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2014-09-24	Jens Glaser	Fix bond_coeff syntax in example script	commit \| commitdiff \| tree
2014-08-30	Jens Glaser	Fix potential problem in Messenger related to MPI window	commit \| commitdiff \| tree
2014-08-25	Jens Glaser	Fix uninitialized value in CachedAllocator	commit \| commitdiff \| tree
2014-07-25	Jens Glaser	Updated ModernGPU	commit \| commitdiff \| tree
2014-07-23	Jens Glaser	Forgot to set autotuner options	commit \| commitdiff \| tree
2014-07-23	Jens Glaser	Restricted ComputeThermo workaround to non-MTK NVT	commit \| commitdiff \| tree
2014-07-23	Jens Glaser	Added autotuners to NVT MTK	commit \| commitdiff \| tree
2014-07-05	Jens Glaser	Minor strong scaling optimization in NVT MTK	commit \| commitdiff \| tree
2014-07-05	Jens Glaser	Merge branch 'maint' into nvt_mtk	commit \| commitdiff \| tree
2014-07-05	Jens Glaser	Add installation directory to search paths for hoomd lib	commit \| commitdiff \| tree
2014-07-05	Jens Glaser	Fix bug in MPI error message output	commit \| commitdiff \| tree
2014-07-03	Jens Glaser	Added NVT MTK unit tests	commit \| commitdiff \| tree
2014-07-03	Jens Glaser	Added IntegratorTwoStepNVTMTK (Martyna-Tobias-Klein...	commit \| commitdiff \| tree
2014-07-01	Jens Glaser	Fixing typo	commit \| commitdiff \| tree
2014-07-01	Jens Glaser	align_fix	commit \| commitdiff \| tree
2014-04-25	Jens Glaser	Added MPI_SUPPORTED to dihedral.table and angle.table	commit \| commitdiff \| tree
2014-04-25	Jens Glaser	Fixed section heading	commit \| commitdiff \| tree
2014-04-25	Jens Glaser	Added hint about cuda-aware MPI in compile instructions	commit \| commitdiff \| tree
2014-04-25	Jens Glaser	Re-enable deletion of bonds	commit \| commitdiff \| tree
2014-04-24	Jens Glaser	Oops, fixed a mistake in my last changes	commit \| commitdiff \| tree
2014-04-24	Jens Glaser	Fixed memory leak	commit \| commitdiff \| tree
2014-04-24	Jens Glaser	Added unit tests for tabulated angle potential	commit \| commitdiff \| tree
2014-04-23	Jens Glaser	NPT: Automatically remove a degree of freedom that...	commit \| commitdiff \| tree
2014-04-23	Jens Glaser	Added option to integrate.npt() to rescale all particles	commit \| commitdiff \| tree
2014-04-23	Jens Glaser	Merge branch 'master' of https://codeblue.umich.edu...	commit \| commitdiff \| tree
2014-04-23	Jens Glaser	Fixed dihedral table potential forces	commit \| commitdiff \| tree
2014-04-23	Jens Glaser	Merge branch 'master' of https://codeblue.umich.edu...	commit \| commitdiff \| tree
2014-04-23	Jens Glaser	fixed precision issue	commit \| commitdiff \| tree
2014-04-23	Jens Glaser	Fixed bug with triclinic+MPI: cell list was not correctly...	commit \| commitdiff \| tree
2014-04-22	Jens Glaser	Added explanation on GPU affinity to MPI documentation	commit \| commitdiff \| tree
2014-04-22	Jens Glaser	Adapted plugins to double precision / Scalar	commit \| commitdiff \| tree
2014-04-22	Jens Glaser	updated a few commands to MPI_SUPPORTED	commit \| commitdiff \| tree
2014-04-22	Jens Glaser	Fix compiler warning	commit \| commitdiff \| tree
2014-04-22	Jens Glaser	Use mapped buffer for particle migration in GPU communication	commit \| commitdiff \| tree
2014-04-22	Jens Glaser	Added unit testing of triclinic boxes for communication	commit \| commitdiff \| tree
