mason/breeders_toolbox/manage_upload.mas

   1 <%args>
   2 $locations
   3 $geojson_locations
   4 $breeding_programs
   5 $timestamp
   6 $preferred_species => ""
   7 $editable_stock_props => {}
   8 $editable_stock_props_definitions => {}
   9 $facilities => ()
  10 $management_factor_types => ()
  11 $design_types => ()
  12 </%args>
  13
  14 <& /util/import_javascript.mas, classes => [ 'bootstrap_min.js', 'jquery.iframe-post-form','CXGN.List', 'CXGN.BreedersToolbox.AddTrial','CXGN.BreedersToolbox.UploadTrial','CXGN.BreedersToolbox.Trial', 'CXGN.Trial','CXGN.BreedersToolbox.GenotypingTrial','CXGN.BreedersToolbox.Accessions', 'CXGN.BreedersToolbox.UploadPedigrees','CXGN.BreedersToolbox.Crosses','CXGN.BreedersToolbox.FieldBook','CXGN.BreedersToolbox.UploadPhenotype', 'CXGN.BreederSearch', 'CXGN.Trial','CXGN.TrialTreeFolders' ] &>
  15
  16 <& /page/page_title.mas, title=>"Upload Data" &>
  17
  18 <style>
  19 .ui-autocomplete {
  20     z-index: 5000;
  21 }
  22 </style>
  23
  24 <div class="container-fluid">
  25
  26 <div class="well well-sm">
  27 <h1>Traits</h1><br/>
  28 <table class="table table-bordered">
  29 <thead>
  30 <tr><th>Add</th><th>Manage</th><th>Search</th></tr>
  31 </thead>
  32 <tbody>
  33 <tr>
  34 <td>
  35 <a href="http://submit.rtbbase.org"><p>Go To Trait Request Form</p></a>
  36 </td>
  37 <td>
  38 <a href="/tools/onto"><p>Go To Ontology Browser</p></a>
  39 </td>
  40 <td>
  41 <a href="/search/traits"><p>Go To Trait Search</p></a>
  42 </td>
  43 </tr>
  44 </tbody>
  45 </table>
  46 </div>
  47
  48 <div class="well well-sm">
  49 <h1>Field Trials</h1><br/>
  50 <table class="table table-bordered">
  51 <thead>
  52 <tr><th>Add</th><th>Manage</th><th>Search</th></tr>
  53 </thead>
  54 <tbody>
  55 <tr>
  56 <td>
  57 <a name="upload_trial_link"><p>Upload An Existing Trial</p></a>
  58 <a id="add_project_link"><p>Design A New Trial</p></a>
  59 </td>
  60 <td>
  61 <a href="/breeders/trials"><p>Go To Manage Trials</p></a>
  62 </td>
  63 <td>
  64 <a href="/search/trials"><p>Go To Trial Search</p></a>
  65 </td>
  66 </tr>
  67 </tbody>
  68 </table>
  69 </div>
  70 <& /breeders_toolbox/trial/trial_create_dialogs.mas, locations => $geojson_locations, breeding_programs => $breeding_programs, management_factor_types => $management_factor_types, design_types => $design_types &>
  71 <& /breeders_toolbox/trial/trial_upload_dialogs.mas, locations => $geojson_locations, breeding_programs => $breeding_programs, design_types => $design_types &>
  72
  73 <div class="well well-sm">
  74 <h1>Genotyping Plates</h1><br/>
  75 <table class="table table-bordered">
  76 <thead>
  77 <tr><th>Add</th><th>Manage</th><th>Search</th></tr>
  78 </thead>
  79 <tbody>
  80 <tr>
  81 <td>
  82 <a name="create_genotyping_trial_link"><p>Create An IGD Genotyping Plate</p></a>
  83 </td>
  84 <td>
  85 <a href="/breeders/genotyping"><p>Go To Manage Genotyping Plates</p></a>
  86 </td>
  87 <td>
  88 <a href="/search/trials"><p>Go To Trial Search</p></a>
  89 </td>
  90 </tr>
  91 </tbody>
