setup.py

   1 from setuptools import setup#, Extension
   2 from Cython.Build import cythonize, build_ext
   3 from distutils.extension import Extension
   4 # setuptools DWIM monkey-patch madness
   5 # http://mail.python.org/pipermail/distutils-sig/2007-September/thread.html#8204
   6 #import sys
   7 #if 'setuptools.extension' in sys.modules:
   8 #        m = sys.modules['setuptools.extension']
   9 #        m.Extension.__dict__ = m._Extension.__dict__
  10
  11 # TODO CHECK THIS OUT http://stackoverflow.com/questions/4056657/what-is-the-easiest-way-to-make-an-optional-c-extension-for-a-python-package
  12 # AND THIS https://groups.google.com/forum/#!topic/cython-users/GAAPYb2X304
  13 # also this: https://docs.python.org/2/extending/building.html
  14 import os
  15
  16 #print("You might want to add additional library path to LD_LIBRARY_PATH (especially if you are not using"
  17 #        " GNU GSL in your system library path) and if import fails. ")
  18 #if("LD_LIBRARY_PATH" in os.environ):
  19 #    print(os.environ['LD_LIBRARY_PATH'].split(':'))
  20
  21
  22
  23 '''
  24 amos_sources = [
  25         'amos/d1mach.f',
  26         'amos/dgamln.f',
  27         'amos/i1mach.f',
  28         'amos/xerror.f',
  29         'amos/zabs.f',
  30         'amos/zacai.f',
  31         'amos/zacon.f',
  32         'amos/zairy.f',
  33         'amos/zasyi.f',
  34         'amos/zbesh.f',
  35         'amos/zbesi.f',
  36         'amos/zbesj.f',
  37         'amos/zbesk.f',
  38         'amos/zbesy.f',
  39         'amos/zbinu.f',
  40         'amos/zbiry.f',
  41         'amos/zbknu.f',
  42         'amos/zbuni.f',
  43         'amos/zbunk.f',
  44         'amos/zdiv.f',
  45         'amos/zexp.f',
  46         'amos/zkscl.f',
  47         'amos/zlog.f',
  48         'amos/zmlri.f',
  49         'amos/zmlt.f',
  50         'amos/zrati.f',
  51         'amos/zs1s2.f',
  52         'amos/zseri.f',
  53         'amos/zshch.f',
  54         'amos/zsqrt.f',
  55         'amos/zuchk.f',
  56         'amos/zunhj.f',
  57         'amos/zuni1.f',
  58         'amos/zuni2.f',
  59         'amos/zunik.f',
  60         'amos/zunk1.f',
  61         'amos/zunk2.f',
  62         'amos/zuoik.f',
  63         'amos/zwrsk.f',
  64         ]
  65
  66 libqpms_sources = [
  67             #'qpms/hexpoints_c.pyx',
  68             'qpms/gaunt.c',#'qpms/gaunt.h','qpms/vectors.h','qpms/translations.h',
  69             # FIXME http://stackoverflow.com/questions/4259170/python-setup-script-extensions-how-do-you-include-a-h-file
  70             'qpms/translations.c',
  71             'qpms/symmetries.c',
  72             'qpms/wigner.c',
  73             'qpms/scatsystem.c',
  74             'qpms/vswf.c', # FIXME many things from vswf.c are not required by this module, but they have many dependencies (following in this list); maybe I want to move all the  "basespec stuff"
  75             'qpms/legendre.c',
  76             'qpms/tmatrices.c',
  77             'qpms/materials.c',
  78             'qpms/error.c',
  79             'qpms/bessel.c',
  80             'qpms/own_zgemm.c',
  81             'qpms/pointgroups.c',
  82             ]
  83 '''
  84
  85 cycommon = Extension('qpms.cycommon',
  86         sources = ['qpms/cycommon.pyx'],
  87         #extra_link_args=['qpms/libqpms.a'],
  88         libraries=['qpms', 'gsl', 'lapacke', 'blas', 'gslcblas', 'pthread',]
  89         )
