forms/CytoScape/cy1.jnlp

   1 <?xml version="1.0" encoding="UTF-8"?>\r
   2 <jnlp codebase="localhost:3000/tools/interactomics/" href="cy1.jnlp">\r
   3   <security>\r
   4     <all-permissions />\r
   5   </security>\r
   6   <information>\r
   7     <title>Cytoscape Webstart</title>\r
   8     <vendor>Cytoscape Collaboration</vendor>\r
   9     <homepage href="http://cytoscape.org" />\r
  10     <offline-allowed />\r
  11   </information>\r
  12   <resources>\r
  13     <j2se version="1.5+" max-heap-size="1024M" />\r
  14     <!--All lib jars that cytoscape requires to run should be in this list-->\r
  15     <jar href="cytoscape.jar" />\r
  16     <jar href="lib/cytoscape-geom-spacial.jar" />\r
  17     <jar href="lib/freehep-util-2.0.2.jar" />\r
  18     <jar href="lib/biojava-1.4.jar" />\r
  19     <jar href="lib/resolver.jar" />\r
  20     <jar href="lib/cytoscape-graph-dynamic.jar" />\r
  21     <jar href="lib/colt.jar" />\r
  22     <jar href="lib/activation.jar" />\r
  23     <jar href="lib/freehep-export-2.1.1.jar" />\r
  24     <jar href="lib/phoebe.dnd.jar" />\r
  25     <jar href="lib/tclib.jar" />\r
  26     <jar href="lib/i4jruntime.jar" />\r
  27     <jar href="lib/FastInfoset.jar" />\r
  28     <jar href="lib/jaxws-api.jar" />\r
  29     <jar href="lib/jaxb-impl.jar" />\r
  30     <jar href="lib/cytoscape-util-intr.jar" />\r
  31     <jar href="lib/freehep-graphicsio-svg-2.1.1.jar" />\r
  32     <jar href="lib/saaj-api.jar" />\r
  33     <jar href="lib/jaxws-tools.jar" />\r
  34     <jar href="lib/cytoscape-render-export.jar" />\r
  35     <jar href="lib/mimepull.jar" />\r
  36     <jar href="lib/freehep-graphicsio-2.1.1.jar" />\r
  37     <jar href="lib/piccolo.jar" />\r
  38     <jar href="lib/itext-2.0.4.jar" />\r
  39     <jar href="lib/glf.jar" />\r
  40     <jar href="lib/jdom-1.0.jar" />\r
  41     <jar href="lib/freehep-io-2.0.2.jar" />\r
  42     <jar href="lib/jaxws-rt.jar" />\r
  43     <jar href="lib/freehep-jas-plotter-2.2.jar" />\r
  44     <jar href="lib/freehep-swing-2.0.3.jar" />\r
  45     <jar href="lib/jhall.jar" />\r
  46     <jar href="lib/jaxb-api.jar" />\r
  47     <jar href="lib/junit.jar" />\r
  48     <jar href="lib/com-nerius-math-xform.jar" />\r
  49     <jar href="lib/woodstox.jar" />\r
  50     <jar href="lib/giny.jar" />\r
  51     <jar href="lib/undo.support.jar" />\r
  52     <jar href="lib/commons-cli-1.x-cytoscape-custom.jar" />\r
  53     <jar href="lib/freehep-graphicsio-ps-2.1.1.jar" />\r
  54     <jar href="lib/sjsxp.jar" />\r
  55     <jar href="lib/http.jar" />\r
  56     <jar href="lib/cytoscape-cruft-obo.jar" />\r
  57     <jar href="lib/cytoscape-render-stateful.jar" />\r
  58     <jar href="lib/cytoscape-render-immed.jar" />\r
  59     <jar href="lib/stax-ex.jar" />\r
  60     <jar href="lib/ding.jar" />\r
  61     <jar href="lib/cytoscape-geom-rtree.jar" />\r
  62     <jar href="lib/swing-layout-1.0.3.jar" />\r
  63     <jar href="lib/jsr250-api.jar" />\r
  64     <jar href="lib/jsr173_api.jar" />\r
  65     <jar href="lib/cytoscape-graph-fixed.jar" />\r
  66     <jar href="lib/saaj-impl.jar" />\r
  67     <jar href="lib/cytoscape-task.jar" />\r
  68     <jar href="lib/fing.jar" />\r
  69     <jar href="lib/coltginy.jar" />\r
  70     <jar href="lib/freehep-xml-2.1.1.jar" />\r
  71     <jar href="lib/l2fprod-common-all.jar" />\r
  72     <jar href="lib/freehep-graphics2d-2.1.1.jar" />\r
  73     <jar href="lib/freehep-graphicsio-java-2.1.1.jar" />\r
  74     <jar href="lib/jnlp.jar" />\r
