cgi-bin/methods/unigene/unigene-builds.pl

   1 use strict;
   2 use CXGN::Page;
   3 my $page=CXGN::Page->new('unigene-builds.html','html2pl converter');
   4 $page->header('SGN Unigene Builds');
   5 print<<END_HEREDOC;
   6
   7   <center>
   8
   9     <table summary="" width="720" cellpadding="0" cellspacing="0"
  10     border="0">
  11       <tr>
  12         <td>
  13
  14
  15           <h3>SGN Unigene Builds</h3>
  16
  17           <p>The Sol Genomics Network unigene builds represent
  18           "minimally redundant" collections of expressed genes in
  19           Solanaceous species, constructed from EST/cDNA sequence
  20           data present in SGN's databases. The unigene set is
  21           "built" from EST data by assembling together, in contigs,
  22           EST sequences which are ostensibly fragments of the same
  23           gene, modulo sequencing errors and allelic variation. In
  24           builds containing ESTs from more than one species, larger
  25           variation is allowed to account for anticipated
  26           evolutionary divergence of orthologus genes.</p>
  27
  28           <p>SGN's unigene assembly strategy, as well as sequence
  29           recovery and trimming, is under active research and
  30           continually refined. New builds are posted when advances
  31           in the assembly process are made or new input data is
  32           available.</p>
  33
  34           <p>The latest builds are posted below. For more
  35           information on <a href=
  36           "unigene-methods.pl">methods</a>, click the links below
  37           next the the build of interest. Please also see our notes
  38           on <a href="unigene-validation.pl">validation</a> of
  39           SGN's assembly process and comparison with <a href=
  40           "http://www.tigr.org/tdb/tgi/">TIGR's tomato gene
  41           index</a>.</p>
  42         </td>
  43       </tr>
  44
  45     </table>
  46   </center>
  47 END_HEREDOC
  48 $page->footer();