2014-04-21	Jens Glaser	Fixed compiler warning	commit \| commitdiff \| tree
2014-04-20	Jens Glaser	Reinstate tolerance	commit \| commitdiff \| tree
2014-04-20	Jens Glaser	Fixed bug: triclinic not working correctly with MPI	commit \| commitdiff \| tree
2014-04-20	Jens Glaser	Fix compiler warning	commit \| commitdiff \| tree
2014-04-20	Jens Glaser	More user-friendly error message when simulation box...	commit \| commitdiff \| tree
2014-04-14	Jens Glaser	Linked replicate documentation to command index	commit \| commitdiff \| tree
2014-04-14	Jens Glaser	Extended unit test which should have caught the exclusions bug	commit \| commitdiff \| tree
2014-04-14	Jens Glaser	Only update ghosts when necessary (when overlapping...	commit \| commitdiff \| tree
2014-04-14	Jens Glaser	Added missing synchronization statements for MPI_CUDA	commit \| commitdiff \| tree
2014-04-14	Jens Glaser	Fix bug: nlist.reset_exclusions() with empty arguments...	commit \| commitdiff \| tree
2014-04-03	Jens Glaser	No longer initialize with particles out of the box	commit \| commitdiff \| tree
2014-04-02	Jens Glaser	Fixed bug (pair force equals zero for external potential...	commit \| commitdiff \| tree
2014-04-01	Jens Glaser	Merge branch 'fix_sync'	commit \| commitdiff \| tree
2014-03-31	Jens Glaser	Enabled some unit tests for MPI	commit \| commitdiff \| tree
2014-03-31	Jens Glaser	Merge branch 'master' of https://codeblue.umich.edu...	commit \| commitdiff \| tree
2014-03-31	Jens Glaser	Fixed bug in MPI simulations: ghost fields not communicated...	commit \| commitdiff \| tree
2014-03-31	Jens Glaser	Fixed bug in bond force creation for bond.fene in MPI	commit \| commitdiff \| tree
2014-03-27	Jens Glaser	Added necessary synchronizations for ENABLE_MPI_CUDA	commit \| commitdiff \| tree
2014-03-27	Jens Glaser	the previous bugfix introduced a different bug	commit \| commitdiff \| tree
2014-03-27	Jens Glaser	Fixed warning in unit test	commit \| commitdiff \| tree
2014-03-27	Jens Glaser	Removed unnecessary statements	commit \| commitdiff \| tree
2014-03-27	Jens Glaser	Added replicate() unit test	commit \| commitdiff \| tree
2014-03-27	Jens Glaser	Fixed replicate python command	commit \| commitdiff \| tree
2014-03-27	Jens Glaser	Fixed MPI communication of tags on CPU	commit \| commitdiff \| tree
2014-03-26	Jens Glaser	Merge branch 'master' into replicate	commit \| commitdiff \| tree
2014-03-26	Jens Glaser	Forgot to remove file in unit test	commit \| commitdiff \| tree
2014-03-26	Jens Glaser	Added unit tests for new boxdim features	commit \| commitdiff \| tree
2014-03-26	Jens Glaser	Merge branch 'master' into extend_boxdim	commit \| commitdiff \| tree
2014-03-21	Jens Glaser	Merge branch 'out_of_box_xml' into extend_boxdim	commit \| commitdiff \| tree
2014-03-21	Jens Glaser	Correctly re-initialize exclusions after replicate()	commit \| commitdiff \| tree
2014-03-21	Jens Glaser	Documented limitations of replicate()	commit \| commitdiff \| tree
2014-03-21	Jens Glaser	Merge branch 'master' into replicate	commit \| commitdiff \| tree
2014-03-21	Jens Glaser	Added extra safety for data structure consistency	commit \| commitdiff \| tree
2014-03-21	Jens Glaser	Merge branch 'replicate' of https://codeblue.umich...	commit \| commitdiff \| tree
