t/data/blastreport

   1 BLASTN 2.2.18 [Mar-02-2008]
   2
   3
   4 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
   5 Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
   6 "Gapped BLAST and PSI-BLAST: a new generation of protein database search
   7 programs",  Nucleic Acids Res. 25:3389-3402.
   8
   9 Query= WEB-USER-SEQUENCE (Unknown)
  10          (483 letters)
  11
  12 Database: Tomato BAC end seqs - MboI
  13            88,728 sequences; 44,789,136 total letters
  14
  15 Searching..................................................done
  16
  17
  18
  19                                                                  Score    E
  20 Sequences producing significant alignments:                      (bits) Value
  21
  22 SL_MboI0050O02_SP6_153886 Unknown                                     910   0.0
  23 SL_MboI0019D11_T7_215962 Unknown                                      611   e-174
  24
  25
  26  Score =  910 bits (459), Expect = 0.0
  27  Identities = 0/483 (0%)
  28  Strand = Plus / Plus
  29
  30
  31 Query: 1   tttaaaataataatataattccaacttgtatcttcttttatgttaatcgattttaaagtt 60
  32
  33
  34 Query: 61  ttacaattattgctgacattaaattattaaatcatgagttgtgtagtgaaatggaattgg 120
  35
  36
  37 Query: 121 ctagccactttaaacgttatccaagttatacaaattttacttttagcctcttttatgaga 180
  38
  39
  40 Query: 181 tattgagcagtaaagtacatnnnnnnnntagcacaagataatcacttttaagttttttcc 240
  41
  42
  43 Query: 241 agtggtacaatttactgtgaaatagaacgagctgaccacttcaagttcttgaattgatat 300
  44
  45
  46 Query: 301 aatttacgactttagcttatttttatgaaatcttaaccatgtagtaatacagttttggat 360
  47
  48
  49 Query: 361 acgcattttaaaactctttcaagtaataccttttacgatttaacctatttatatgaaatc 420
  50
  51
  52 Query: 421 ctaatcaattaactaggtagtaaaataaatacgatttgactaatcgctcttttagcttgt 480
  53
  54
  55 Query: 481 taa 483
  56
  57
  58
  59  Score =  611 bits (308), Expect = e-174
  60  Identities = 0/484 (0%), Gaps = 1/484 (0%)
  61  Strand = Plus / Plus
  62
  63
  64 Query: 1   tttaaaataataatataattccaacttgtatcttcttttatgttaatcg-attttaaagt 59
  65
  66
  67 Query: 60  tttacaattattgctgacattaaattattaaatcatgagttgtgtagtgaaatggaattg 119
  68
  69
  70 Query: 120 gctagccactttaaacgttatccaagttatacaaattttacttttagcctcttttatgag 179
  71
  72
  73 Query: 180 atattgagcagtaaagtacatnnnnnnnntagcacaagataatcacttttaagttttttc 239
  74
  75
  76 Query: 240 cagtggtacaatttactgtgaaatagaacgagctgaccacttcaagttcttgaattgata 299
  77
  78
  79 Query: 300 taatttacgactttagcttatttttatgaaatcttaaccatgtagtaatacagttttgga 359
  80
  81
  82 Query: 360 tacgcattttaaaactctttcaagtaataccttttacgatttaacctatttatatgaaat 419
  83
  84
  85 Query: 420 cctaatcaattaactaggtagtaaaataaatacgatttgactaatcgctcttttagcttg 479
  86
  87
  88 Query: 480 ttaa 483
  89
  90
  91   Database: Tomato BAC end seqs - MboI
  92     Posted date:  Jun 15, 2011 12:57 AM
  93   Number of letters in database: 44,789,136
  94   Number of sequences in database:  88,728
  95
  96 Lambda     K      H
  97     1.37    0.711     1.31
  98
  99 Gapped
 100 Lambda     K      H
 101     1.37    0.711     1.31
 102
 103
 104 Matrix: blastn matrix:1 -3
 105 Gap Penalties: Existence: 5, Extension: 2
 106 Number of Sequences: 88728
 107 Number of Hits to DB: 371,404
 108 Number of extensions: 25210
 109 Number of successful extensions: 25109
 110 Number of sequences better than 1.0e-10: 2
 111 Number of HSP's gapped: 25108
 112 Number of HSP's successfully gapped: 5
 113 Length of query: 483
 114 Length of database: 44,789,136
 115 Length adjustment: 17
 116 Effective length of query: 466
 117 Effective length of database: 43,280,760
 118 Effective search space: 20168834160
 119 Effective search space used: 20168834160
 120 X1: 11 (21.8 bits)
 121 X2: 15 (29.7 bits)
 122 X3: 50 (99.1 bits)
 123 S1: 11 (22.3 bits)
 124 S2: 34 (67.9 bits)