cgi-bin/community/links/genefinding.pl

   1 use strict;
   2 use CXGN::Page;
   3 my $page=CXGN::Page->new('genefinding.html','html2pl converter');
   4 $page->header('Gene Finding Links');
   5 print<<END_HEREDOC;
   6
   7   <center>
   8
   9
  10     <table summary="" width="720" cellpadding="0" cellspacing="0"
  11     border="0">
  12       <tr>
  13         <td>
  14           <h4>Genefinding tools</h4>
  15
  16           <ul>
  17             <li><a href=
  18             "http://www.ncbi.nlm.nih.gov/gorf/gorf.html">NCBI ORF Finder</a></li>
  19
  20             <li><a href=
  21             "http://watson.nih.go.jp/~jun/cgi-bin/frameplot.pl">Frameplot</a></li>
  22
  23             <li><a href=
  24             "http://rulai.cshl.org/tools/genefinder/">Genefinder</a></li>
  25
  26             <li><a href=
  27             "http://www.cs.jhu.edu/~salzberg/announce-oc1.html">Oblique Classifier 1 (OC1)</a></li>
  28
  29             <li><a href=
  30             "http://www.bioinformatics.org/JaMBW/3/1/5/index.html">ORFseeker</a></li>
  31
  32             <li><a href=
  33             "http://www-hto.usc.edu/software/procrustes/wwwserv.html">
  34             PROCRUSTES</a></li>
  35
  36             <li><a href=
  37             "http://www.itb.cnr.it/sun/webgene/">WebGene</a></li>
  38           </ul>
  39
  40           <h4>Primer Design</h4>
  41
  42           <ul>
  43             <li><a href="http://frodo.wi.mit.edu/">
  44             Primer3</a></li>
  45
  46             <li><a href="http://bibiserv.techfak.uni-bielefeld.de/genefisher/">GeneFisher</a></li>
  47
  48             <li><a href="http://www.cybergene.se/primerdesign/">GeneWalker</a></li>
  49
  50             <li><a href="http://seq.yeastgenome.org/cgi-bin/web-primer">Web Primer</a></li>
  51
  52
  53
  54
  55             <li><a href="http://blocks.fhcrc.org/blocks/codehop.html">CODEHOP</a></li>
  56
  57             <li><a href="http://www.premierbiosoft.com/netprimer/netprlaunch/netprlaunch.html">NetPrimer</a></li>
  58
  59             <li><a href="http://ihg.gsf.de/ihg/ExonPrimer.html">ExonPrimer</a></li>
  60
  61             <li><a href="http://bioinformatics.org/primerx/">PrimerX</a></li>
  62
  63             <li><a href="http://www.cbs.dtu.dk/services/RevTrans/">RevTrans</a></li>
  64
  65             <li><a href="http://www.autoprime.de/">AutoPrime</a></li>
  66
  67             <li><a href="http://www.snpbox.org/">SNPbox</a></li>
  68
  69             <li><a href="http://www.umsl.edu/services/kellogg/primaclade.html">Primaclade</a></li>
  70
  71             <li><a href="http://cancer-seqbase.uchicago.edu/primers.html">Choosing Primers for sequencing</a></li>
  72
  73             <li><a href="http://seqcore.brcf.med.umich.edu/doc/dnaseq/primers.html">Design of Primers for Automated
  74             Sequencing</a></li>
  75
  76             <li><a href="http://www.primerdesign.co.uk/"> Primer Design Workshop</a></li>
  77           </ul>
  78
  79           <h4>Promoter Predictions</h4>
  80
  81
  82           <ul>
  83             <li><a href=
  84             "http://thr.cit.nih.gov/molbio/proscan/">Proscan</a></li>
  85           </ul>
  86         </td>
  87       </tr>
  88     </table>
  89
  90   </center>
  91 END_HEREDOC
  92 $page->footer();