark Abr
a
h
a
m
Version 5
.
1
commit
|
commitdiff
|
tree
2015-08-14
Berk
Hess
Make mdrun
-nt
work ag
a
in
commit
|
commitdiff
|
tree
2015-08-13
Mark A
b
raham
Make it ea
s
ier t
o
find selecti
o
n hel
p
commit
|
commitdiff
|
tree
2015-08-12
Mark Abra
h
am
Add documentation for en
e
r
gygrps with GPUs
commit
|
commitdiff
|
tree
2015-08-11
Mark A
b
rah
a
m
Ab
o
rt if PME tunin
g
is a
c
tive and counters
r
eset
commit
|
commitdiff
|
tree
2015-08-08
Mark
Abraham
M
e
r
g
e branch release-5-0 into release-5-1
commit
|
commitdiff
|
tree
2015-08-08
Mark Abraham
Fix docs of ftypes of
d
ihedrals
commit
|
commitdiff
|
tree
2015-08-04
Mark Abraham
Merge relea
s
e-5-
0
into release-
5
-1
commit
|
commitdiff
|
tree
2015-08-03
Mark
Abraham
Fix
possible
l
inking of libxml2 t
o
zli
b
commit
|
commitdiff
|
tree
2015-07-26
Mark Abraha
m
M
erge branch release-5-0 into release-5-1
commit
|
commitdiff
|
tree
2015-07-26
Mark Abra
h
a
m
Version bumps a
f
ter new release
commit
|
commitdiff
|
tree
2015-07-24
Mark Abraham
Versi
o
n 5
.
0
.
6
commit
|
commitdiff
|
tree
2015-07-06
M
a
rk
Abraham
First 5
.
1 rele
a
s
e
candidate
commit
|
commitdiff
|
tree
2015-07-06
B
erk Hess
Fix too small GPU pai
r
count estimates
commit
|
commitdiff
|
tree
2015-07-06
Berk Hess
Fix bu
g
in GPU list bal
a
ncing
commit
|
commitdiff
|
tree
2015-06-29
Mark
A
b
r
aham
Merge
b
ranch release-5-0
commit
|
commitdiff
|
tree
2015-06-29
Mark
A
b
r
a
ham
D
o
cu
m
ented buil
d
types in dev
e
loper guide
commit
|
commitdiff
|
tree
2015-06-29
Mark Abra
h
am
Me
r
ge
relea
s
e-4-6 into relea
s
e-5-0
commit
|
commitdiff
|
tree
2015-06-29
Mark
Abraham
F
i
x al
l
use of
n
bn
x
n_sim
d
.
h
commit
|
commitdiff
|
tree
2015-06-27
Be
r
k Hess
Improve
p
air search
t
h
read load b
a
l
a
nce
commit
|
commitdiff
|
tree
2015-06-27
Mark Abraha
m
M
e
rge rele
a
s
e
-5-0 into ma
s
ter
commit
|
commitdiff
|
tree
2015-06-26
Mark Abrah
a
m
M
e
r
g
e rele
a
se-4-
6
i
n
t
o
release-5-0
commit
|
commitdiff
|
tree
2015-06-25
Erik Lindahl
F
ix edr a
p
pe
n
ding and exact c
o
ntinuation
commit
|
commitdiff
|
tree
2015-06-25
E
r
ik Li
n
dahl
Fix bin
a
ry
e
xact
c
ontinuation for traject
o
rie
s
commit
|
commitdiff
|
tree
2015-06-25
Mark
A
braham
Merge release
-
5
-
0 into master
commit
|
commitdiff
|
tree
2015-06-24
Mark Abra
h
am
Merge release-4-6 into
r
elease-5-0
commit
|
commitdiff
|
tree
2015-06-15
Rossen Apost
o
lo
v
B
u
il
d
i
ng
o
wn fftw now uses version 3
.
3
.
4
commit
|
commitdiff
|
tree
2015-06-12
M
ark
Abraham
Fix commandline te
s
t
data
commit
|
commitdiff
|
tree
2015-06-09
Mark Abrah
a
m
Merge branch release-4-6 into release-5-0
commit
|
commitdiff
|
tree
2015-06-09
Teem
u
Murt
o
la
Reso
l
ve one TODO for command line help t
e
sts
commit
|
commitdiff
|
tree
2015-05-28
T
e
e
mu M
u
rtola
Improve lists in user
g
uide f
o
r selections
commit
|
commitdiff
|
tree
2015-05-26
Mark Abraham
C
o
nvert ewald module to C++
commit
|
commitdiff
|
tree
2015-05-26
M
a
rk
A
b
r
a
ham
Fi
x
use of h
a
rd-co
d
ed tem
p
orary filename
commit
|
commitdiff
|
tree
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