2014-03-21	Jens Glaser	Made sure that replicate() command works with exclusions set	commit \| commitdiff \| tree
2014-03-20	Jens Glaser	Extended data.boxdim: Enable wrapping of coordinates...	commit \| commitdiff \| tree
2014-03-20	Jens Glaser	Enabled optional reading of XML files with positions...	commit \| commitdiff \| tree
2014-03-16	Jens Glaser	Force rebuild of cell list when box has changed	commit \| commitdiff \| tree
2014-03-05	Jens Glaser	Merge branch 'master' of https://codeblue.umich.edu...	commit \| commitdiff \| tree
2014-03-05	Jens Glaser	Really fixed performance regression	commit \| commitdiff \| tree
2014-02-28	Jens Glaser	Removed automatic enabling of GPUDirect RDMA for MVAPICH2	commit \| commitdiff \| tree
2014-02-28	Jens Glaser	Fixed bug in replication of molcules	commit \| commitdiff \| tree
2014-02-27	Jens Glaser	Print notice message when group.all() is updated	commit \| commitdiff \| tree
2014-02-27	Jens Glaser	Added replicate() command to system_data	commit \| commitdiff \| tree
2014-02-27	Jens Glaser	Removed unnecessary statement in DPD GPU class	commit \| commitdiff \| tree
2014-02-27	Jens Glaser	Omitted unnecessary duplicate statement in DPD pair...	commit \| commitdiff \| tree
2014-02-26	Jens Glaser	Fix XML output of impropers and dihedrals	commit \| commitdiff \| tree
2014-02-24	Jens Glaser	Fix crash in CPU MPI simulations	commit \| commitdiff \| tree
2014-02-23	Jens Glaser	Added autotuning of overlapping communication option	commit \| commitdiff \| tree
2014-02-22	Jens Glaser	Enable setting of communication autotuner params via...	commit \| commitdiff \| tree
2014-02-22	Jens Glaser	Enabled autotuning of mapped-memory usage for ghost...	commit \| commitdiff \| tree
2014-02-21	Jens Glaser	Enable auto-tuning of DPD pair force kernel	commit \| commitdiff \| tree
2014-02-21	Jens Glaser	Fix DPD in multi-GPU simulations	commit \| commitdiff \| tree
2014-02-16	Jens Glaser	Really fix tune.r_buff() now	commit \| commitdiff \| tree
2014-02-16	Jens Glaser	Removed unnecessary statement	commit \| commitdiff \| tree
2014-02-16	Jens Glaser	Fix autotuner<->tune.r_buff() interop	commit \| commitdiff \| tree
2014-02-16	Jens Glaser	Added tune_kernels option to tune.r_buff	commit \| commitdiff \| tree
2014-02-16	Jens Glaser	Enabled caching of pair force arguments in constant...	commit \| commitdiff \| tree
2014-02-10	Jens Glaser	Added fractional position output when particle is found...	commit \| commitdiff \| tree
2014-02-04	Jens Glaser	Added absolute tolerance in test_nvt_integrator_mpi	commit \| commitdiff \| tree
2014-02-03	Jens Glaser	Merge branch 'master' of https://codeblue.umich.edu...	commit \| commitdiff \| tree
2014-02-03	Jens Glaser	Only pre-compute enabled forces	commit \| commitdiff \| tree
2014-02-02	Jens Glaser	Eliminated unnecessary buffer copy in MPI_CUDA	commit \| commitdiff \| tree
2014-02-02	Jens Glaser	Fixed bug (group communication not working with MPI_CUDA)	commit \| commitdiff \| tree
2014-01-31	Jens Glaser	Merge branch 'refactor_groups'	commit \| commitdiff \| tree
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HOOMD-blue is a general-purpose particle simulation toolkit

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