  92 </table>
  93 </div>
  94 <& /breeders_toolbox/genotyping_trials/create_genotyping_trial_dialogs.mas, facilities => $facilities &>
  95
  96 <div class="well well-sm">
  97 <h1>Locations</h1><br/>
  98 <table class="table table-bordered">
  99 <thead>
 100 <tr><th>Add</th><th>Manage</th><th>Search</th></tr>
 101 </thead>
 102 <tbody>
 103 <tr>
 104 <td>
 105 <a id="upload_locations_link"><p>Upload Many New Locations</p></a>
 106 </td>
 107 <td>
 108 <a href="/breeders/locations"><p>Go To Manage Locations</p></a>
 109 </td>
 110 <td>
 111 <a href="/breeders/locations"><p>Go To Manage Locations</p></a>
 112 </td>
 113 </tr>
 114 </tbody>
 115 </table>
 116 </div>
 117 <& /breeders_toolbox/upload_locations_dialogs.mas &>
 118
 119 <div class="well well-sm">
 120 <h1>Accessions</h1><br/>
 121 <table class="table table-bordered">
 122 <thead>
 123 <tr><th>Add</th><th>Manage</th><th>Search</th></tr>
 124 </thead>
 125 <tbody>
 126 <tr>
 127 <td>
 128 <a name="add_accessions_link"><p>Add Accessions Using List</p></a>
 129 </td>
 130 <td>
 131 <a href="/breeders/accessions"><p>Go To Manage Accessions Page</p></a>
 132 </td>
 133 <td>
 134 <a href="/search/stocks"><p>Go To Accessions Search</p></a>
 135 </td>
 136 </tr>
 137 </tbody>
 138 </table>
 139 </div>
 140 <& /breeders_toolbox/add_accessions_dialogs.mas, preferred_species=>$preferred_species, editable_stock_props=>$editable_stock_props, editable_stock_props_definitions=>$editable_stock_props_definitions &>
 141
 142 <div class="well well-sm">
 143 <h1>Populations</h1><br/>
 144 <table class="table table-bordered">
 145 <thead>
 146 <tr><th>Add</th><th>Manage</th><th>Search</th></tr>
 147 </thead>
 148 <tbody>
 149 <tr>
 150 <td>
 151 <a id="manage_accessions_populations_new"><p>Add New Population</p></a>
 152 </td>
 153 <td>
 154 <a href="/breeders/accessions"><p>Go To Manage Accessions Page</p></a>
 155 </td>
 156 <td>
 157 <a href="/search/stocks"><p>Go To Stock Search</p></a>
 158 </td>
 159 </tr>
 160 </tbody>
 161 </table>
 162 </div>
 163 <& /breeders_toolbox/manage_populations_dialogs.mas &>
 164
 165
 166 <div class="well well-sm">
 167 <h1>Seedlots</h1><br/>
 168 <table class="table table-bordered">
 169 <thead>
 170 <tr><th>Add</th><th>Manage</th><th>Search</th></tr>
 171 </thead>
 172 <tbody>
 173 <tr>
 174 <td>
 175 <a name="seedlot_bulk_upload"><p>Upload Many Seedlots</p></a>
 176 <a name="add_seedlot_button"><p>Add A Seedlot</p></a>
 177 </td>
 178 <td>
 179 <a href="/breeders/seedlots"><p>Go To Manage Seedlots Page</p></a>
 180 </td>
 181 <td>
 182 <a href="/breeders/seedlots"><p>Go To Manage Seedlots Page</p></a>
 183 </td>
 184 </tr>
 185 </tbody>
 186 </table>
 187 </div>
 188 <& /breeders_toolbox/upload_seedlots_dialogs.mas &>
 189 <& /breeders_toolbox/add_seedlot_dialogs.mas, timestamp=>$timestamp &>
 190
 191 <div class="well well-sm">
 192 <h1>Pedigrees</h1><br/>
 193 <table class="table table-bordered">
 194 <thead>
 195 <tr><th>Add</th><th>Manage</th><th>Search</th></tr>
 196 </thead>
 197 <tbody>
 198 <tr>
 199 <td>