  90 cytmatrices = Extension('qpms.cytmatrices',
  91         sources = ['qpms/cytmatrices.pyx'],
  92         #extra_link_args=['qpms/libqpms.a', 'amos/libamos.a'],
  93         libraries=['qpms', 'gsl', 'lapacke', 'blas', 'gslcblas', 'pthread',]
  94         )
  95 cywaves = Extension('qpms.cywaves',
  96         sources = ['qpms/cywaves.pyx'],
  97         libraries=['qpms', 'gsl', 'lapacke', 'blas', 'gslcblas', 'pthread',]
  98         )
  99 cytranslations = Extension('qpms.cytranslations',
 100         sources = ['qpms/cytranslations.pyx',
 101             'qpms/translations_python.c',
 102             ],
 103         extra_compile_args=['-std=c99',
 104             '-DQPMS_COMPILE_PYTHON_EXTENSIONS', # This is needed to enable it in translations.h
 105             ],
 106         #extra_link_args=['qpms/libqpms.a', 'amos/libamos.a'],
 107         libraries=['qpms', 'gsl', 'lapacke', 'blas', 'gslcblas', 'pthread',]
 108         )
 109 cybspec = Extension('qpms.cybspec',
 110         sources = ['qpms/cybspec.pyx'],
 111         #extra_link_args=['qpms/libqpms.a'],
 112         libraries=['qpms', 'gsl', 'lapacke', 'blas', 'gslcblas', 'pthread',]
 113         )
 114 cymaterials = Extension('qpms.cymaterials',
 115         sources = ['qpms/cymaterials.pyx'],
 116         #extra_link_args=['qpms/libqpms.a'],
 117         libraries=['qpms', 'gsl', 'lapacke', 'blas', 'gslcblas', 'pthread',]
 118         )
 119 cyquaternions = Extension('qpms.cyquaternions',
 120         sources = ['qpms/cyquaternions.pyx'],
 121         #extra_link_args=['amos/libamos.a', 'qpms/libqpms.a'],
 122         libraries=['qpms', 'gsl', 'lapacke', 'blas', 'gslcblas', 'pthread',]
 123         )
 124 cyewaldtest = Extension('qpms.cyewaldtest',
 125         sources = ['qpms/cyewaldtest.pyx'],
 126         libraries=['qpms', 'gsl', 'lapacke', 'blas', 'gslcblas', 'pthread',]
 127         )
 128
 129 qpms_c = Extension('qpms.qpms_c',
 130         sources = [
 131             'qpms/qpms_c.pyx',
 132         ],
 133         libraries=['qpms', 'gsl', 'lapacke', 'blas', 'gslcblas', 'pthread', #'omp'
 134             #('amos', dict(sources=amos_sources) ),
 135         ],
 136         include_dirs=['amos', 'qpms'],
 137         extra_link_args=['-fopenmp'],
 138         extra_compile_args=['-fopenmp'],
 139         #extra_link_args=[ 'qpms/libqpms.a','amos/libamos.a', ],
 140         #runtime_library_dirs=os.environ['LD_LIBRARY_PATH'].split(':') if 'LD_LIBRARY_PATH' in os.environ else [],
 141         #extra_objects = ['amos/libamos.a'], # FIXME apparently, I would like to eliminate the need to cmake/make first
 142         )
 143
 144 setup(name='qpms',
 145         version = "0.2.996",
 146         packages=['qpms'],
 147 #        libraries = [('amos', {'sources': amos_sources} )],
 148         setup_requires=['cython>=0.28',],
 149         install_requires=['cython>=0.28',
 150             #'quaternion','spherical_functions',
 151             'scipy>=0.18.0', 'sympy>=1.2'],
 152         #dependency_links=['https://github.com/moble/quaternion/archive/v2.0.tar.gz','https://github.com/moble/spherical_functions/archive/master.zip'],
 153         ext_modules=cythonize([qpms_c, cywaves, cytranslations, cytmatrices, cycommon, cyquaternions, cybspec, cymaterials, cyewaldtest], include_path=['qpms', 'amos'], gdb_debug=True),
 154         cmdclass = {'build_ext': build_ext},
 155         zip_safe=False
 156         )
 157
 158