  75     <jar href="lib/violinstrings-1.0.2.jar" />\r
  76     <jar href="lib/swingx-beaninfo-1.0.jar" />\r
  77     <jar href="lib/concurrent.jar" />\r
  78     <jar href="lib/swingx-1.0.jar" />\r
  79     <jar href="lib/streambuffer.jar" />\r
  80     <jar href="lib/looks-2.1.4.jar" />\r
  81     <jar href="lib/jsr181-api.jar" />\r
  82     <!--These are the plugins you wish to load, edit as necessary.-->\r
  83     <jar href="plugins/biopax.jar" />\r
  84     <jar href="plugins/cPath.jar" />\r
  85     <jar href="plugins/yLayouts.jar" />\r
  86     <jar href="plugins/browser.jar" />\r
  87     <jar href="plugins/CytoscapeEditor.jar" />\r
  88     <jar href="plugins/psi_mi.jar" />\r
  89     <jar href="plugins/ncbiClient.jar" />\r
  90     <jar href="plugins/biomartClient.jar" />\r
  91     <jar href="plugins/filter.jar" />\r
  92     <jar href="plugins/filters.jar" />\r
  93     <jar href="plugins/AdvancedNetworkMerge.jar" />\r
  94     <jar href="plugins/ManualLayout.jar" />\r
  95     <jar href="plugins/linkout.jar" />\r
  96     <jar href="plugins/cpath2.jar" />\r
  97     <jar href="plugins/SBMLReader.jar" />\r
  98     <jar href="plugins/quick_find.jar" />\r
  99     <jar href="plugins/TableImport.jar" />\r
 100     <jar href="plugins/AutomaticLayout.jar" />\r
 101   </resources>\r
 102   <!--This starts-up Cytoscape, specify your plugins to load, and other command line arguments.  Plugins not specified here will not be loaded.-->\r
 103   <application-desc main-class="cytoscape.CyMain">\r
 104     <argument>-p</argument>\r
 105     <argument>cytoscape.coreplugins.biopax.BiopaxPlugin</argument>\r
 106     <argument>-p</argument>\r
 107     <argument>org.cytoscape.coreplugin.cpath.plugin.CPathPlugIn</argument>\r
 108     <argument>-p</argument>\r
 109     <argument>yfiles.YFilesLayoutPlugin</argument>\r
 110     <argument>-p</argument>\r
 111     <argument>browser.AttributeBrowserPlugin</argument>\r
 112     <argument>-p</argument>\r
 113     <argument>cytoscape.editor.CytoscapeEditorPlugin</argument>\r
 114     <argument>-p</argument>\r
 115     <argument>org.cytoscape.coreplugin.psi_mi.plugin.PsiMiPlugIn</argument>\r
 116     <argument>-p</argument>\r
 117     <argument>edu.ucsd.bioeng.idekerlab.ncbiclient.NCBIClientPlugin</argument>\r
 118     <argument>-p</argument>\r
 119     <argument>edu.ucsd.bioeng.idekerlab.biomartclient.BiomartClientPlugin</argument>\r
 120     <argument>-p</argument>\r
 121     <argument>filter.cytoscape.CsFilter</argument>\r
 122     <argument>-p</argument>\r
 123     <argument>cytoscape.filters.FilterPlugin</argument>\r
 124     <argument>-p</argument>\r
 125     <argument>csplugins.network.merge.NetworkMergePlugin</argument>\r
 126     <argument>-p</argument>\r
 127     <argument>ManualLayout.ManualLayoutPlugin</argument>\r
 128     <argument>-p</argument>\r
 129     <argument>linkout.LinkOutPlugin</argument>\r
 130     <argument>-p</argument>\r
 131     <argument>org.cytoscape.coreplugin.cpath2.plugin.CPathPlugIn2</argument>\r
 132     <argument>-p</argument>\r
 133     <argument>sbmlreader.SBMLReaderPlugin</argument>\r
 134     <argument>-p</argument>\r
 135     <argument>csplugins.quickfind.plugin.QuickFindPlugIn</argument>\r
 136     <argument>-p</argument>\r
 137     <argument>edu.ucsd.bioeng.coreplugin.tableImport.TableImportPlugin</argument>\r
 138     <argument>-p</argument>\r
 139     <argument>csplugins.layout.LayoutPlugin</argument>\r
 140   </application-desc>\r
 141 </jnlp>\r
 142 \r