db/00149/AddSeedlotMaintenanceType.pm

   1 #!/usr/bin/env perl
   2
   3
   4 =head1 NAME
   5
   6  AddSeedlotMaintenanceType.pm
   7
   8 =head1 SYNOPSIS
   9
  10 mx-run AddSeedlotMaintenanceType [options] -H hostname -D dbname -u username [-F]
  11
  12 =head1 DESCRIPTION
  13
  14 This patch adds the cvterm 'seedlot_maintenance_json' to the 'stock_property' cv
  15
  16 =head1 AUTHOR
  17
  18 David Waring <djw64@cornell.edu>
  19
  20 =head1 COPYRIGHT & LICENSE
  21
  22 Copyright 2010 Boyce Thompson Institute for Plant Research
  23
  24 This program is free software; you can redistribute it and/or modify
  25 it under the same terms as Perl itself.
  26
  27 =cut
  28
  29
  30 package AddSeedlotMaintenanceType;
  31
  32 use Moose;
  33 use Bio::Chado::Schema;
  34 use Try::Tiny;
  35 extends 'CXGN::Metadata::Dbpatch';
  36
  37 has '+description' => ( default => <<'' );
  38 This patch adds the cvterm 'seedlot_maintenance_json' to the 'stock_property' cv
  39
  40 has '+prereq' => (
  41     default => sub {
  42         [],
  43     },
  44   );
  45
  46 sub patch {
  47     my $self=shift;
  48
  49     print STDOUT "Executing the patch:\n " .   $self->name . ".\n\nDescription:\n  ".  $self->description . ".\n\nExecuted by:\n " .  $self->username . " .";
  50
  51     print STDOUT "\nChecking if this db_patch was executed before or if previous db_patches have been executed.\n";
  52
  53     print STDOUT "\nExecuting the SQL commands.\n";
  54
  55     my $schema = Bio::Chado::Schema->connect( sub { $self->dbh->clone } );
  56     my $term = 'seedlot_maintenance_json';
  57     $schema->resultset("Cv::Cvterm")->create_with({
  58       name => $term,
  59       cv => 'stock_property'
  60     });
  61
  62     print "You're done!\n";
  63 }
  64
  65
  66 ####
  67 1; #
  68 ####