 200 <a id="upload_pedigrees_link"><p>Upload Many Pedigrees</p></a>
 201 </td>
 202 <td>
 203 <a href="/breeders/accessions"><p>Go To Manage Accessions Page</p></a>
 204 </td>
 205 <td>
 206 <a href="/search/cross"><p>Go To Search Crosses</p></a>
 207 </td>
 208 </tr>
 209 </tbody>
 210 </table>
 211 </div>
 212 <& /breeders_toolbox/upload_pedigrees_dialogs.mas &>
 213
 214 <div class="well well-sm">
 215 <h1>Crosses</h1><br/>
 216 <table class="table table-bordered">
 217 <thead>
 218 <tr><th>Plan</th><th>Add</th><th>Manage</th><th>Search</th></tr>
 219 </thead>
 220 <tbody>
 221 <tr>
 222 <td>
 223 <a id="create_cross_wishlist" >Create Cross Wishlist</a>
 224 </td>
 225 <td>
 226 <a name="upload_crosses_link"><p>Upload Many New Crosses</p></a>
 227 <a name="create_cross_link"><p>Add A Cross</p></a>
 228 <a name="upload_cross_info"><p>Upload Cross Info of Existing Crosses</p></a>
 229 <a name="upload_progenies_new_accessions_link"><p>Upload progeny names that are NOT in database</p></a>
 230 <a name="upload_progenies_existing_accessions_link"><p>Upload progeny names that already EXIST in database</p></a>
 231 <a name="upload_family_names_link"><p>Upload Family Names</p></a>
 232 </td>
 233 <td>
 234 <a href="/breeders/crosses"><p>Go To Manage Crosses Page</p></a>
 235 </td>
 236 <td>
 237 <a href="/search/cross"><p>Go To Search Crosses</p></a>
 238 </td>
 239 </tr>
 240 </tbody>
 241 </table>
 242 </div>
 243 <& /breeders_toolbox/cross/cross_wishlist.mas &>
 244 <& /breeders_toolbox/cross/add_cross_dialogs.mas, programs=>$breeding_programs, locations=>$geojson_locations &>
 245 <& /breeders_toolbox/cross/upload_crosses_dialogs.mas, programs=>$breeding_programs, locations=>$geojson_locations &>
 246 <& /breeders_toolbox/cross/upload_update_crosses.mas &>
 247 <& /breeders_toolbox/cross/add_progenies_dialogs.mas &>
 248
 249 <div class="well well-sm">
 250 <h1>Phenotypes</h1><br/>
 251 <table class="table table-bordered">
 252 <thead>
 253 <tr><th>Collection</th><th>Add</th><th>Manage</th><th>Search</th></tr>
 254 </thead>
 255 <tbody>
 256 <tr>
 257 <td>
 258 <a name="create_fieldbook_link"><p>Create Fieldbook Layout File</p></a>
 259 <a id="create_new_trait_file_link"><p>Create Fieldbook Trait File</p></a>
 260 <a name="create_spreadsheet_link"><p>Create Phenotyping Spreadsheet</p></a>
 261 </td>
 262 <td>
 263 <a id="upload_fieldbook_phenotypes_link"><p>Upload Fieldbook Database File</p></a>
 264 <a id="upload_spreadsheet_phenotypes_link"><p>Upload Phenotyping Spreadsheet</p></a>
 265 </td>
 266 <td>
 267 <a href="/breeders/phenotyping"><p>Go To Manage Phenotypes Page</p></a>
 268 </td>
 269 <td>
 270 <a href="/breeders/search"><p>Go To Search Wizard</p></a>
 271 </td>
 272 </tr>
 273 </tbody>
 274 </table>
 275 </div>
 276 <& /fieldbook/create_fieldbook_dialog.mas &>
 277 <& /fieldbook/create_trait_file_dialog.mas &>
 278 <& /fieldbook/upload_phenotype_fieldbook.mas &>
 279 <& /breeders_toolbox/upload_phenotype_spreadsheet.mas &>
 280 <& /breeders_toolbox/trial/create_spreadsheet_dialog.mas &>
 281
 282 </div>