.github/workflows/test.yml

   1 on:
   2   pull_request:
   3     paths-ignore:
   4       - 'docs/**'
   5       - '**.md'
   6
   7 jobs:
   8   test_breedbase:
   9     runs-on: ubuntu-latest
  10     container:
  11       image: breedbase/breedbase:v0.33
  12       env:
  13         HOME: /root
  14         MODE: 'TESTING'
  15         PGPASSWORD: postgres
  16         SGN_TEST_SERVER: http://test_breedbase:3010
  17         SGN_REMOTE_SERVER_ADDR: selenium
  18       volumes:
  19         - ${{ github.workspace }}:/home/production/cxgn/sgn
  20         - ${{ github.workspace }}:/home/vagrant/cxgn/sgn
  21       options: --network-alias test_breedbase
  22
  23     services:
  24       breedbase_db:
  25         image: postgres:12.8
  26         env:
  27           POSTGRES_PASSWORD: postgres
  28         # Set health checks to wait until postgres has started
  29         options: >-
  30           --health-cmd pg_isready
  31           --health-interval 10s
  32           --health-timeout 5s
  33           --health-retries 5
  34
  35       selenium:
  36         image: selenium/standalone-firefox:3.141.59
  37         options: --health-cmd="curl --silent --head http://localhost:4444 || exit 1"
  38
  39     steps:
  40       - name: Checkout sgn
  41         uses: actions/checkout@v2
  42
  43       - name: Run unit tests
  44         run: prove --recurse t/unit
  45
  46       - name: Load/dump fixture database and build node modules
  47         run: |
  48           echo "--version" > ~/.proverc
  49           perl t/test_fixture.pl --dumpupdatedfixture
  50           rm ~/.proverc
  51         # work around run_all_patches.pl "what the heck - no TTY??" error
  52         # https://github.com/actions/runner/issues/241#issuecomment-842566950
  53         shell: 'script --flush --quiet --return --command "bash --noprofile --norc -eo pipefail {0}"'
  54
  55       - name: Run unit_fixture tests
  56         # need entrypoint.sh to start slurm
  57         # --nopatch to skip running fixture and db patches (already done in previous step)
  58         run: /entrypoint.sh --nopatch t/unit_fixture
  59
  60       - name: Run unit_mech tests
  61         run: /entrypoint.sh --nopatch t/unit_mech
  62
  63       - name: Run selenium tests
  64         run: /entrypoint.sh --nopatch t/selenium2