db/00115/AddSequencedAccessionCvTerm.pm

   1 #!/usr/bin/env perl
   2
   3
   4 =head1 NAME
   5
   6  AddSequencedAccessionCvTerm
   7
   8 =head1 SYNOPSIS
   9
  10 mx-run AddSequencedAccessionCvTerm [options] -H hostname -D dbname -u username [-F]
  11
  12 this is a subclass of L<CXGN::Metadata::Dbpatch>
  13 see the perldoc of parent class for more details.
  14
  15 =head1 DESCRIPTION
  16
  17 This is a test dummy patch.
  18 This subclass uses L<Moose>. The parent class uses L<MooseX::Runnable>
  19
  20 =head1 AUTHOR
  21
  22  Naama Menda<nm249@cornell.edu>
  23
  24 =head1 COPYRIGHT & LICENSE
  25
  26 Copyright 2010 Boyce Thompson Institute for Plant Research
  27
  28 This program is free software; you can redistribute it and/or modify
  29 it under the same terms as Perl itself.
  30
  31 =cut
  32
  33
  34 package AddSequencedAccessionCvTerm;
  35
  36 use Moose;
  37 use Bio::Chado::Schema;
  38 use Try::Tiny;
  39
  40
  41 extends 'CXGN::Metadata::Dbpatch';
  42
  43
  44 has '+description' => ( default => <<'' );
  45 Description of this patch goes here
  46
  47 has '+prereq' => (
  48     default => sub {
  49         [],
  50     },
  51   );
  52
  53 sub patch {
  54     my $self=shift;
  55
  56     my $schema = Bio::Chado::Schema->connect( sub { $self->dbh->clone } );
  57
  58     print STDOUT "Executing the patch:\n " .   $self->name . ".\n\nDescription:\n  ".  $self->description . ".\n\nExecuted by:\n " .  $self->username . " .";
  59
  60     print STDOUT "\nChecking if this db_patch was executed before or if previous db_patches have been executed.\n";
  61
  62     print STDOUT "\nExecuting the SQL commands.\n";
  63
  64
  65     $schema->resultset("Cv::Cvterm")->create_with({
  66         name => 'sequencing_project_info',
  67         cv => 'stock_property'
  68                                                   });
  69     print "You're done!\n";
  70 }
  71
  72
  73 ####
  74 1; #
  75 ####